Rorug04G0179500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012544
Physical Location & Seq
Forward (+)
31499169 .. 31499651
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0179500.1

Sequence Viewer

Length: 483 bp
ATGGGTGTCTTCACTTATGAATCTGAGTTCACCTCTGTCATCCCACCAGCTAGGTTGTTCAAGGCCTTTGTCCTTGACGCCGACAACCTCATCCCCAAGATTGCTCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATCAACCTCGGTGAAGGAAGTGAATACAGCTATGTGAAGCACCAGATTGACGGAATTGACAAAGACAACTTCGTGTACAAATACAGCATGATTGAGGGAGACGCTATATCTGACAAAATCGAGAAGATCTCCTATGAGACTAAGTTGGTAGCATCTTCCGATGGAGGCTCTGTCATCAAGAGCACCAGTAACTACCACACCAAGGGTGATGTGGAGATCAAGGAAGAGCATGTCAAGGCTGGAAAAGAAAGAGCCGCTGGTCTATTCAAGATCATCGAGAGCCACCTTCTAGCCAACCCTGAGGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

160

Amino Acids

17.49

Weight (kDa)

5.25

Isoelectric Point (pI)

22.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 155 1.7e-26 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06920 AT3G06920 AT3G06920
fragaria_vesca FvH4_4g18230 FvH4_4g18230
malus_domestica MD08G1066700.v1.1
prunus_persica Prupe.1G135500_v2.0.a1
pyrus_communis pycom13g14370
rosa_chinensis RchiOBHm_Chr4g0422371
rosa_laevigata RLG00000007615
rosa_multiflora Rmu_sc0013245.1_g000002
rosa_roxburghii Rroxscaffold_5G00364490
rosa_rugosa Rorug04G0179500
rosa_samantha Rh4AG239000 Rh4AG239400 Rh4BG242600 Rh4CG254000 Rh4DG238100
rosa_wichuraiana Rw4G020660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 3 cut(s) 61, 137, 436
AluBI AGCT 2 cut(s) 50, 198
AluI AGCT 2 cut(s) 50, 198
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 2 cut(s) 261, 299
AoxI GGCC 2 cut(s) 63, 471
AsuHPI GGTGA 4 cut(s) 22, 152, 191, 386
AxyI CCTNAGG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 3 cut(s) 137, 167, 323
BcoDI GTCTC 2 cut(s) 261, 299
BfaI CTAG 2 cut(s) 51, 458
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 329
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 175, 369
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 354
Bse21I CCTNAGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 175, 369
BseGI GGATG 2 cut(s) 39, 90
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 15, 459
BseNI ACTGG 1 cut(s) 354
BshFI GGCC 2 cut(s) 65, 473
BsiHKAI GWGCWC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 2 cut(s) 261, 299
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 2 cut(s) 65, 473
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 4 cut(s) 168, 294, 384, 438
BspACI CCGC 1 cut(s) 423
BspANI GGCC 2 cut(s) 65, 473
BspCNI CTCAG 2 cut(s) 16, 460
BspLI GGNNCC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 175, 369
BssMI GATC 4 cut(s) 168, 294, 384, 438
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 24, 309, 468
BstF5I GGATG 2 cut(s) 39, 90
BstKTI GATC 4 cut(s) 171, 297, 387, 441
BstMAI GTCTC 2 cut(s) 261, 299
BstMBI GATC 4 cut(s) 168, 294, 384, 438
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 2 cut(s) 65, 473
BtsCI GGATG 2 cut(s) 39, 90
CseI GACGC 2 cut(s) 86, 278
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 256, 398
CviJI RGCY 9 cut(s) 50, 65, 198, 336, 407, 422, 450, 461, 473
CviKI_1 RGCY 9 cut(s) 50, 65, 198, 336, 407, 422, 450, 461, 473
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 24, 309, 468
DpnI GATC 4 cut(s) 170, 296, 386, 440
DpnII GATC 4 cut(s) 168, 294, 384, 438
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 2 cut(s) 65, 473
Eco81I CCTNAGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 2 cut(s) 259, 401
FaiI YATR 6 cut(s) 18, 201, 257, 275, 303, 399
FatI CATG 2 cut(s) 255, 397
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 2 cut(s) 26, 77
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 2 cut(s) 51, 458
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 2 cut(s) 65, 473
HgaI GACGC 2 cut(s) 86, 278
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 259, 401
HinfI GANTC 2 cut(s) 20, 130
HphI GGTGA 4 cut(s) 22, 152, 191, 386
Hpy166II GTNNAC 2 cut(s) 30, 244
Hpy188I TCNGA 3 cut(s) 25, 280, 328
Hpy188III TCNNGA 6 cut(s) 134, 163, 289, 346, 436, 445
Hpy8I GTNNAC 2 cut(s) 30, 244
HpyAV CCTTC 3 cut(s) 131, 176, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 24, 309, 468
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 259, 401
Kzo9I GATC 4 cut(s) 168, 294, 384, 438
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 60, 224, 367, 393, 411
LweI GCATC 1 cut(s) 329
MaeI CTAG 2 cut(s) 51, 458
MaeIII GTNAC 1 cut(s) 356
MalI GATC 4 cut(s) 170, 296, 386, 440
MboI GATC 4 cut(s) 168, 294, 384, 438
MboII GAAGA 4 cut(s) 178, 304, 315, 404
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 7 cut(s) 43, 98, 140, 185, 256, 326, 463
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 4 cut(s) 168, 294, 384, 438
NlaIII CATG 2 cut(s) 259, 401
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 401
PceI AGGCCT 2 cut(s) 65, 473
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 20, 130
PkrI GCNGC 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 4 cut(s) 168, 294, 384, 438
SduI GDGCHC 1 cut(s) 353
SetI ASST 9 cut(s) 35, 52, 56, 90, 142, 151, 177, 200, 456
SfaNI GCATC 1 cut(s) 329
Sse9I AATT 1 cut(s) 222
SseBI AGGCCT 2 cut(s) 65, 473
SsiI CCGC 1 cut(s) 423
SspMI CTAG 2 cut(s) 51, 458
StuI AGGCCT 2 cut(s) 65, 473
StyI CCWWGG 1 cut(s) 369
TaqI TCGA 2 cut(s) 288, 444
TasI AATT 1 cut(s) 222
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 2 cut(s) 20, 130
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 234
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 2 cut(s) 51, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.