FvH4_4g19410
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017489
Physical Location & Seq
Reverse (-)
23066366 .. 23067486
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19410.t1

Sequence Viewer

Length: 582 bp
ATGTTTCTTGTGGATTGGTTCTACGATATTCTTGCATCCTTGGGGCTATGGCATAAAGATGCTAGGATCTGTCTCTTAGGTCTTGATAATGCCGGAAAAACTACTTTGCTTTACATGCTCAGATTCGGGACCTTGAAGCAAAGCGTGCCCACTCAGCAACCAACCTCGAATGAGTTTTCAATAGGGAGTGTCAACTTCACTGCCTTTGATTTGGGTGGGCATCAGTCTGCTCGTAGACTCTGGAAGGACTACTATACCAAGCTGGATGCTGTAGTCTACATAGTTGATGCTTATGACCGGGAAAGATTTGCAGAGTCGAAAAGGGAGCTCGACTCTCTTCTCTCTGAAGAGTCTCTGGCAACAGTGCCGTTTCTTATATTGGGAAACAAGATCGACATACCTGATGCTGTCTCAGAGGAGGAGCTGCGTTTTTACCTCGGCCTGACCAACTTCACAACCGGTAAGGGTAAGATCAAGATGAACCATCCCAATGTCCGCCCCATCGAGGTTTTCATGTGCAGCATTGCTCGCAAGATGGGTTATGGCCAAGGATTCGAATGGCTTTCTCAGTATATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

5.68

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 7 - 192 1.4e-60 ADP-ribosylation factor family
SRPRB PF09439 20 - 140 7.4e-08 Signal recognition particle receptor beta subunit
Roc PF08477 22 - 132 4.1e-07 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 22 - 130 7.4e-06 50S ribosome-binding GTPase
Ras PF00071 23 - 140 1.7e-06 Ras family
G-alpha PF00503 45 - 133 3.6e-10 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02080
fragaria_vesca FvH4_4g19410
malus_domestica MD16G1157800.v1.1
pyrus_communis pycom13g13440
rosa_chinensis RchiOBHm_Chr4g0424441
rosa_laevigata RLG00000007474
rosa_multiflora Rmu_sc0003567.1_g000010
rosa_roxburghii Rroxscaffold_5G00366380
rosa_samantha Rh4AG253900 Rh4BG259200 Rh4CG270500 Rh4DG253700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 235, 276
AciI CCGC 1 cut(s) 496
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 505
AgeI ACCGGT 1 cut(s) 458
AgsI TTSAA 2 cut(s) 136, 180
AluBI AGCT 3 cut(s) 262, 328, 424
AluI AGCT 3 cut(s) 262, 328, 424
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 3 cut(s) 77, 357, 415
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 439, 544
ApeKI GCWGC 2 cut(s) 424, 519
AsiGI ACCGGT 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 299
AsuII TTCGAA 1 cut(s) 555
AvaII GGWCC 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 546
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 411, 531
BccI CCATC 3 cut(s) 492, 509, 529
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 77, 357, 415
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 425, 520
BlsI GCNGC 2 cut(s) 426, 521
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 6 cut(s) 44, 49, 229, 256, 277, 394
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu14I TTCGAA 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 39, 436, 547
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 522
BseDI CCNNGG 3 cut(s) 39, 436, 547
BseGI GGATG 3 cut(s) 35, 271, 484
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 4 cut(s) 133, 167, 426, 581
BseRI GAGGAG 2 cut(s) 431, 434
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 2 cut(s) 411, 531
BsgI GTGCAG 1 cut(s) 538
BshFI GGCC 2 cut(s) 441, 546
BshTI ACCGGT 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 3 cut(s) 93, 298, 459
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 3 cut(s) 77, 357, 415
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 441, 546
Bsp119I TTCGAA 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 150, 330
Bsp143I GATC 3 cut(s) 66, 390, 471
BspACI CCGC 1 cut(s) 496
BspANI GGCC 2 cut(s) 441, 546
BspCNI CTCAG 4 cut(s) 132, 166, 425, 580
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 39, 436, 547
BssMI GATC 3 cut(s) 66, 390, 471
BssT1I CCWWGG 2 cut(s) 39, 547
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 342, 342
BstAPI GCANNNNNTGC 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 146, 529
BstDEI CTNAG 5 cut(s) 76, 119, 153, 412, 567
BstF5I GGATG 3 cut(s) 35, 271, 484
BstKTI GATC 3 cut(s) 69, 393, 474
BstMAI GTCTC 3 cut(s) 77, 357, 415
BstMBI GATC 3 cut(s) 66, 390, 471
BstMWI GCNNNNNNNGC 4 cut(s) 115, 145, 154, 528
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 411, 531
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 441, 546
BtsCI GGATG 3 cut(s) 35, 271, 484
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 369
Cac8I GCNNGC 2 cut(s) 146, 529
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 129
CspAI ACCGGT 1 cut(s) 458
CviAII CATG 2 cut(s) 115, 514
CviJI RGCY 7 cut(s) 46, 262, 328, 424, 441, 546, 562
CviKI_1 RGCY 7 cut(s) 46, 262, 328, 424, 441, 546, 562
DdeI CTNAG 5 cut(s) 76, 119, 153, 412, 567
DpnI GATC 3 cut(s) 68, 392, 473
DpnII GATC 3 cut(s) 66, 390, 471
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 342, 342
EarI CTCTTC 2 cut(s) 342, 342
EciI GGCGGA 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 39, 547
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 39, 547
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 39, 547
FaeI CATG 2 cut(s) 118, 517
FaqI GGGAC 1 cut(s) 142
FatI CATG 2 cut(s) 114, 513
FblI GTMKAC 2 cut(s) 235, 276
Fnu4HI GCNGC 2 cut(s) 425, 520
FokI GGATG 3 cut(s) 22, 278, 471
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 425, 520
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 425, 520
HaeIII GGCC 2 cut(s) 441, 546
HapII CCGG 3 cut(s) 93, 298, 459
Hin1II CATG 2 cut(s) 118, 517
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 6 cut(s) 123, 237, 314, 332, 350, 552
HpaII CCGG 3 cut(s) 93, 298, 459
Hpy166II GTNNAC 3 cut(s) 193, 236, 277
Hpy188I TCNGA 3 cut(s) 122, 346, 415
Hpy188III TCNNGA 4 cut(s) 83, 127, 241, 475
Hpy8I GTNNAC 3 cut(s) 193, 236, 277
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 35, 311, 519
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 145, 154, 528
HpyF3I CTNAG 5 cut(s) 76, 119, 153, 412, 567
Hsp92II CATG 2 cut(s) 118, 517
Kzo9I GATC 3 cut(s) 66, 390, 471
LmnI GCTCC 2 cut(s) 325, 421
LpnPI CCDG 8 cut(s) 106, 226, 248, 311, 341, 414, 455, 472
Lsp1109I GCAGC 2 cut(s) 411, 531
LweI GCATC 6 cut(s) 44, 49, 229, 256, 277, 394
MaeI CTAG 1 cut(s) 63
MalI GATC 3 cut(s) 68, 392, 473
MboI GATC 3 cut(s) 66, 390, 471
MboII GAAGA 2 cut(s) 329, 359
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 150, 330
MlsI TGGCCA 1 cut(s) 546
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 4 cut(s) 231, 323, 326, 359
MnlI CCTC 5 cut(s) 175, 409, 412, 446, 499
Mox20I TGGCCA 1 cut(s) 546
MscI TGGCCA 1 cut(s) 546
MslI CAYNNNNRTG 2 cut(s) 57, 489
Msp20I TGGCCA 1 cut(s) 546
MspI CCGG 3 cut(s) 93, 298, 459
MspR9I CCNGG 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 115, 145, 154, 528
NciI CCSGG 1 cut(s) 299
NdeII GATC 3 cut(s) 66, 390, 471
NlaIII CATG 2 cut(s) 118, 517
NlaIV GGNNCC 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 417
NspI RCATGY 1 cut(s) 118
NspV TTCGAA 1 cut(s) 555
PfeI GAWTC 2 cut(s) 123, 552
PinAI ACCGGT 1 cut(s) 458
PkrI GCNGC 2 cut(s) 426, 521
PleI GAGTC 4 cut(s) 231, 322, 326, 358
PpsI GAGTC 4 cut(s) 231, 322, 326, 358
PpuMI RGGWCCY 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 129
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 57, 489
SacI GAGCTC 1 cut(s) 330
SatI GCNGC 2 cut(s) 425, 520
Sau3AI GATC 3 cut(s) 66, 390, 471
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 4 cut(s) 231, 323, 326, 359
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 2 cut(s) 150, 330
SetI ASST 9 cut(s) 82, 134, 167, 264, 330, 403, 426, 438, 510
SfaNI GCATC 6 cut(s) 44, 49, 229, 256, 277, 394
SfcI CTRYAG 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 555
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 57, 489
SsiI CCGC 1 cut(s) 496
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 2 cut(s) 39, 547
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 7 cut(s) 167, 317, 330, 393, 504, 555, 576
TfiI GAWTC 2 cut(s) 123, 552
TscAI CASTG 2 cut(s) 205, 369
TseI GCWGC 2 cut(s) 424, 519
TspDTI ATGAA 2 cut(s) 494, 502
TspRI CASTG 2 cut(s) 205, 369
VpaK11BI GGWCC 1 cut(s) 129
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 2 cut(s) 235, 276
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.