Rmu_sc0003567.1_g000010
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003567.1
Physical Location & Seq
Forward (+)
29844 .. 30435
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003567.1_g000010.1.cds

Sequence Viewer

Length: 489 bp
atgttgggttttgaagttaggcttgttcacttgcagagcttgaagcaaagcgaaccaactcagcaaccaacctcggatgatttttcaatagggagtgtccacttcacagcctttgatttgggtgggcatcagaccgctcgcagagtctggaaggattactatgcccagctggatgctgtagtctacgtaatagatgctcatgacaaggaaagatttgcagagtcgagaagggagctcgattctcttctctctgaagagtctctggcaacagtgccgtttcttattttgggaaacaagatcgacttgccttatgctgcctcagaggaggagctgcgtgcttctctcggcctgaccaacttcacaactggcaagggtaaggtcaagatgtaccattccaatgtccgccccatggaggtgttcatgtgcagcattgcccgcaagatgggttatggagaaggattcaagtggcttgctcagtatatcgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.41

Weight (kDa)

5.75

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02080
fragaria_vesca FvH4_4g19410
malus_domestica MD16G1157800.v1.1
pyrus_communis pycom13g13440
rosa_chinensis RchiOBHm_Chr4g0424441
rosa_laevigata RLG00000007474
rosa_multiflora Rmu_sc0003567.1_g000010
rosa_roxburghii Rroxscaffold_5G00366380
rosa_samantha Rh4AG253900 Rh4BG259200 Rh4CG270500 Rh4DG253700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 183
AciI CCGC 3 cut(s) 135, 403, 436
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 409, 412, 442
AgsI TTSAA 4 cut(s) 14, 43, 87, 463
AluBI AGCT 4 cut(s) 39, 169, 235, 331
AluI AGCT 4 cut(s) 39, 169, 235, 331
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 147
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 3 cut(s) 314, 331, 426
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 301, 318, 438
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 3 cut(s) 315, 332, 427
BlsI GCNGC 3 cut(s) 316, 333, 428
BmsI GCATC 3 cut(s) 136, 163, 184
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 72, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 412, 442
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 72, 408
BseGI GGATG 2 cut(s) 82, 178
BseLI CCNNNNNNNGG 3 cut(s) 409, 412, 442
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 3 cut(s) 74, 333, 488
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 338, 341
BseXI GCAGC 3 cut(s) 301, 318, 438
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 445
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 409, 412, 442
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 3 cut(s) 135, 403, 436
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 3 cut(s) 73, 332, 487
BspHI TCATGA 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 72, 408
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 249, 249
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 4 cut(s) 139, 336, 436, 471
BstDEI CTNAG 3 cut(s) 60, 319, 474
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 82, 178
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 177
BstSNI TACGTA 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 301, 318, 438
BsuRI GGCC 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 82, 178
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 4 cut(s) 139, 336, 436, 471
CaiI CAGNNNCTG 1 cut(s) 147
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 200, 409, 421
CviJI RGCY 8 cut(s) 22, 39, 110, 169, 235, 331, 348, 469
CviKI_1 RGCY 8 cut(s) 22, 39, 110, 169, 235, 331, 348, 469
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 3 cut(s) 60, 319, 474
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 249, 249
EarI CTCTTC 2 cut(s) 249, 249
EciI GGCGGA 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 203, 412, 424
FaiI YATR 7 cut(s) 162, 201, 312, 410, 422, 450, 480
FalI AAGNNNNNCTT 3 cut(s) 38, 287, 319
FatI CATG 3 cut(s) 199, 408, 420
FauI CCCGC 1 cut(s) 443
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 315, 332, 427
FokI GGATG 2 cut(s) 89, 185
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 315, 332, 427
GluI GCNGC 3 cut(s) 315, 332, 427
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 348
Hin1II CATG 3 cut(s) 203, 412, 424
HinfI GANTC 5 cut(s) 144, 221, 239, 257, 459
Hpy166II GTNNAC 3 cut(s) 28, 100, 184
Hpy188I TCNGA 4 cut(s) 76, 132, 253, 322
Hpy188III TCNNGA 4 cut(s) 148, 200, 225, 382
Hpy8I GTNNAC 3 cut(s) 28, 100, 184
HpyAV CCTTC 3 cut(s) 145, 222, 449
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 34, 218, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 3 cut(s) 60, 319, 474
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 3 cut(s) 203, 412, 424
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 232, 328
LpnPI CCDG 6 cut(s) 133, 155, 179, 248, 351, 362
Lsp1109I GCAGC 3 cut(s) 301, 318, 438
LweI GCATC 3 cut(s) 136, 163, 184
MaeII ACGT 1 cut(s) 186
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 137
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 236, 266
MhlI GDGCHC 1 cut(s) 237
MlyI GAGTC 3 cut(s) 153, 230, 266
MnlI CCTC 5 cut(s) 82, 316, 319, 328, 406
MslI CAYNNNNRTG 2 cut(s) 396, 413
MspA1I CMGCKG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 435
NcoI CCATGG 1 cut(s) 408
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 203, 412, 424
NmeAIII GCCGAG 1 cut(s) 324
PagI TCATGA 1 cut(s) 199
PfeI GAWTC 2 cut(s) 239, 459
PkrI GCNGC 3 cut(s) 316, 333, 428
PleI GAGTC 3 cut(s) 152, 229, 265
PpsI GAGTC 3 cut(s) 152, 229, 265
Ppu21I YACGTR 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 396, 413
SacI GAGCTC 1 cut(s) 237
SatI GCNGC 3 cut(s) 315, 332, 427
Sau3AI GATC 1 cut(s) 297
SchI GAGTC 3 cut(s) 153, 230, 266
SduI GDGCHC 1 cut(s) 237
SetI ASST 8 cut(s) 41, 74, 171, 189, 237, 333, 381, 417
SfaNI GCATC 3 cut(s) 136, 163, 184
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 2 cut(s) 396, 413
SnaBI TACGTA 1 cut(s) 187
SsiI CCGC 3 cut(s) 135, 403, 436
SstI GAGCTC 1 cut(s) 237
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 189
TaqI TCGA 4 cut(s) 224, 237, 300, 483
TfiI GAWTC 2 cut(s) 239, 459
TscAI CASTG 1 cut(s) 276
TseI GCWGC 3 cut(s) 314, 331, 426
TspDTI ATGAA 1 cut(s) 409
TspRI CASTG 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.