Rh2AG139300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018021
Physical Location & Seq
Forward (+)
12652066 .. 12665550
13485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG139300.1

Sequence Viewer

Length: 390 bp
ATGGCGAAATGTATAAAGGATGCAGAACCTCGGGTCCTCGGTGGGCTAAGAACTCCAACAATTGCAATGGAAGAGGTATTCATGGAGATTATAGTGCCCTTGACTTTGACAAACAGAAAGGTAGATATACATTTGCATGAGATAAAATACAGACCCGGCAAGGTTAACTCATTTGCATGCTTCTCATCATCAAATTGGGTTTCACAGGAGAACGGCCGAAAAGAATTAAAAGGGATAAAAAATTCAGCTCTTGCAGGGTTGAGTGCTCCACAGTCCACACCTGCTCCACATCGCAGACTTTTGAACCAAAAAGAGAGTTTTACAAATAAAAAGGTTGACATCCAAAACGAGACGAGCAGGTTAAACTACACCCCTTTCAAGGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

9.78

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018021)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05630 FvH4_4g17470
rosa_chinensis RchiOBHm_Chr1g0378451
rosa_laevigata RLG00000028423
rosa_multiflora Rmu_sc0026514.1_g000001
rosa_roxburghii Rroxscaffold_1G00071590 Rroxscaffold_1G00071830 Rroxscaffold_2G00138070
rosa_rugosa Rorug02G0090500 Rorug04G0294700
rosa_samantha Rh2AG139300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 2 cut(s) 289, 348
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 379, 380
AgsI TTSAA 2 cut(s) 304, 379
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 229
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 344
BfuAI ACCTGC 2 cut(s) 289, 348
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 29, 37
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 380
Bse3DI GCAATG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 29, 37
BseGI GGATG 2 cut(s) 25, 339
BseLI CCNNNNNNNGG 2 cut(s) 379, 380
BseMI GCAATG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 99
BseX3I CGGCCG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 216
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 379, 380
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 99, 268
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 35
BspMI ACCTGC 2 cut(s) 289, 348
BsrDI GCAATG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 29, 37
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 25, 339
BstMAI GTCTC 1 cut(s) 344
BstMCI CGRYCG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 2 cut(s) 25, 339
BveI ACCTGC 2 cut(s) 289, 348
Cac8I GCNNGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 3 cut(s) 82, 137, 177
CviJI RGCY 3 cut(s) 46, 216, 248
CviKI_1 RGCY 3 cut(s) 46, 216, 248
DdeI CTNAG 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 214
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 3 cut(s) 85, 140, 180
FaiI YATR 6 cut(s) 14, 83, 92, 128, 138, 178
FatI CATG 3 cut(s) 81, 136, 176
FokI GGATG 2 cut(s) 32, 326
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 156
Hin1II CATG 3 cut(s) 85, 140, 180
HincII GTYRAC 2 cut(s) 166, 337
HindII GTYRAC 2 cut(s) 166, 337
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 1 cut(s) 156
Hpy166II GTNNAC 3 cut(s) 166, 276, 337
Hpy8I GTNNAC 3 cut(s) 166, 276, 337
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 23, 65, 136, 176, 254
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 3 cut(s) 85, 140, 180
KspAI GTTAAC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 271, 289
LpnPI CCDG 5 cut(s) 169, 191, 240, 294, 343
LweI GCATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 83
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 99, 268
MluCI AATT 4 cut(s) 60, 193, 224, 241
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 3 cut(s) 39, 47, 67
MseI TTAA 3 cut(s) 165, 227, 362
MslI CAYNNNNRTG 2 cut(s) 135, 175
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 60
NciI CCSGG 1 cut(s) 156
NlaIII CATG 3 cut(s) 85, 140, 180
NlaIV GGNNCC 1 cut(s) 35
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PaqCI CACCTGC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 135, 175
SaqAI TTAA 3 cut(s) 165, 227, 362
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 99, 268
SetI ASST 8 cut(s) 31, 78, 123, 165, 250, 283, 336, 362
SfaNI GCATC 1 cut(s) 10
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 135, 175
SphI GCATGC 1 cut(s) 180
Sse9I AATT 4 cut(s) 60, 193, 224, 241
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 273
TasI AATT 4 cut(s) 60, 193, 224, 241
Tru1I TTAA 3 cut(s) 165, 227, 362
Tru9I TTAA 3 cut(s) 165, 227, 362
TspDTI ATGAA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 241
XceI RCATGY 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.