Rroxscaffold_2G00138070

Belongs to the peptidase M24B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018021
Physical Location & Seq
Forward (+)
76115196 .. 76117523
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138070.1

Sequence Viewer

Length: 282 bp
ATGCGGAGGGCGCGCCGAGATGGTCTTGAGGGATGTGTGCGGAGGCCGGAGGTGATGAGTGGTGGTCTGGACTCGGGCTCTCATTGGAGGTTGGCTCCGTTCATTGCTGAATGTTATATGAGGAGGTCCTATATGTCGGGTTTCACTGGGAGTGCCGGAACTGCTGTCGTCACAAAGGATAAAGCAGCTCTTTGGACAGATGGGCGCTATTATCTTCAGGTTTGTAAAGACAGCAAGTTAATTTTTCACTCTGGTTATCGTGATGGCTTACTGCTCCTTTGA

Protein Analysis

93

Amino Acids

10.47

Weight (kDa)

9.6

Isoelectric Point (pI)

70.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Creatinase_N PF01321 42 - 74 4.6e-06 Creatinase/Prolidase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018021)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05630 FvH4_4g17470
rosa_chinensis RchiOBHm_Chr1g0378451
rosa_laevigata RLG00000028423
rosa_multiflora Rmu_sc0026514.1_g000001
rosa_roxburghii Rroxscaffold_1G00071590 Rroxscaffold_1G00071830 Rroxscaffold_2G00138070
rosa_rugosa Rorug02G0090500 Rorug04G0294700
rosa_samantha Rh2AG139300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 4, 40
AcuI CTGAAG 1 cut(s) 200
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 185
AscI GGCGCGCC 1 cut(s) 11
AspLEI GCGC 3 cut(s) 13, 15, 207
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 73
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 197
BccI CCATC 3 cut(s) 14, 194, 257
BfoI RGCGCY 1 cut(s) 208
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpuEI CTTGAG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 102
BseGI GGATG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 151
BsePI GCGCGC 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 2 cut(s) 47, 156
BsnI GGCC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 80
BspACI CCGC 2 cut(s) 4, 40
BspANI GGCC 1 cut(s) 46
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 151
BssHII GCGCGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 3 cut(s) 13, 15, 207
BstMWI GCNNNNNNNGC 2 cut(s) 10, 161
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 3 cut(s) 13, 15, 207
Cfr13I GGNCC 1 cut(s) 126
CviJI RGCY 5 cut(s) 46, 78, 95, 188, 267
CviKI_1 RGCY 5 cut(s) 46, 78, 95, 188, 267
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 80
FaiI YATR 4 cut(s) 117, 119, 132, 134
FalI AAGNNNNNCTT 2 cut(s) 174, 206
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 3 cut(s) 12, 14, 206
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 47, 156
HhaI GCGC 3 cut(s) 13, 15, 207
Hin6I GCGC 3 cut(s) 11, 13, 205
HinP1I GCGC 3 cut(s) 11, 13, 205
HinfI GANTC 1 cut(s) 71
HpaII CCGG 2 cut(s) 47, 156
HphI GGTGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 26, 68, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 161
HspAI GCGC 3 cut(s) 11, 13, 205
LmnI GCTCC 2 cut(s) 100, 279
LpnPI CCDG 6 cut(s) 53, 60, 132, 169, 203, 237
Lsp1109I GCAGC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 169
MboII GAAGA 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 6 cut(s) 22, 36, 43, 81, 114, 117
MseI TTAA 1 cut(s) 239
MspI CCGG 2 cut(s) 47, 156
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 10, 161
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 169
PalAI GGCGCGCC 1 cut(s) 11
PauI GCGCGC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 126
PspPPI RGGWCCY 1 cut(s) 126
PteI GCGCGC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 80
SetI ASST 5 cut(s) 54, 92, 128, 190, 222
SgsI GGCGCGCC 1 cut(s) 11
SinI GGWCC 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 240
SsiI CCGC 2 cut(s) 4, 40
TasI AATT 1 cut(s) 240
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.