MD13G1115400.v1.1

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
8368110 .. 8371323
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1115400.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGCACCCATCAAGGGTATACTTTCTCTGCAGAGAGCAGCTTTAGCTCGTCATCATGGTGCGAAGTGGGGCCTAGGGTTTAGATCATTTAGCACTCAGGGTGCAGCACCCTCTACTACTCCTCAACCTCCACCACCTCCTCCACCTCCTGAAAAAACCCATTTTGGTGGTTTGAAAGATGAAGACCGAATTTTCACCAACTTATATGGGTTGCACGACCCATTTCTCAAGGGTGCCATGAAACGAGGTGACTGGTACCGAACAAAAGATCTAGTTATTAAAGGTGCTGATTGGATTGTCAATGAAATGAAGAAGTCTGGCCTCCGTGGACGTGGTGGTGCTGGTTTCCCATCTGGCCTCAAATGGTCTTTTATGCCAAAAGTATCTGATGGCCGTCCATCCTATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATTATGCGCCATGACCCACACAAACTTTTAGAGGGTTGCTTGATTGCTGGTGTTGGGATGAGGGCTAGTGCTGCTTACATCTATATAAGAGGTGAATATGTGAATGAACGGTTAAACCTTGTAAAGGCCAGAAATGAAGCCTATGCAGCTGGATTACTGGGAAAAAATGCATGTGGATCTGGTTATGATTTTGATGTTCACATCCACTTTGGTGCTGGGGCCTATATTTGTGGTGAAGAAACAGCTCTTCTAGAGAGCCTTGAAGGGAAACAGGGTAAGCCAAGATTGAAGCCTCCCTTCCCTGCTAATGCAGGATTATATGGCTGCCCCACCACCGTTACAAATGTGGAAACGGTGGCTGTTTCTCCTACCATTTTGAGGCGTGGACCAGAGTGGTTTGCCAGTTTTGGGAGAAAGAACAATTCAGGGACAAAATTGTTCTGTATTTCAGGACATGTGAACAAGCCTTGCACCGTTGAGGAGGAGATGAGCATACCCTTGAAAGAGTTATTAGAGAGGCACTGTGGAGGTGTGAGGGGTGGATGGGACAATTTACTTGCAGTAATTCCAGGTGGTTCATCCGTTCCATTGCTTACCAAGGACATATGTAATGATGTATTGATGGATTTTGATGCACTGAAAGCTGTCCAGTCAGGATTGGGAACTGCAGCTGTTATTGTGATGGATAAATCGACTGACATTGTCGATGCAATTGCAAGGCTTTCTTACTTCTACAAGCATGAGAGCTGTGGGCAGTGCACACCATGCAGGGAGGGGACAGGATGGCTTTGGATGATCATGGAAAGAATGAAAGTAGGGAATGCAAAGCTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACAATCTGTGCTTTGGGTGATGCTGCTGCTTGGCCTGTGCAAGGTTTAATAAGGCATTTCAGGCCAGAGCTTGAGAGGAGGATCAGGGAGCGTGCTGAGAAGGAATTGCTGGAGGCAGCTGCTTAA

Protein Analysis

487

Amino Acids

53.18

Weight (kDa)

8.45

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_51K PF01512 103 - 272 3.7e-44 Nuo51 FMN-binding domain
SLBB_2 PF22461 297 - 379 7.3e-18 SLBB domain
SLBB PF10531 299 - 347 8.9e-06 SLBB domain
NADH_4Fe-4S PF10589 388 - 471 2.6e-32 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 3 cut(s) 4, 233, 255
AccI GTMKAC 1 cut(s) 19
AclWI GGATC 2 cut(s) 640, 1424
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 1289
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 4 cut(s) 175, 719, 745, 958
AjiI CACGTC 1 cut(s) 332
AjnI CCWGG 2 cut(s) 433, 1024
AleI CACNNNNGTG 1 cut(s) 666
Alw21I GWGCWC 1 cut(s) 1217
Alw44I GTGCAC 1 cut(s) 1213
AlwI GGATC 2 cut(s) 640, 1424
AoxI GGCC 8 cut(s) 70, 319, 355, 391, 582, 675, 1367, 1397
ApaLI GTGCAC 1 cut(s) 1213
ApoI RAATTY 1 cut(s) 189
Asp718I GGTACC 1 cut(s) 255
AspA2I CCTAGG 1 cut(s) 73
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 70, 675, 842
AsuHPI GGTGA 6 cut(s) 187, 260, 560, 701, 1324, 1364
AvaII GGWCC 1 cut(s) 842
AvrII CCTAGG 1 cut(s) 73
BaeGI GKGCMC 2 cut(s) 1217, 1335
BanI GGYRCC 3 cut(s) 4, 233, 255
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 1217
BbvI GCAGC 9 cut(s) 50, 116, 514, 614, 767, 1136, 1345, 1348, 1441
BccI CCATC 8 cut(s) 17, 358, 383, 406, 993, 1072, 1132, 1233
BceAI ACGGC 1 cut(s) 378
BcgI CGANNNNNNTGC 2 cut(s) 1151, 1185
BciT130I CCWGG 2 cut(s) 435, 1026
BclI TGATCA 1 cut(s) 1251
BfaI CTAG 4 cut(s) 74, 272, 522, 707
BfmI CTRYAG 2 cut(s) 29, 1122
BglII AGATCT 1 cut(s) 268
BlnI CCTAGG 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 435, 1026
Bme18I GGWCC 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 70, 675, 842
BmiI GGNNCC 6 cut(s) 6, 71, 235, 257, 439, 676
BmrFI CCNGG 2 cut(s) 435, 1026
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 1078, 1153, 1345
BmuI ACTGGG 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 212, 1427
BsaJI CCNNGG 3 cut(s) 73, 325, 1053
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
Bse1I ACTGG 4 cut(s) 257, 618, 858, 1105
Bse3DI GCAATG 1 cut(s) 1043
BseBI CCWGG 2 cut(s) 435, 1026
BseDI CCNNGG 3 cut(s) 73, 325, 1053
BseGI GGATG 7 cut(s) 398, 519, 657, 1004, 1034, 1244, 1254
BseLI CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 2 cut(s) 110, 1422
BseNI ACTGG 4 cut(s) 257, 618, 858, 1105
BseRI GAGGAG 5 cut(s) 111, 129, 950, 953, 1426
BseSI GKGCMC 2 cut(s) 1217, 1335
BseXI GCAGC 9 cut(s) 50, 116, 514, 614, 767, 1136, 1345, 1348, 1441
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 8 cut(s) 72, 321, 357, 393, 584, 677, 1369, 1399
BshNI GGYRCC 3 cut(s) 4, 233, 255
BsiHKAI GWGCWC 1 cut(s) 1217
BslFI GGGAC 3 cut(s) 898, 1016, 1246
BslI CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
BsmFI GGGAC 3 cut(s) 898, 1016, 1246
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 8 cut(s) 72, 321, 357, 393, 584, 677, 1369, 1399
Bsp1286I GDGCHC 2 cut(s) 1217, 1335
Bsp143I GATC 5 cut(s) 83, 268, 632, 1251, 1416
BspANI GGCC 8 cut(s) 72, 321, 357, 393, 584, 677, 1369, 1399
BspCNI CTCAG 2 cut(s) 109, 1423
BspLI GGNNCC 6 cut(s) 6, 71, 235, 257, 439, 676
BspMAI CTGCAG 2 cut(s) 33, 1126
BspPI GGATC 2 cut(s) 640, 1424
BspQI GCTCTTC 1 cut(s) 708
BspT107I GGYRCC 3 cut(s) 4, 233, 255
BsrDI GCAATG 1 cut(s) 1043
BsrI ACTGG 4 cut(s) 257, 618, 858, 1105
BssECI CCNNGG 3 cut(s) 73, 325, 1053
BssMI GATC 5 cut(s) 83, 268, 632, 1251, 1416
BssNAI GTATAC 1 cut(s) 20
BssT1I CCWWGG 2 cut(s) 73, 1053
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 435, 1026
Bst4CI ACNGT 5 cut(s) 567, 793, 811, 931, 980
Bst6I CTCTTC 2 cut(s) 708, 1284
BstAPI GCANNNNNTGC 1 cut(s) 1221
BstC8I GCNNGC 1 cut(s) 1428
BstDEI CTNAG 2 cut(s) 96, 1431
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 1312
BstENI CCTNNNNNAGG 2 cut(s) 578, 1374
BstF5I GGATG 7 cut(s) 398, 519, 657, 1004, 1034, 1244, 1254
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 86, 271, 635, 1254, 1419
BstMBI GATC 5 cut(s) 83, 268, 632, 1251, 1416
BstMWI GCNNNNNNNGC 6 cut(s) 44, 527, 602, 1097, 1221, 1396
BstNI CCWGG 2 cut(s) 435, 1026
BstNSI RCATGY 3 cut(s) 630, 914, 1303
BstPI GGTNACC 1 cut(s) 1312
BstSCI CCNGG 2 cut(s) 433, 1024
BstSFI CTRYAG 2 cut(s) 29, 1122
BstSLI GKGCMC 2 cut(s) 1217, 1335
BstV1I GCAGC 9 cut(s) 50, 116, 514, 614, 767, 1136, 1345, 1348, 1441
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 2 cut(s) 268, 632
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 2 cut(s) 268, 632
BstZ17I GTATAC 1 cut(s) 20
BsuRI GGCC 8 cut(s) 72, 321, 357, 393, 584, 677, 1369, 1399
BtgI CCRYGG 1 cut(s) 325
BtrI CACGTC 1 cut(s) 332
BtsCI GGATG 7 cut(s) 398, 519, 657, 1004, 1034, 1244, 1254
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 3 cut(s) 976, 1091, 1217
Cac8I GCNNGC 1 cut(s) 1428
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 70, 675, 842
Csp6I GTAC 1 cut(s) 256
CviAII CATG 9 cut(s) 56, 238, 467, 627, 911, 1196, 1221, 1255, 1300
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 96, 1431
DpnI GATC 5 cut(s) 85, 270, 634, 1253, 1418
DpnII GATC 5 cut(s) 83, 268, 632, 1251, 1416
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 708, 1284
EarI CTCTTC 2 cut(s) 708, 1284
Eco130I CCWWGG 2 cut(s) 73, 1053
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 1289
Eco91I GGTNACC 1 cut(s) 1312
EcoNI CCTNNNNNAGG 2 cut(s) 578, 1374
EcoO109I RGGNCCY 2 cut(s) 70, 675
EcoO65I GGTNACC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 433, 1024
EcoT14I CCWWGG 2 cut(s) 73, 1053
EcoT22I ATGCAT 1 cut(s) 628
ErhI CCWWGG 2 cut(s) 73, 1053
FaeI CATG 9 cut(s) 59, 241, 470, 630, 914, 1199, 1224, 1258, 1303
FalI AAGNNNNNCTT 4 cut(s) 737, 769, 1165, 1197
FaqI GGGAC 3 cut(s) 898, 1016, 1246
FatI CATG 9 cut(s) 55, 237, 466, 626, 910, 1195, 1220, 1254, 1299
FauNDI CATATG 1 cut(s) 1061
FbaI TGATCA 1 cut(s) 1251
FblI GTMKAC 1 cut(s) 19
FokI GGATG 7 cut(s) 385, 526, 644, 1011, 1021, 1251, 1261
FspBI CTAG 4 cut(s) 74, 272, 522, 707
GlaI GCGC 1 cut(s) 464
GsaI CCCAGC 1 cut(s) 675
HaeIII GGCC 8 cut(s) 72, 321, 357, 393, 584, 677, 1369, 1399
HhaI GCGC 1 cut(s) 465
Hin1II CATG 9 cut(s) 59, 241, 470, 630, 914, 1199, 1224, 1258, 1303
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HphI GGTGA 6 cut(s) 187, 260, 560, 701, 1324, 1364
Hpy166II GTNNAC 7 cut(s) 20, 329, 431, 655, 842, 916, 1215
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 5 cut(s) 149, 707, 906, 1110, 1307
Hpy8I GTNNAC 7 cut(s) 20, 329, 431, 655, 842, 916, 1215
HpyAV CCTTC 3 cut(s) 713, 763, 1429
HpyCH4III ACNGT 5 cut(s) 567, 793, 811, 931, 980
HpyCH4IV ACGT 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 527, 602, 1097, 1221, 1396
HpyF3I CTNAG 2 cut(s) 96, 1431
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 9 cut(s) 59, 241, 470, 630, 914, 1199, 1224, 1258, 1303
HspAI GCGC 1 cut(s) 463
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 1251
Kzo9I GATC 5 cut(s) 83, 268, 632, 1251, 1416
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 1 cut(s) 1423
Lsp1109I GCAGC 9 cut(s) 50, 116, 514, 614, 767, 1136, 1345, 1348, 1441
LweI GCATC 3 cut(s) 1078, 1153, 1345
MaeI CTAG 4 cut(s) 74, 272, 522, 707
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 3 cut(s) 248, 793, 1312
MalI GATC 5 cut(s) 85, 270, 634, 1253, 1418
MboI GATC 5 cut(s) 83, 268, 632, 1251, 1416
MboII GAAGA 5 cut(s) 194, 322, 695, 704, 1301
MfeI CAATTG 1 cut(s) 1167
MflI RGATCY 2 cut(s) 268, 632
MhlI GDGCHC 2 cut(s) 1217, 1335
MluCI AATT 8 cut(s) 189, 456, 877, 890, 1006, 1020, 1167, 1439
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 4 cut(s) 279, 569, 1382, 1459
MslI CAYNNNNRTG 3 cut(s) 57, 165, 666
MspA1I CMGCKG 3 cut(s) 605, 1127, 1454
MspR9I CCNGG 2 cut(s) 435, 1026
MunI CAATTG 1 cut(s) 1167
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 2 cut(s) 435, 1026
MwoI GCNNNNNNNGC 6 cut(s) 44, 527, 602, 1097, 1221, 1396
NdeI CATATG 1 cut(s) 1061
NdeII GATC 5 cut(s) 83, 268, 632, 1251, 1416
NlaIII CATG 9 cut(s) 59, 241, 470, 630, 914, 1199, 1224, 1258, 1303
NlaIV GGNNCC 6 cut(s) 6, 71, 235, 257, 439, 676
NmuCI GTSAC 2 cut(s) 248, 1312
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 3 cut(s) 630, 914, 1303
OliI CACNNNNGTG 1 cut(s) 666
PciI ACATGT 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 708
PctI GAATGC 1 cut(s) 1282
PflFI GACNNNGTC 1 cut(s) 1157
PscI ACATGT 1 cut(s) 910
Psp6I CCWGG 2 cut(s) 433, 1024
PspEI GGTNACC 1 cut(s) 1312
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 433, 1024
PspN4I GGNNCC 6 cut(s) 6, 71, 235, 257, 439, 676
PspPI GGNCC 3 cut(s) 70, 675, 842
PstI CTGCAG 2 cut(s) 33, 1126
PsuI RGATCY 2 cut(s) 268, 632
PsyI GACNNNGTC 1 cut(s) 1157
PvuII CAGCTG 3 cut(s) 605, 1127, 1454
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 3 cut(s) 57, 165, 666
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 4 cut(s) 279, 569, 1382, 1459
Sau3AI GATC 5 cut(s) 83, 268, 632, 1251, 1416
Sau96I GGNCC 3 cut(s) 70, 675, 842
ScrFI CCNGG 2 cut(s) 435, 1026
SduI GDGCHC 2 cut(s) 1217, 1335
SfaNI GCATC 3 cut(s) 1078, 1153, 1345
SfcI CTRYAG 2 cut(s) 29, 1122
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 3 cut(s) 57, 165, 666
SmlI CTYRAG 2 cut(s) 227, 1406
SmoI CTYRAG 2 cut(s) 227, 1406
Sse9I AATT 8 cut(s) 189, 456, 877, 890, 1006, 1020, 1167, 1439
SspMI CTAG 4 cut(s) 74, 272, 522, 707
StyD4I CCNGG 2 cut(s) 433, 1024
StyI CCWWGG 2 cut(s) 73, 1053
TaaI ACNGT 5 cut(s) 567, 793, 811, 931, 980
TaiI ACGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 1148, 1161
TaqII GACCGA 1 cut(s) 201
TasI AATT 8 cut(s) 189, 456, 877, 890, 1006, 1020, 1167, 1439
Tru1I TTAA 4 cut(s) 279, 569, 1382, 1459
Tru9I TTAA 4 cut(s) 279, 569, 1382, 1459
TscAI CASTG 3 cut(s) 983, 1098, 1217
TseFI GTSAC 2 cut(s) 248, 1312
Tsp45I GTSAC 2 cut(s) 248, 1312
TspDTI ATGAA 9 cut(s) 195, 254, 318, 323, 438, 576, 606, 1023, 1280
TspGWI ACGGA 2 cut(s) 314, 1027
TspRI CASTG 3 cut(s) 983, 1098, 1217
Tth111I GACNNNGTC 1 cut(s) 1157
VneI GTGCAC 1 cut(s) 1213
VpaK11BI GGWCC 1 cut(s) 842
XagI CCTNNNNNAGG 2 cut(s) 578, 1374
XapI RAATTY 1 cut(s) 189
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 3 cut(s) 630, 914, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmaJI CCTAGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 4 cut(s) 74, 272, 522, 707
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.