FvH4_4g18230

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012544
Physical Location & Seq
Reverse (-)
22182998 .. 22187647
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18230.t1

Sequence Viewer

Length: 2691 bp
ATGCTCCTAAGAAACCAAGGAATACGTCATTTAGATGGATTCTGTAGCATTTACAATTTTTCCAAGAGGTTTTCGTCCTTGCCAAATGGGACTTCTTCTGGAGTTGATGGGAAAGTTGGTTCCTCGGTTGGTGGGGTTAATCATGATAATTCTGGGAAAGTGGAGGGTGTGAGACAAGTAGTTGATGTTGTGTGCCAAGTCCTGGAGGGTGGTCCTTGGGGACCTGCCCTTGAGAATGCTCTGTCTGCACTTGACGAAAAACCTCAACCAGAATTAGTTATTGGAGTCTTAAGGAGGCTGAAAGATGTCGGTCAAGCAATTAATTATTTCCGCTGGTGTGAGAAACAAACAGATCAAGCACACTGTCCAGAAGTGTACAACTCACTTCTCCTGGTCATGGCCAGGAGTAGGAATTTTAAGAGCTTGGATCAAGTTCTGGAAGAAATGAGTATTGCCGGAATTGGTCCATCAAATAATGCATGTATAGAGTTAGTTTCAAGCTGTGTCAGGTCACAGAAACTGAGAGAAGCTTTTGATCTACTGCAAACCATGAGGAAGTTCAAATTCTGCCCGGCATTTTCAGCCTATACAACTCTGATTGGAGCTCTGTCGACAATTCCTGAATCTGATCTAATGCTGAAGCTCTTTCATCAAATGCAGGAGCTAGGCTATGAAGTTACTGTGCATTTATTTACAACTCTTATTCGTGTCTTTGCCAAGGAAGGCCGAGTTGACGCTGCCCTCTCCTTGTTGGATGAGATGAAGAGCAACTCTTGTAATGCAGACATTGTTCTTTATAATGTTTGCATAGACTGCTTTGGCAAGGTGGGTAAGGTGGATATGGCCTGGAAATTTTTTCATGAAATGAGAATGAATGGTTTGATGCCCGATGATGTGACATATACGAGCATGATAGGTGTGCTCTGCAAAGCTGAGAAACTAAATGAGGCTGTAGAGCTGTTTGAGGAGATGGATGCCAACAGGAAAGTACCTTGTGTGTATGCTTATAACACCATGATCATGGGCTATGGCTCTGTTGGAAAGTTTGATGAAGCATACAGCTTATTTGAGAGGCAAAAAAAGAAGGGGTGCATTCCGAGTGTAATTGCGTATAATTGTGTTCTCACTTGCCTAGGGAAGAAGGGGAGATCTGAAGAAGCGTTGAGGGTTTTTAATGAGATGAAGACAGATGCAGCACCCAATATTTCAACATATAACATTTTAGTAGACATGCTTTGCAGGGCAGGTAATGTTGAGGCCGCTCTGCAGGTTCAGGATGATATGAAAGAAGCTGGCTTATATCCTAATGTGATGACTGCAAACATAATGATTGACCGACTCTGTAAAGCACAGAAACTTGATGAAGCATGTTCTATATTTGAAGGAATGGATCATAAAGTTTTCATGCCAGATGCAGTGACATTTTGTTCTCTTATAGATGGCTTGGGAAGACGTGGAAGAGTGAATGATGCTTATAGACTTTATGAGAAGATGCTAGATTCTGATCAGATTCCAAATGCTATAGCTTACACATCCCTCATCAGGAACTTCTTCAAGTGTGGGAGGAAGGAGGATGGTCACAAAATATATAAAGAAATGGTGCGTAGGGGCTGCTCTCCCGACCTGATGCTCCTTAATACCTACATGGATTGTGTTTTCAAGGCTGGTGAAACAGAGAAAGGTAGATCTGTATTTGAGGAGATTAAGGCTAGAGGATTCATTCCTGATGTGAGGAGCTATTCAATCTTAATTCATGGCCTTGTCAAAGCGGGTTTTGCAAATGAAACCTATAAATTATTTCATGCGATGAAAGAACAAGGTTGTGAATTGGACACTCGAGCTTACAATGCCATCATTGATGGATTCTGCAAATGTGGAAAGGTGAATAAAGCATATCAGCTTCTGGAGGAAATGAAAAGTAAGGGTCAGCAACCCACTGTTGTAACTTATGGTTCTGTGATTGATGGGCTTGCCAAGATTGATAGACTTGATGAAGCGTACATGCTTTTTGAAGAAGCAAAGTCGAAAGGAATAGAATTGAATGTTGTTGTTTATACTAGTCTTGTCGATGGGTTTGGGAAGGTGGGGAGAATTGATGAAGCATATCTAATCATGGAAGAGTTGATGCAAAAAGGTTTGTCACCTAACGTGTATACCTATAATTGCTTGCTCGATGCACTTGTTAAAGCTGGTGAAATTGATGAAGCAATTGTATCCTTTCAATCTATGAAAAATATGAACTGTACACCCAACCGTTATACTTATAATATTCTCATAAACGGTCTTTGTCGAGTTAGAAAATTCAACAAGGCTTTTGTGTACTGGCAAGAAATGAAGAAACAGGGAATAGATCCCAACGCAGTCACCTACGCTACCATGATCTCTGGACTTGCAAACGCTGGGAACATAAGGGATGCTACTGGGCTTTTTGAGAGGTTTAAGGCTAGTGGTGGTATTCCAGATTCTGTTTGTTATAATGCTATGATAGAAGGTTTAAGCAGTGGAGATAAGGCAATGGAAGCATATGCACTTTTTGAGGAAACCCGGCGGAAAGGCTGTACTATTAATACCAAGACATGTGTTGTTCTATTGGATGCGCTGCACAAAGCTGAATGCCTTGAACAAGCAGCAATAGTGGGTGCTGTACTGAGGGAAACTGCAAAGTCTCAGCATTCATCAAGATCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

897

Amino Acids

99.98

Weight (kDa)

6.52

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 99 - 255 7.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 214 - 275 6.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 223 - 255 2.6e-06 PPR repeat
PPR_2 PF13041 228 - 263 9.6e-07 PPR repeat family
PPR PF01535 231 - 259 2.1e-06 PPR repeat
PPR_long PF17177 239 - 382 1.1e-07 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 261 - 357 8e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 262 - 310 2.4e-16 PPR repeat family
PPR PF01535 264 - 294 2.1e-06 PPR repeat
PPR_3 PF13812 286 - 344 3.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 292 - 324 9.8e-12 PPR repeat
PPR PF01535 299 - 325 1.6e-07 PPR repeat
PPR_2 PF13041 299 - 325 7.8e-06 PPR repeat family
PPR_2 PF13041 331 - 368 2.8e-08 PPR repeat family
PPR_3 PF13812 333 - 380 1e-06 Pentatricopeptide repeat domain
PPR PF01535 335 - 364 1.9e-06 PPR repeat
PPR_1 PF12854 362 - 395 3.8e-07 PPR repeat
PPR_2 PF13041 366 - 396 1.3e-07 PPR repeat family
PPR PF01535 370 - 396 3.4e-06 PPR repeat
TPR_24 PF23276 374 - 497 1.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 390 - 445 1.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 400 - 429 5.8e-09 PPR repeat
PPR_2 PF13041 400 - 449 4.6e-15 PPR repeat family
PPR PF01535 403 - 433 6.1e-06 PPR repeat
PPR_1 PF12854 432 - 463 1.4e-06 PPR repeat
PPR_2 PF13041 435 - 483 1.6e-11 PPR repeat family
PPR_1 PF12854 469 - 498 5.6e-09 PPR repeat
PPR_2 PF13041 470 - 519 1.2e-10 PPR repeat family
PPR_long PF17177 488 - 605 2.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 505 - 541 4.7e-08 PPR repeat family
PPR_long PF17177 525 - 649 4.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 540 - 589 2.6e-09 PPR repeat family
PPR_1 PF12854 571 - 604 8.3e-06 PPR repeat
PPR_3 PF13812 598 - 654 1.7e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 600 - 701 4.7e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 607 - 639 3.2e-13 PPR repeat
PPR_2 PF13041 611 - 659 1.7e-17 PPR repeat family
PPR PF01535 614 - 642 1.3e-08 PPR repeat
PPR_1 PF12854 641 - 672 2.5e-07 PPR repeat
PPR_2 PF13041 647 - 694 1.5e-10 PPR repeat family
PPR_long PF17177 660 - 737 3.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 669 - 729 4.7e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 676 - 707 3.2e-07 PPR repeat
PPR_2 PF13041 681 - 729 3.5e-13 PPR repeat family
PPR_3 PF13812 704 - 760 5.4e-12 Pentatricopeptide repeat domain
TPR_24 PF23276 707 - 812 1.1e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 711 - 744 3.4e-08 PPR repeat
PPR_2 PF13041 717 - 764 1.7e-17 PPR repeat family
PPR_1 PF12854 746 - 779 8.7e-10 PPR repeat
PPR PF01535 753 - 783 3.1e-07 PPR repeat
PPR_2 PF13041 754 - 799 1.3e-16 PPR repeat family
PPR_3 PF13812 776 - 830 9.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 782 - 811 1.5e-07 PPR repeat
PPR_2 PF13041 820 - 869 3.2e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06920 AT3G06920 AT3G06920
fragaria_vesca FvH4_4g18230 FvH4_4g18230
malus_domestica MD08G1066700.v1.1
prunus_persica Prupe.1G135500_v2.0.a1
pyrus_communis pycom13g14370
rosa_chinensis RchiOBHm_Chr4g0422371
rosa_laevigata RLG00000007615
rosa_multiflora Rmu_sc0013245.1_g000002
rosa_roxburghii Rroxscaffold_5G00364490
rosa_rugosa Rorug04G0179500
rosa_samantha Rh4AG239000 Rh4AG239400 Rh4BG242600 Rh4CG254000 Rh4DG238100
rosa_wichuraiana Rw4G020660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 798, 1008, 2265, 2475
Acc36I ACCTGC 3 cut(s) 232, 1235, 1258
AccB7I CCANNNNNTGG 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 1262
AccI GTMKAC 3 cut(s) 611, 1227, 2153
AciI CCGC 4 cut(s) 331, 1260, 1769, 2548
AclWI GGATC 3 cut(s) 435, 1398, 2345
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 4 cut(s) 412, 563, 851, 2300
AcuI CTGAAG 2 cut(s) 659, 1173
AfaI GTAC 7 cut(s) 377, 990, 2000, 2245, 2321, 2560, 2646
AfiI CCNNNNNNNGG 4 cut(s) 202, 397, 408, 1542
AflII CTTAAG 1 cut(s) 289
AflIII ACRYGT 2 cut(s) 2148, 2576
AhlI ACTAGT 1 cut(s) 2057
AjiI CACGTC 1 cut(s) 1454
AjnI CCWGG 4 cut(s) 201, 390, 401, 845
AjuI GAANNNNNNNTTGG 4 cut(s) 76, 108, 264, 296
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
Alw21I GWGCWC 2 cut(s) 607, 924
Alw26I GTCTC 2 cut(s) 166, 2670
AlwI GGATC 3 cut(s) 435, 1398, 2345
AlwNI CAGNNNCTG 3 cut(s) 520, 1903, 2465
Ama87I CYCGRG 1 cut(s) 1836
AoxI GGCC 5 cut(s) 399, 724, 843, 1257, 1756
ApeKI GCWGC 5 cut(s) 737, 1193, 1611, 2599, 2627
ApoI RAATTY 4 cut(s) 412, 563, 851, 2300
AseI ATTAAT 2 cut(s) 321, 2565
Asp700I GAANNNNTTC 1 cut(s) 1550
AspA2I CCTAGG 1 cut(s) 1132
AspLEI GCGC 1 cut(s) 2599
AspS9I GGNCC 3 cut(s) 212, 221, 464
AsuC2I CCSGG 2 cut(s) 572, 2545
AsuHPI GGTGA 5 cut(s) 1679, 1894, 2133, 2204, 2356
AvaI CYCGRG 1 cut(s) 1836
AvaII GGWCC 3 cut(s) 212, 221, 464
AvrII CCTAGG 1 cut(s) 1132
BalI TGGCCA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 607
BbsI GAAGAC 2 cut(s) 1190, 1456
Bbv12I GWGCWC 2 cut(s) 607, 924
BbvI GCAGC 5 cut(s) 724, 1205, 1598, 2586, 2639
BciT130I CCWGG 4 cut(s) 203, 392, 403, 847
BciVI GTATCC 1 cut(s) 2224
BclI TGATCA 2 cut(s) 1017, 1504
BcnI CCSGG 2 cut(s) 572, 2545
BcoDI GTCTC 2 cut(s) 166, 2670
BcuI ACTAGT 1 cut(s) 2057
BfaI CTAG 6 cut(s) 665, 1133, 1496, 1710, 2058, 2445
BfmI CTRYAG 4 cut(s) 43, 951, 1265, 1521
BfrI CTTAAG 1 cut(s) 289
BfuAI ACCTGC 3 cut(s) 232, 1235, 1258
BfuI GTATCC 1 cut(s) 2224
BglII AGATCT 2 cut(s) 1148, 1685
BisI GCNGC 6 cut(s) 738, 1194, 1260, 1612, 2600, 2628
BlnI CCTAGG 1 cut(s) 1132
BlsI GCNGC 6 cut(s) 739, 1195, 1261, 1613, 2601, 2629
Bme1390I CCNGG 6 cut(s) 203, 392, 403, 572, 847, 2545
Bme18I GGWCC 3 cut(s) 212, 221, 464
BmeT110I CYCGRG 1 cut(s) 1836
BmgBI CACGTC 1 cut(s) 1454
BmgT120I GGNCC 3 cut(s) 212, 221, 464
BmiI GGNNCC 2 cut(s) 121, 222
BmrFI CCNGG 6 cut(s) 203, 392, 403, 572, 847, 2545
BmrI ACTGGG 1 cut(s) 2430
BmuI ACTGGG 1 cut(s) 2430
BpiI GAAGAC 2 cut(s) 1190, 1456
BpmI CTGGAG 3 cut(s) 120, 224, 1925
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 572, 2545
BsaBI GATNNNNATC 1 cut(s) 1503
BsaJI CCNNGG 5 cut(s) 16, 123, 215, 717, 1132
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 397, 408, 1542
Bse1I ACTGG 2 cut(s) 2327, 2425
Bse3DI GCAATG 1 cut(s) 2520
Bse8I GATNNNNATC 1 cut(s) 1503
BseBI CCWGG 4 cut(s) 203, 392, 403, 847
BseDI CCNNGG 5 cut(s) 16, 123, 215, 717, 1132
BseGI GGATG 7 cut(s) 760, 979, 1282, 1532, 1579, 2419, 2599
BseJI GATNNNNATC 1 cut(s) 1503
BseLI CCNNNNNNNGG 4 cut(s) 202, 397, 408, 1542
BseMI GCAATG 1 cut(s) 2520
BseMII CTCAG 4 cut(s) 512, 924, 2639, 2681
BseNI ACTGG 2 cut(s) 2327, 2425
BseRI GAGGAG 3 cut(s) 980, 1712, 1747
BseXI GCAGC 5 cut(s) 724, 1205, 1598, 2586, 2639
BseYI CCCAGC 1 cut(s) 2399
BsgI GTGCAG 2 cut(s) 231, 2585
BshFI GGCC 5 cut(s) 401, 726, 845, 1259, 1758
BsiHKAI GWGCWC 2 cut(s) 607, 924
BsiHKCI CYCGRG 1 cut(s) 1836
BsiSI CCGG 3 cut(s) 456, 572, 2545
BslFI GGGAC 2 cut(s) 103, 234
BslI CCNNNNNNNGG 4 cut(s) 202, 397, 408, 1542
BsmAI GTCTC 2 cut(s) 166, 2670
BsmFI GGGAC 2 cut(s) 103, 234
BsmI GAATGC 4 cut(s) 241, 1092, 2618, 2671
BsnI GGCC 5 cut(s) 401, 726, 845, 1259, 1758
BsoBI CYCGRG 1 cut(s) 1836
Bsp1286I GDGCHC 2 cut(s) 607, 924
Bsp1407I TGTACA 2 cut(s) 375, 2243
BspACI CCGC 4 cut(s) 331, 1260, 1769, 2548
BspANI GGCC 5 cut(s) 401, 726, 845, 1259, 1758
BspCNI CTCAG 4 cut(s) 513, 925, 2640, 2680
BspHI TCATGA 2 cut(s) 142, 859
BspLI GGNNCC 2 cut(s) 121, 222
BspMAI CTGCAG 1 cut(s) 1269
BspMI ACCTGC 3 cut(s) 232, 1235, 1258
BspPI GGATC 3 cut(s) 435, 1398, 2345
BspQI GCTCTTC 1 cut(s) 758
BspTI CTTAAG 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 1262
BsrDI GCAATG 1 cut(s) 2520
BsrGI TGTACA 2 cut(s) 375, 2243
BsrI ACTGG 2 cut(s) 2327, 2425
BssECI CCNNGG 5 cut(s) 16, 123, 215, 717, 1132
BssNAI GTATAC 1 cut(s) 2154
BssT1I CCWWGG 4 cut(s) 16, 215, 717, 1132
Bst1107I GTATAC 1 cut(s) 2154
Bst2UI CCWGG 4 cut(s) 203, 392, 403, 847
Bst4CI ACNGT 6 cut(s) 365, 682, 1939, 2243, 2255, 2282
Bst6I CTCTTC 3 cut(s) 758, 1453, 2112
BstAFI CTTAAG 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 813
BstAUI TGTACA 2 cut(s) 375, 2243
BstC8I GCNNGC 3 cut(s) 1294, 1971, 2168
BstDEI CTNAG 5 cut(s) 8, 521, 933, 2648, 2667
BstF5I GGATG 7 cut(s) 760, 979, 1282, 1532, 1579, 2419, 2599
BstHHI GCGC 1 cut(s) 2599
BstMAI GTCTC 2 cut(s) 166, 2670
BstMWI GCNNNNNNNGC 6 cut(s) 245, 581, 813, 1775, 1847, 2519
BstNI CCWGG 4 cut(s) 203, 392, 403, 847
BstNSI RCATGY 5 cut(s) 483, 1234, 1371, 2005, 2580
BstSCI CCNGG 6 cut(s) 201, 390, 401, 570, 845, 2543
BstSFI CTRYAG 4 cut(s) 43, 951, 1265, 1521
BstV1I GCAGC 5 cut(s) 724, 1205, 1598, 2586, 2639
BstV2I GAAGAC 2 cut(s) 1190, 1456
BstX2I RGATCY 3 cut(s) 1148, 1685, 2350
BstXI CCANNNNNNTGG 1 cut(s) 1021
BstYI RGATCY 3 cut(s) 1148, 1685, 2350
BstZ17I GTATAC 1 cut(s) 2154
BsuI GTATCC 1 cut(s) 2224
BsuRI GGCC 5 cut(s) 401, 726, 845, 1259, 1758
BtgZI GCGATG 1 cut(s) 1820
BtrI CACGTC 1 cut(s) 1454
BtsCI GGATG 7 cut(s) 760, 979, 1282, 1532, 1579, 2419, 2599
BtsI GCAGTG 2 cut(s) 1422, 2506
BtsIMutI CAGTG 4 cut(s) 361, 1422, 1935, 2506
BveI ACCTGC 3 cut(s) 232, 1235, 1258
Cac8I GCNNGC 3 cut(s) 1294, 1971, 2168
CaiI CAGNNNCTG 3 cut(s) 520, 1903, 2465
CciI TCATGA 2 cut(s) 142, 859
CfoI GCGC 1 cut(s) 2599
Cfr13I GGNCC 3 cut(s) 212, 221, 464
CseI GACGC 1 cut(s) 743
Csp6I GTAC 7 cut(s) 376, 989, 1999, 2244, 2320, 2559, 2645
CviQI GTAC 7 cut(s) 376, 989, 1999, 2244, 2320, 2559, 2645
DdeI CTNAG 5 cut(s) 8, 521, 933, 2648, 2667
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 758, 1453, 2112
EarI CTCTTC 3 cut(s) 758, 1453, 2112
EciI GGCGGA 1 cut(s) 2563
Ecl136II GAGCTC 1 cut(s) 605
Eco130I CCWWGG 4 cut(s) 16, 215, 717, 1132
Eco24I GRGCYC 1 cut(s) 607
Eco47I GGWCC 3 cut(s) 212, 221, 464
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 2 cut(s) 659, 1173
Eco88I CYCGRG 1 cut(s) 1836
EcoICRI GAGCTC 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 4 cut(s) 201, 390, 401, 845
EcoT14I CCWWGG 4 cut(s) 16, 215, 717, 1132
EcoT22I ATGCAT 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 4 cut(s) 16, 215, 717, 1132
FaqI GGGAC 2 cut(s) 103, 234
FauI CCCGC 1 cut(s) 1762
FauNDI CATATG 1 cut(s) 2524
FbaI TGATCA 2 cut(s) 1017, 1504
FblI GTMKAC 3 cut(s) 611, 1227, 2153
Fnu4HI GCNGC 6 cut(s) 738, 1194, 1260, 1612, 2600, 2628
FokI GGATG 7 cut(s) 767, 986, 1289, 1519, 1586, 2426, 2606
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 6 cut(s) 738, 1194, 1260, 1612, 2600, 2628
FspBI CTAG 6 cut(s) 665, 1133, 1496, 1710, 2058, 2445
GlaI GCGC 1 cut(s) 2598
GluI GCNGC 6 cut(s) 738, 1194, 1260, 1612, 2600, 2628
GsaI CCCAGC 1 cut(s) 2403
GsuI CTGGAG 3 cut(s) 120, 224, 1925
HaeIII GGCC 5 cut(s) 401, 726, 845, 1259, 1758
HapII CCGG 3 cut(s) 456, 572, 2545
HgaI GACGC 1 cut(s) 743
HhaI GCGC 1 cut(s) 2599
Hin6I GCGC 1 cut(s) 2597
HinP1I GCGC 1 cut(s) 2597
HincII GTYRAC 2 cut(s) 612, 733
HindII GTYRAC 2 cut(s) 612, 733
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 9 cut(s) 39, 285, 623, 1338, 1499, 1510, 1716, 1863, 2462
HpaII CCGG 3 cut(s) 456, 572, 2545
HphI GGTGA 5 cut(s) 1679, 1894, 2133, 2204, 2356
Hpy166II GTNNAC 7 cut(s) 376, 612, 733, 1228, 2154, 2246, 2320
Hpy188I TCNGA 6 cut(s) 597, 628, 1098, 1153, 1504, 1509
Hpy8I GTNNAC 7 cut(s) 376, 612, 733, 1228, 2154, 2246, 2320
HpyAV CCTTC 7 cut(s) 716, 1078, 1135, 1376, 1561, 2074, 2483
HpyCH4III ACNGT 6 cut(s) 365, 682, 1939, 2243, 2255, 2282
HpyCH4IV ACGT 3 cut(s) 25, 1453, 2148
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 581, 813, 1775, 1847, 2519
HpyF3I CTNAG 5 cut(s) 8, 521, 933, 2648, 2667
HpySE526I ACGT 3 cut(s) 25, 1453, 2148
HspAI GCGC 1 cut(s) 2597
Ksp22I TGATCA 2 cut(s) 1017, 1504
LguI GCTCTTC 1 cut(s) 758
LmnI GCTCC 5 cut(s) 9, 602, 661, 1635, 1734
Lsp1109I GCAGC 5 cut(s) 724, 1205, 1598, 2586, 2639
MaeI CTAG 6 cut(s) 665, 1133, 1496, 1710, 2058, 2445
MaeII ACGT 3 cut(s) 25, 1453, 2148
MaeIII GTNAC 8 cut(s) 510, 676, 895, 1417, 1577, 1942, 2139, 2362
MbiI CCGCTC 1 cut(s) 1262
MfeI CAATTG 1 cut(s) 2208
MflI RGATCY 3 cut(s) 1148, 1685, 2350
MhlI GDGCHC 2 cut(s) 607, 924
MlsI TGGCCA 1 cut(s) 401
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 2 cut(s) 294, 1332
MmeI TCCRAC 2 cut(s) 732, 1018
Mox20I TGGCCA 1 cut(s) 401
Mph1103I ATGCAT 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 1550
MscI TGGCCA 1 cut(s) 401
MslI CAYNNNNRTG 2 cut(s) 33, 1019
Msp20I TGGCCA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 3 cut(s) 456, 572, 2545
MspR9I CCNGG 6 cut(s) 203, 392, 403, 572, 847, 2545
MunI CAATTG 1 cut(s) 2208
Mva1269I GAATGC 4 cut(s) 241, 1092, 2618, 2671
MvaI CCWGG 4 cut(s) 203, 392, 403, 847
MwoI GCNNNNNNNGC 6 cut(s) 245, 581, 813, 1775, 1847, 2519
NciI CCSGG 2 cut(s) 572, 2545
NdeI CATATG 1 cut(s) 2524
NlaIV GGNNCC 2 cut(s) 121, 222
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 6 cut(s) 510, 895, 1417, 1577, 2139, 2362
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 5 cut(s) 483, 1234, 1371, 2005, 2580
PaeR7I CTCGAG 1 cut(s) 1836
PagI TCATGA 2 cut(s) 142, 859
PciI ACATGT 1 cut(s) 2576
PciSI GCTCTTC 1 cut(s) 758
PctI GAATGC 4 cut(s) 241, 1092, 2618, 2671
PdmI GAANNNNTTC 1 cut(s) 1550
PfeI GAWTC 7 cut(s) 39, 623, 1499, 1510, 1716, 1863, 2462
PflMI CCANNNNNTGG 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 6 cut(s) 739, 1195, 1261, 1613, 2601, 2629
PleI GAGTC 2 cut(s) 293, 1332
PpsI GAGTC 2 cut(s) 293, 1332
PpuMI RGGWCCY 1 cut(s) 221
PscI ACATGT 1 cut(s) 2576
PshBI ATTAAT 2 cut(s) 321, 2565
PsiI TTATAA 4 cut(s) 798, 1008, 2265, 2475
Psp124BI GAGCTC 1 cut(s) 607
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 4 cut(s) 201, 390, 401, 845
PspFI CCCAGC 1 cut(s) 2399
PspGI CCWGG 4 cut(s) 201, 390, 401, 845
PspN4I GGNNCC 2 cut(s) 121, 222
PspPI GGNCC 3 cut(s) 212, 221, 464
PspPPI RGGWCCY 1 cut(s) 221
PspXI VCTCGAGB 1 cut(s) 1836
PstI CTGCAG 1 cut(s) 1269
PstNI CAGNNNCTG 3 cut(s) 520, 1903, 2465
PsuI RGATCY 3 cut(s) 1148, 1685, 2350
RsaI GTAC 7 cut(s) 377, 990, 2000, 2245, 2321, 2560, 2646
RsaNI GTAC 7 cut(s) 376, 989, 1999, 2244, 2320, 2559, 2645
RseI CAYNNNNRTG 2 cut(s) 33, 1019
SacI GAGCTC 1 cut(s) 607
SalI GTCGAC 1 cut(s) 610
SapI GCTCTTC 1 cut(s) 758
SatI GCNGC 6 cut(s) 738, 1194, 1260, 1612, 2600, 2628
Sau96I GGNCC 3 cut(s) 212, 221, 464
SchI GAGTC 2 cut(s) 294, 1332
ScrFI CCNGG 6 cut(s) 203, 392, 403, 572, 847, 2545
SduI GDGCHC 2 cut(s) 607, 924
SfcI CTRYAG 4 cut(s) 43, 951, 1265, 1521
Sfr274I CTCGAG 1 cut(s) 1836
SinI GGWCC 3 cut(s) 212, 221, 464
SlaI CTCGAG 1 cut(s) 1836
SmiMI CAYNNNNRTG 2 cut(s) 33, 1019
SmlI CTYRAG 3 cut(s) 230, 289, 1836
SmoI CTYRAG 3 cut(s) 230, 289, 1836
SpeI ACTAGT 1 cut(s) 2057
SsiI CCGC 4 cut(s) 331, 1260, 1769, 2548
SspI AATATT 2 cut(s) 1204, 2269
SspMI CTAG 6 cut(s) 665, 1133, 1496, 1710, 2058, 2445
SstI GAGCTC 1 cut(s) 607
StyD4I CCNGG 6 cut(s) 201, 390, 401, 570, 845, 2543
StyI CCWWGG 4 cut(s) 16, 215, 717, 1132
TaaI ACNGT 6 cut(s) 365, 682, 1939, 2243, 2255, 2282
TaiI ACGT 3 cut(s) 28, 1456, 2151
TaqI TCGA 6 cut(s) 611, 1837, 2024, 2067, 2172, 2290
TaqII GACCGA 2 cut(s) 299, 1350
TatI WGTACW 5 cut(s) 375, 2243, 2319, 2558, 2644
TauI GCSGC 1 cut(s) 1262
TfiI GAWTC 7 cut(s) 39, 623, 1499, 1510, 1716, 1863, 2462
TscAI CASTG 4 cut(s) 368, 1422, 1942, 2506
TseFI GTSAC 6 cut(s) 510, 895, 1417, 1577, 2139, 2362
TseI GCWGC 5 cut(s) 737, 1193, 1611, 2599, 2627
Tsp45I GTSAC 6 cut(s) 510, 895, 1417, 1577, 2139, 2362
TspRI CASTG 4 cut(s) 368, 1422, 1942, 2506
Van91I CCANNNNNTGG 1 cut(s) 202
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 3 cut(s) 212, 221, 464
VspI ATTAAT 2 cut(s) 321, 2565
XapI RAATTY 4 cut(s) 412, 563, 851, 2300
XceI RCATGY 5 cut(s) 483, 1234, 1371, 2005, 2580
XhoI CTCGAG 1 cut(s) 1836
XmaJI CCTAGG 1 cut(s) 1132
XmiI GTMKAC 3 cut(s) 611, 1227, 2153
XmnI GAANNNNTTC 1 cut(s) 1550
XspI CTAG 6 cut(s) 665, 1133, 1496, 1710, 2058, 2445
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.