FvH4_4g24110

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
26392394 .. 26396160
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24110.t1

Sequence Viewer

Length: 1461 bp
ATGGCACCCATCAAGGGTATTCTTTCTCTGCAAAGGGCGGTTTTAGCCCGGCATCATGGTGCGAAGTGGGGACTAGGTTATAGGTTATTGAGCACTCAGGCTGCATCAACTGCTACTACTCCTCAACCTCCACCACCTCCCCCACCTCCAGAGAAAACCCATTTTGGTGGCTTGAAAGATGAAGATCGAATCTTTACCAACTTATATGGGTTGCATGACCCATTTCTTAAAGGTGCCATGAAGCGAGGTGACTGGTACAGAACCAAGGATTTAGTTATCAAAGGTGCTGATTGGATTGTTAATGAAATGAAGAAGTCTGGCCTCCGCGGACGTGGTGGTGCTGGTTTCCCATCTGGCCTCAAATGGTCTTTTATGCCAAAGGTATCTGATGGTCGTCCTTCTTATCTTGTTGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATTATGCGCCATGATCCACATAAGCTTTTAGAGGGTTGCCTGATTGCTGGGGTAGGGATGAGGGCCAGTGCTGCTTACATCTATATAAGAGGTGAATATGTGAATGAACGATTGAGCCTTGAAAAGGCCAGAAAAGAGGCTTATGCAGCTGGGCTACTGGGCAAAAATGCTTGTGGATCTGGATATGACTTTGATGTTCATATCCATTTTGGTGCTGGTGCTTATATTTGTGGTGAAGAAACTGCTCTTCTTGAGAGCCTTGAAGGCAAACAGGGCAAGCCAAGATTGAAGCCCCCTTTTCCTGCTAATGCAGGATTATATGGCTGCCCCACTACTGTTACCAATGTGGAAACAGTTGCTGTTTCTCCCACCATATTAAGGCGTGGACCAGAGTGGTTTTCTAGTTTTGGGAGGAAGAACAATGCAGGGACTAAATTGTTTTGTATCTCAGGACATGTGAACAAGCCTTGCACTGTTGAAGAGGAGATGAGTATACCCTTGAAAGAGTTATTAGAGAGGCACTGTGGAGGCGTGAGGGGTGGATGGGATAATTTGCTTGCAGTAATTCCAGGTGGTTCATCTGTTCCATTGCTTACCAAGGACATATGTAATGATGTGTTGATGGATTTTGATGCACTGAAGGCTGTCCAATCTGGGTTGGGGACTGCAGCTGTTATTGTGATGGATAAATCAACTGACATTGTTGATGCAATTGCACGGCTTTCTTACTTCTACAAGCACGAGAGCTGTGGGCAGTGCACACCCTGCAGAGAGGGAACTGGATGGCTTTGGATGATTATGGAAAGAATGAAAACTGGGAATGCAAAGTTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACGATCTGTGCTTTGGGTGATGCTGCTGCTTGGCCTGTGCAAGGTCTGATAAGGCATTTCAGGCCTGAGATGGAGAGGAGGATCAGGGAGCGTGCTGAGAGAGAGCTTCTGGAGGCAACTGCATAG

Protein Analysis

487

Amino Acids

53.33

Weight (kDa)

8.45

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_51K PF01512 103 - 272 5.2e-45 Nuo51 FMN-binding domain
SLBB_2 PF22461 297 - 379 7.3e-18 SLBB domain
SLBB PF10531 299 - 347 8.9e-06 SLBB domain
NADH_4Fe-4S PF10589 388 - 471 5e-33 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 233
AccI GTMKAC 1 cut(s) 949
AccII CGCG 1 cut(s) 327
AciI CCGC 3 cut(s) 38, 325, 327
AclWI GGATC 3 cut(s) 464, 640, 1424
AcuI CTGAAG 2 cut(s) 1115, 1289
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 4 cut(s) 14, 580, 834, 1376
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 6 cut(s) 175, 578, 719, 745, 935, 958
AjiI CACGTC 1 cut(s) 332
AjnI CCWGG 2 cut(s) 433, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AluBI AGCT 5 cut(s) 481, 605, 1127, 1203, 1441
AluI AGCT 5 cut(s) 481, 605, 1127, 1203, 1441
Alw21I GWGCWC 2 cut(s) 95, 1217
Alw44I GTGCAC 1 cut(s) 1213
AlwI GGATC 3 cut(s) 464, 640, 1424
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 6 cut(s) 319, 355, 519, 582, 1367, 1397
ApaLI GTGCAC 1 cut(s) 1213
ApeKI GCWGC 7 cut(s) 101, 527, 602, 780, 1124, 1358, 1361
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 519, 842
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 5 cut(s) 260, 560, 701, 1324, 1364
AvaII GGWCC 1 cut(s) 842
BaeGI GKGCMC 2 cut(s) 1217, 1335
BanI GGYRCC 2 cut(s) 4, 233
BauI CACGAG 1 cut(s) 1196
Bbv12I GWGCWC 2 cut(s) 95, 1217
BbvI GCAGC 7 cut(s) 88, 514, 614, 767, 1136, 1345, 1348
BccI CCATC 8 cut(s) 17, 358, 383, 993, 1072, 1132, 1233, 1399
BceAI ACGGC 1 cut(s) 1190
BciT130I CCWGG 2 cut(s) 435, 1026
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 2 cut(s) 74, 858
BfmI CTRYAG 2 cut(s) 1122, 1222
BglI GCCNNNNNGGC 1 cut(s) 720
BisI GCNGC 7 cut(s) 102, 528, 603, 781, 1125, 1359, 1362
BlsI GCNGC 7 cut(s) 103, 529, 604, 782, 1126, 1360, 1363
Bme1390I CCNGG 3 cut(s) 49, 435, 1026
Bme18I GGWCC 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 519, 842
BmiI GGNNCC 3 cut(s) 6, 235, 439
BmrFI CCNGG 3 cut(s) 49, 435, 1026
BmrI ACTGGG 2 cut(s) 623, 1281
BmsI GCATC 5 cut(s) 61, 113, 1078, 1153, 1345
BmuI ACTGGG 2 cut(s) 623, 1281
BpmI CTGGAG 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 264, 325, 1053
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 580, 834, 1376
Bse1I ACTGG 5 cut(s) 257, 522, 618, 1240, 1276
Bse3DI GCAATG 1 cut(s) 1043
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 2 cut(s) 435, 1026
BseDI CCNNGG 3 cut(s) 264, 325, 1053
BseGI GGATG 4 cut(s) 519, 1004, 1244, 1254
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 4 cut(s) 14, 580, 834, 1376
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 4 cut(s) 110, 918, 1392, 1422
BseNI ACTGG 5 cut(s) 257, 522, 618, 1240, 1276
BseRI GAGGAG 3 cut(s) 111, 953, 1426
BseSI GKGCMC 2 cut(s) 1217, 1335
BseXI GCAGC 7 cut(s) 88, 514, 614, 767, 1136, 1345, 1348
BseYI CCCAGC 2 cut(s) 503, 605
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 6 cut(s) 321, 357, 521, 584, 1369, 1399
BshNI GGYRCC 2 cut(s) 4, 233
BsiHKAI GWGCWC 2 cut(s) 95, 1217
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 3 cut(s) 84, 898, 1132
BslI CCNNNNNNNGG 4 cut(s) 14, 580, 834, 1376
BsmFI GGGAC 3 cut(s) 84, 898, 1132
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 6 cut(s) 321, 357, 521, 584, 1369, 1399
Bsp1286I GDGCHC 3 cut(s) 95, 1217, 1335
Bsp143I GATC 5 cut(s) 184, 469, 632, 1338, 1416
BspACI CCGC 3 cut(s) 38, 325, 327
BspANI GGCC 6 cut(s) 321, 357, 521, 584, 1369, 1399
BspCNI CTCAG 4 cut(s) 109, 917, 1393, 1423
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 3 cut(s) 6, 235, 439
BspMAI CTGCAG 2 cut(s) 1126, 1226
BspPI GGATC 3 cut(s) 464, 640, 1424
BspQI GCTCTTC 1 cut(s) 708
BspT107I GGYRCC 2 cut(s) 4, 233
BsrDI GCAATG 1 cut(s) 1043
BsrI ACTGG 5 cut(s) 257, 522, 618, 1240, 1276
BssECI CCNNGG 3 cut(s) 264, 325, 1053
BssMI GATC 5 cut(s) 184, 469, 632, 1338, 1416
BssNAI GTATAC 1 cut(s) 950
BssSI CACGAG 1 cut(s) 1196
BssT1I CCWWGG 2 cut(s) 264, 1053
Bst1107I GTATAC 1 cut(s) 950
Bst2BI CACGAG 1 cut(s) 1196
Bst2UI CCWGG 2 cut(s) 435, 1026
Bst4CI ACNGT 4 cut(s) 793, 811, 931, 980
Bst6I CTCTTC 3 cut(s) 708, 930, 1284
BstAPI GCANNNNNTGC 2 cut(s) 110, 1221
BstC8I GCNNGC 3 cut(s) 734, 1014, 1428
BstDEI CTNAG 4 cut(s) 96, 904, 1401, 1431
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 1312
BstENI CCTNNNNNAGG 2 cut(s) 578, 1374
BstF5I GGATG 4 cut(s) 519, 1004, 1244, 1254
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 187, 472, 635, 1341, 1419
BstMBI GATC 5 cut(s) 184, 469, 632, 1338, 1416
BstMWI GCNNNNNNNGC 9 cut(s) 44, 110, 527, 602, 720, 729, 1097, 1221, 1396
BstNI CCWGG 2 cut(s) 435, 1026
BstNSI RCATGY 2 cut(s) 914, 1303
BstPI GGTNACC 1 cut(s) 1312
BstSCI CCNGG 3 cut(s) 47, 433, 1024
BstSFI CTRYAG 2 cut(s) 1122, 1222
BstSLI GKGCMC 2 cut(s) 1217, 1335
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 7 cut(s) 88, 514, 614, 767, 1136, 1345, 1348
BstX2I RGATCY 1 cut(s) 632
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 1 cut(s) 632
BstZ17I GTATAC 1 cut(s) 950
BsuRI GGCC 6 cut(s) 321, 357, 521, 584, 1369, 1399
BtgI CCRYGG 1 cut(s) 325
BtrI CACGTC 1 cut(s) 332
BtsCI GGATG 4 cut(s) 519, 1004, 1244, 1254
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 5 cut(s) 529, 927, 976, 1091, 1217
Cac8I GCNNGC 3 cut(s) 734, 1014, 1428
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 519, 842
Cfr42I CCGCGG 1 cut(s) 328
Csp6I GTAC 1 cut(s) 256
CviAII CATG 6 cut(s) 56, 215, 238, 467, 911, 1300
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 4 cut(s) 96, 904, 1401, 1431
DpnI GATC 5 cut(s) 186, 471, 634, 1340, 1418
DpnII GATC 5 cut(s) 184, 469, 632, 1338, 1416
Eam1104I CTCTTC 3 cut(s) 708, 930, 1284
EarI CTCTTC 3 cut(s) 708, 930, 1284
Eco130I CCWWGG 2 cut(s) 264, 1053
Eco147I AGGCCT 1 cut(s) 1399
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 2 cut(s) 1115, 1289
Eco91I GGTNACC 1 cut(s) 1312
EcoNI CCTNNNNNAGG 2 cut(s) 578, 1374
EcoO65I GGTNACC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 433, 1024
EcoT14I CCWWGG 2 cut(s) 264, 1053
ErhI CCWWGG 2 cut(s) 264, 1053
FaeI CATG 6 cut(s) 59, 218, 241, 470, 914, 1303
FaqI GGGAC 3 cut(s) 84, 898, 1132
FatI CATG 6 cut(s) 55, 214, 237, 466, 910, 1299
FauNDI CATATG 1 cut(s) 1061
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 7 cut(s) 102, 528, 603, 781, 1125, 1359, 1362
FokI GGATG 4 cut(s) 526, 1011, 1251, 1261
Fsp4HI GCNGC 7 cut(s) 102, 528, 603, 781, 1125, 1359, 1362
FspBI CTAG 2 cut(s) 74, 858
GlaI GCGC 1 cut(s) 464
GluI GCNGC 7 cut(s) 102, 528, 603, 781, 1125, 1359, 1362
GsaI CCCAGC 2 cut(s) 507, 609
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 6 cut(s) 321, 357, 521, 584, 1369, 1399
HapII CCGG 1 cut(s) 49
HhaI GCGC 1 cut(s) 465
Hin1II CATG 6 cut(s) 59, 218, 241, 470, 914, 1303
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 49
HphI GGTGA 5 cut(s) 260, 560, 701, 1324, 1364
Hpy166II GTNNAC 5 cut(s) 431, 842, 916, 950, 1215
Hpy188I TCNGA 2 cut(s) 388, 1383
Hpy188III TCNNGA 6 cut(s) 149, 636, 707, 906, 1307, 1445
Hpy8I GTNNAC 5 cut(s) 431, 842, 916, 950, 1215
HpyAV CCTTC 3 cut(s) 408, 713, 1090
HpyCH4III ACNGT 4 cut(s) 793, 811, 931, 980
HpyCH4IV ACGT 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 9 cut(s) 44, 110, 527, 602, 720, 729, 1097, 1221, 1396
HpyF3I CTNAG 4 cut(s) 96, 904, 1401, 1431
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 6 cut(s) 59, 218, 241, 470, 914, 1303
HspAI GCGC 1 cut(s) 463
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 5 cut(s) 184, 469, 632, 1338, 1416
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 1 cut(s) 1423
Lsp1109I GCAGC 7 cut(s) 88, 514, 614, 767, 1136, 1345, 1348
LweI GCATC 5 cut(s) 61, 113, 1078, 1153, 1345
MaeI CTAG 2 cut(s) 74, 858
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 3 cut(s) 248, 793, 1312
MalI GATC 5 cut(s) 186, 471, 634, 1340, 1418
MboI GATC 5 cut(s) 184, 469, 632, 1338, 1416
MboII GAAGA 7 cut(s) 194, 322, 695, 704, 883, 947, 1301
MfeI CAATTG 1 cut(s) 1167
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 3 cut(s) 95, 1217, 1335
MluCI AATT 5 cut(s) 456, 890, 1006, 1020, 1167
MmeI TCCRAC 1 cut(s) 1266
MseI TTAA 3 cut(s) 228, 300, 833
MslI CAYNNNNRTG 3 cut(s) 57, 165, 666
MspA1I CMGCKG 3 cut(s) 327, 605, 1127
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 3 cut(s) 49, 435, 1026
MunI CAATTG 1 cut(s) 1167
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 2 cut(s) 435, 1026
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 9 cut(s) 44, 110, 527, 602, 720, 729, 1097, 1221, 1396
NciI CCSGG 1 cut(s) 49
NdeI CATATG 1 cut(s) 1061
NdeII GATC 5 cut(s) 184, 469, 632, 1338, 1416
NlaIII CATG 6 cut(s) 59, 218, 241, 470, 914, 1303
NlaIV GGNNCC 3 cut(s) 6, 235, 439
NmuCI GTSAC 2 cut(s) 248, 1312
NspI RCATGY 2 cut(s) 914, 1303
PceI AGGCCT 1 cut(s) 1399
PciI ACATGT 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 708
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 7 cut(s) 103, 529, 604, 782, 1126, 1360, 1363
PscI ACATGT 1 cut(s) 910
Psp6I CCWGG 2 cut(s) 433, 1024
PspEI GGTNACC 1 cut(s) 1312
PspFI CCCAGC 2 cut(s) 503, 605
PspGI CCWGG 2 cut(s) 433, 1024
PspN4I GGNNCC 3 cut(s) 6, 235, 439
PspPI GGNCC 2 cut(s) 519, 842
PstI CTGCAG 2 cut(s) 1126, 1226
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 1 cut(s) 632
PvuII CAGCTG 2 cut(s) 605, 1127
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 3 cut(s) 57, 165, 666
SacII CCGCGG 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 3 cut(s) 228, 300, 833
SatI GCNGC 7 cut(s) 102, 528, 603, 781, 1125, 1359, 1362
Sau3AI GATC 5 cut(s) 184, 469, 632, 1338, 1416
Sau96I GGNCC 2 cut(s) 519, 842
ScrFI CCNGG 3 cut(s) 49, 435, 1026
SduI GDGCHC 3 cut(s) 95, 1217, 1335
SfaNI GCATC 5 cut(s) 61, 113, 1078, 1153, 1345
SfcI CTRYAG 2 cut(s) 1122, 1222
Sfr303I CCGCGG 1 cut(s) 328
SgrBI CCGCGG 1 cut(s) 328
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 3 cut(s) 57, 165, 666
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 5 cut(s) 456, 890, 1006, 1020, 1167
SseBI AGGCCT 1 cut(s) 1399
SsiI CCGC 3 cut(s) 38, 325, 327
SspMI CTAG 2 cut(s) 74, 858
StuI AGGCCT 1 cut(s) 1399
StyD4I CCNGG 3 cut(s) 47, 433, 1024
StyI CCWWGG 2 cut(s) 264, 1053
TaaI ACNGT 4 cut(s) 793, 811, 931, 980
TaiI ACGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 187
TasI AATT 5 cut(s) 456, 890, 1006, 1020, 1167
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 3 cut(s) 228, 300, 833
Tru9I TTAA 3 cut(s) 228, 300, 833
TscAI CASTG 5 cut(s) 529, 934, 983, 1098, 1217
TseFI GTSAC 2 cut(s) 248, 1312
TseI GCWGC 7 cut(s) 101, 527, 602, 780, 1124, 1358, 1361
Tsp45I GTSAC 2 cut(s) 248, 1312
TspDTI ATGAA 9 cut(s) 195, 254, 318, 323, 438, 576, 644, 1023, 1280
TspRI CASTG 5 cut(s) 529, 934, 983, 1098, 1217
VneI GTGCAC 1 cut(s) 1213
VpaK11BI GGWCC 1 cut(s) 842
XagI CCTNNNNNAGG 2 cut(s) 578, 1374
XceI RCATGY 2 cut(s) 914, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 949
XspI CTAG 2 cut(s) 74, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.