Rorug02G0090500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018021
Physical Location & Seq
Forward (+)
7194041 .. 7195017
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0090500.1

Sequence Viewer

Length: 885 bp
ATGACATCTGAAATACCTTCTCAAAATAAACCCTCTGCAAAGAGCAAAAGTAGATCTACGAATTACTCAGTTCAAGAAGACATTCTTTTGGTATCTGCATGGCTCAACATTGGCTTAGATCCAGTGAAAGGAAATGATCAAAAAAGTACTGCATATTGGGCTAGAATTGCAGAATACTATCATAAAAACAAGACTTTTGAAACTAACCGGGATGCTAGTTCTCTACAACACCGTTGGTCTGCAATTCAAGCGGCTGTTAATAAGTTTTGTGGATACTATGAACAGATTCTGAATCGACCACAAAGTGGTGAGACTGAACAAGACAAGCTCCAACGAGCGAAAAAGATGTACAGAGAGAGAGAAAAAGTTGCATTTTTGCAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGATATCGTTCAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAAGCGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCATGGAGCGGCCAATAGGACAAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGTTAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAACGTAGGAAAGAAGAACGTTTCCAATTGAGTCTTTCTCAAGAAGAAAAGCTCTATATTCTCAAGGAAAAAAAGGAGCAAGCGAAACAACAACGAGAGGATGATAAAATAATGTTGATAGATATCACTACTCTGCCGGAAATGCAAGCTGCATATTTTAGAGACCGTCAGGCAGAAATCATGGCAAGAAGAGCCCGTCCAAGTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

34.29

Weight (kDa)

9.56

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 125 - 283 5.1e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018021)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05630 FvH4_4g17470
rosa_chinensis RchiOBHm_Chr1g0378451
rosa_laevigata RLG00000028423
rosa_multiflora Rmu_sc0026514.1_g000001
rosa_roxburghii Rroxscaffold_1G00071590 Rroxscaffold_1G00071830 Rroxscaffold_2G00138070
rosa_rugosa Rorug02G0090500 Rorug04G0294700
rosa_samantha Rh2AG139300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 565
AciI CCGC 2 cut(s) 251, 565
AclI AACGTT 1 cut(s) 688
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 504
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 148, 350
AfiI CCNNNNNNNGG 2 cut(s) 128, 305
AgsI TTSAA 6 cut(s) 74, 200, 248, 403, 497, 658
AluBI AGCT 5 cut(s) 328, 443, 587, 721, 818
AluI AGCT 5 cut(s) 328, 443, 587, 721, 818
Alw26I GTCTC 3 cut(s) 305, 495, 825
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 443, 818
Asp700I GAANNNNTTC 2 cut(s) 81, 285
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 430, 805
BciVI GTATCC 1 cut(s) 266
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 305, 495, 825
BfaI CTAG 3 cut(s) 162, 216, 459
BfuI GTATCC 1 cut(s) 266
BglII AGATCT 1 cut(s) 53
BisI GCNGC 4 cut(s) 252, 444, 566, 819
BlsI GCNGC 4 cut(s) 253, 445, 567, 820
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 691, 723
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 2 cut(s) 693, 716
BpuMI CCSGG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 825
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 305
Bse1I ACTGG 2 cut(s) 122, 395
Bse3DI GCAATG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 791
BseGI GGATG 2 cut(s) 217, 775
BseJI GATNNNNATC 1 cut(s) 791
BseLI CCNNNNNNNGG 2 cut(s) 128, 305
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 122, 395
BseXI GCAGC 2 cut(s) 430, 805
BshFI GGCC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 208, 806
BslI CCNNNNNNNGG 2 cut(s) 128, 305
BsmAI GTCTC 3 cut(s) 305, 495, 825
BsmBI CGTCTC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 1 cut(s) 568
Bso31I GGTCTC 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 865
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 53, 118, 136
BspACI CCGC 2 cut(s) 251, 565
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 853
BspTNI GGTCTC 1 cut(s) 825
BsrBI CCGCTC 1 cut(s) 565
BsrDI GCAATG 1 cut(s) 538
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 2 cut(s) 122, 395
BssMI GATC 3 cut(s) 53, 118, 136
Bst4CI ACNGT 2 cut(s) 233, 836
Bst6I CTCTTC 2 cut(s) 498, 853
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 750, 816
BstDEI CTNAG 3 cut(s) 67, 115, 588
BstF5I GGATG 2 cut(s) 217, 775
BstKTI GATC 3 cut(s) 56, 121, 139
BstMAI GTCTC 3 cut(s) 305, 495, 825
BstMBI GATC 3 cut(s) 53, 118, 136
BstMWI GCNNNNNNNGC 7 cut(s) 158, 167, 248, 440, 449, 811, 860
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 430, 805
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 53, 118
BstYI RGATCY 2 cut(s) 53, 118
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 217, 775
BtsIMutI CAGTG 2 cut(s) 129, 436
Cac8I GCNNGC 2 cut(s) 750, 816
CaiI CAGNNNCTG 1 cut(s) 289
CseI GACGC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 147, 349
CviAII CATG 3 cut(s) 99, 559, 850
CviQI GTAC 2 cut(s) 147, 349
DdeI CTNAG 3 cut(s) 67, 115, 588
DpnI GATC 3 cut(s) 55, 120, 138
DpnII GATC 3 cut(s) 53, 118, 136
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 566
Eam1104I CTCTTC 2 cut(s) 498, 853
EarI CTCTTC 2 cut(s) 498, 853
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 825
Eco32I GATATC 2 cut(s) 423, 793
Eco57I CTGAAG 1 cut(s) 504
EcoRV GATATC 2 cut(s) 423, 793
EcoT38I GRGCYC 1 cut(s) 865
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 3 cut(s) 102, 562, 853
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 477, 509
FatI CATG 3 cut(s) 98, 558, 849
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 252, 444, 566, 819
FokI GGATG 2 cut(s) 224, 782
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 4 cut(s) 252, 444, 566, 819
FspBI CTAG 3 cut(s) 162, 216, 459
GluI GCNGC 4 cut(s) 252, 444, 566, 819
HaeIII GGCC 1 cut(s) 568
HapII CCGG 2 cut(s) 208, 806
HgaI GACGC 1 cut(s) 477
Hin1II CATG 3 cut(s) 102, 562, 853
HinfI GANTC 3 cut(s) 286, 292, 700
HpaII CCGG 2 cut(s) 208, 806
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 10, 291, 547
Hpy188III TCNNGA 4 cut(s) 74, 400, 482, 710
HpyAV CCTTC 3 cut(s) 27, 521, 561
HpyCH4III ACNGT 2 cut(s) 233, 836
HpyCH4IV ACGT 2 cut(s) 673, 688
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 167, 248, 440, 449, 811, 860
HpyF3I CTNAG 3 cut(s) 67, 115, 588
HpySE526I ACGT 2 cut(s) 673, 688
Hsp92II CATG 3 cut(s) 102, 562, 853
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 3 cut(s) 53, 118, 136
LguI GCTCTTC 1 cut(s) 853
LmnI GCTCC 3 cut(s) 333, 562, 745
LpnPI CCDG 7 cut(s) 135, 221, 376, 495, 634, 819, 824
Lsp1109I GCAGC 2 cut(s) 430, 805
LweI GCATC 1 cut(s) 202
MaeI CTAG 3 cut(s) 162, 216, 459
MaeII ACGT 2 cut(s) 673, 688
MalI GATC 3 cut(s) 55, 120, 138
MbiI CCGCTC 1 cut(s) 565
MboI GATC 3 cut(s) 53, 118, 136
MboII GAAGA 5 cut(s) 89, 485, 695, 725, 870
MfeI CAATTG 3 cut(s) 447, 635, 695
MflI RGATCY 2 cut(s) 53, 118
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 7 cut(s) 61, 165, 243, 447, 635, 644, 695
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 2 cut(s) 43, 760
MroXI GAANNNNTTC 2 cut(s) 81, 285
MseI TTAA 3 cut(s) 258, 599, 615
MspI CCGG 2 cut(s) 208, 806
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 3 cut(s) 447, 635, 695
Mva1269I GAATGC 1 cut(s) 653
MwoI GCNNNNNNNGC 7 cut(s) 158, 167, 248, 440, 449, 811, 860
NciI CCSGG 1 cut(s) 209
NdeII GATC 3 cut(s) 53, 118, 136
NlaIII CATG 3 cut(s) 102, 562, 853
PciSI GCTCTTC 1 cut(s) 853
PctI GAATGC 1 cut(s) 653
PdmI GAANNNNTTC 2 cut(s) 81, 285
PfeI GAWTC 2 cut(s) 286, 292
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 4 cut(s) 253, 445, 567, 820
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Psp1406I AACGTT 1 cut(s) 688
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 53, 118
RsaI GTAC 2 cut(s) 148, 350
RsaNI GTAC 2 cut(s) 147, 349
SapI GCTCTTC 1 cut(s) 853
SaqAI TTAA 3 cut(s) 258, 599, 615
SatI GCNGC 4 cut(s) 252, 444, 566, 819
Sau3AI GATC 3 cut(s) 53, 118, 136
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 708, 731
SmoI CTYRAG 2 cut(s) 708, 731
Sse9I AATT 7 cut(s) 61, 165, 243, 447, 635, 644, 695
SsiI CCGC 2 cut(s) 251, 565
SspMI CTAG 3 cut(s) 162, 216, 459
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 233, 836
TaiI ACGT 2 cut(s) 676, 691
TaqI TCGA 1 cut(s) 295
TasI AATT 7 cut(s) 61, 165, 243, 447, 635, 644, 695
TatI WGTACW 2 cut(s) 146, 348
TauI GCSGC 2 cut(s) 254, 568
TfiI GAWTC 2 cut(s) 286, 292
Tru1I TTAA 3 cut(s) 258, 599, 615
Tru9I TTAA 3 cut(s) 258, 599, 615
TscAI CASTG 2 cut(s) 129, 436
TseI GCWGC 2 cut(s) 443, 818
TspDTI ATGAA 4 cut(s) 294, 495, 540, 547
TspRI CASTG 2 cut(s) 129, 436
Van91I CCANNNNNTGG 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 81, 285
XspI CTAG 3 cut(s) 162, 216, 459
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.