Prupe.1G231900_v2.0.a1

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
24680433 .. 24684071
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G231900.1

Sequence Viewer

Length: 1461 bp
ATGGCACCCATCAAGGGTATTCTTTCTCTGCCGAGAGCAGCTTTAGCTCGTCATCATGGTGAGAAGTGGGGCCTAGGGTTGAGATCATTCAGCACTCAGGGTGCAACAACTGCTACTACTCCTCAACCTCCACCACCTCCCCCACCTCCAGAGAAAACCCATTTTGGTGGTTTGAAAGACGAAGACCGAATTTTTACCAACTTATATGGGTCGCATGACCCATTTCTCAAAGGTGCCATGAAACGAGGTGACTGGCACAGAACCAAAGATATAGTTATTAAAGGTGCTGATTGGATTGTCAATGAAATGAAAAAGTCTGGCCTCCGTGGACGTGGTGGTGCTGGTTTCCCATCTGGCCTCAAATGGTCTTTTATGCCAAAAGTATCTGATGGACGTCCTTCCTATCTTGTTGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATTATGCGCCATGATCCACACAAACTTTTAGAGGGTTGCCTGATTGCTGGCGTTGGGATGAGGGCCAGTGCTGCTTACATCTACATAAGAGGTGAATATGTGAATGAACGGATCAACCTCGAAAAGGCCAGAAAAGAAGCCTATGAAGCTGGGTTACTGGGCAAAAATGCATGTGGATCTGGTTATGATTTTGATGTTCATATCCACTTTGGTGCTGGTGCTTATATTTGTGGTGAAGAAACAGCGCTTCTGGAGAGCCTTGAAGGGAAACAGGGGAAGCCACGATTGAAGCCTCCTTTCCCTGCTAATGCAGGGTTATATGGCTGCCCCACCACTGTTACAAATGTGGAAACGGTGGCTGTTTCTCCCACCATTTTAAGGCGTGGACCAGAGTGGTTTGCCAGTTTTGGGAGAAAGAACAATGCAGGGACAAAATTGTTTTGTATTTCAGGACATGTGAACAAGCCTTGCACAGTTGAAGAGGAGATGAGTATACCCTTGAAAGAGTTATTAGAGAGGCACTGTGGAGGTGTGAGGGGTGGATGGGACAACTTGCTTGCAGTAATTCCAGGTGGTTCATCTGTTCCACTACTTACCAAGGATATATGTAATGATGTATTGATGGATTTTGATGCCCTGAAGGCTGTCCAGTCAGGATTGGGGACTGCAGCTGTTATTGTGATGGATAAATCAACTGACATTGTGGATGCAATTGCGAGGCTTTCTTACTTCTACAAGCACGAGAGTTGTGGGCAGTGCACACCATGTAGGGAAGGGACAGGATGGCTTTGGATGATCATGGAAAGAATGAAAGTCGGGAATGCAAAGTTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACAATCTGTGCTTTGGGGGATGCTGCTGCCTGGCCTGTGCAAGGTCTAATAAGGCATTTCAGGCCAGAGCTTGAGAGGAGGATCAGGGAGCGTGCAGAGCGGGAATTGCTGGAGGCAGCTGCTTGA

Protein Analysis

487

Amino Acids

53.26

Weight (kDa)

8.14

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 397
AccB1I GGYRCC 2 cut(s) 4, 233
AccBSI CCGCTC 1 cut(s) 1435
AccI GTMKAC 1 cut(s) 949
AciI CCGC 1 cut(s) 1435
AclWI GGATC 4 cut(s) 464, 575, 640, 1424
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 1115, 1289
AcyI GRCGYC 1 cut(s) 394
AfeI AGCGCT 1 cut(s) 702
AfiI CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 5 cut(s) 175, 719, 745, 935, 958
AjiI CACGTC 1 cut(s) 332
AjnI CCWGG 3 cut(s) 433, 1024, 1364
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AleI CACNNNNGTG 1 cut(s) 666
AluBI AGCT 6 cut(s) 41, 47, 605, 1127, 1405, 1454
AluI AGCT 6 cut(s) 41, 47, 605, 1127, 1405, 1454
Alw21I GWGCWC 1 cut(s) 1217
Alw44I GTGCAC 1 cut(s) 1213
AlwI GGATC 4 cut(s) 464, 575, 640, 1424
Aor51HI AGCGCT 1 cut(s) 702
AoxI GGCC 7 cut(s) 70, 319, 355, 519, 582, 1367, 1397
ApaLI GTGCAC 1 cut(s) 1213
ApeKI GCWGC 8 cut(s) 38, 527, 780, 1124, 1358, 1361, 1451, 1454
ApoI RAATTY 1 cut(s) 189
AspA2I CCTAGG 1 cut(s) 73
AspLEI GCGC 2 cut(s) 465, 703
AspS9I GGNCC 3 cut(s) 70, 519, 842
AsuHPI GGTGA 5 cut(s) 71, 260, 560, 701, 1324
AvaII GGWCC 1 cut(s) 842
AvrII CCTAGG 1 cut(s) 73
BaeGI GKGCMC 2 cut(s) 1217, 1335
BanI GGYRCC 2 cut(s) 4, 233
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BauI CACGAG 1 cut(s) 1196
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 1217
BbvI GCAGC 7 cut(s) 50, 514, 767, 1136, 1345, 1348, 1441
BccI CCATC 7 cut(s) 17, 358, 383, 993, 1072, 1132, 1233
BciT130I CCWGG 3 cut(s) 435, 1026, 1366
BclI TGATCA 1 cut(s) 1251
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 1122
BfoI RGCGCY 1 cut(s) 704
BglI GCCNNNNNGGC 1 cut(s) 1097
BisI GCNGC 8 cut(s) 39, 528, 781, 1125, 1359, 1362, 1452, 1455
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 8 cut(s) 40, 529, 782, 1126, 1360, 1363, 1453, 1456
Bme1390I CCNGG 3 cut(s) 435, 1026, 1366
Bme18I GGWCC 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 70, 519, 842
BmiI GGNNCC 4 cut(s) 6, 71, 235, 439
BmrFI CCNGG 3 cut(s) 435, 1026, 1366
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 1078, 1153, 1345
BmuI ACTGGG 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 2 cut(s) 132, 728
BpuEI CTTGAG 1 cut(s) 1427
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 73, 325, 1053
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
Bse1I ACTGG 5 cut(s) 257, 522, 618, 858, 1105
BseBI CCWGG 3 cut(s) 435, 1026, 1366
BseDI CCNNGG 3 cut(s) 73, 325, 1053
BseGI GGATG 6 cut(s) 519, 1004, 1168, 1244, 1254, 1360
BseLI CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 5 cut(s) 257, 522, 618, 858, 1105
BseRI GAGGAG 3 cut(s) 111, 953, 1426
BseSI GKGCMC 2 cut(s) 1217, 1335
BseXI GCAGC 7 cut(s) 50, 514, 767, 1136, 1345, 1348, 1441
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 1449
BshFI GGCC 7 cut(s) 72, 321, 357, 521, 584, 1369, 1399
BshNI GGYRCC 2 cut(s) 4, 233
BsiHKAI GWGCWC 1 cut(s) 1217
BslFI GGGAC 4 cut(s) 898, 1016, 1132, 1246
BslI CCNNNNNNNGG 5 cut(s) 14, 580, 834, 864, 1376
BsmFI GGGAC 4 cut(s) 898, 1016, 1132, 1246
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 7 cut(s) 72, 321, 357, 521, 584, 1369, 1399
Bsp1286I GDGCHC 2 cut(s) 1217, 1335
Bsp143I GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
BspACI CCGC 1 cut(s) 1435
BspANI GGCC 7 cut(s) 72, 321, 357, 521, 584, 1369, 1399
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 4 cut(s) 6, 71, 235, 439
BspMAI CTGCAG 1 cut(s) 1126
BspPI GGATC 4 cut(s) 464, 575, 640, 1424
BspT107I GGYRCC 2 cut(s) 4, 233
BsrBI CCGCTC 1 cut(s) 1435
BsrI ACTGG 5 cut(s) 257, 522, 618, 858, 1105
BssECI CCNNGG 3 cut(s) 73, 325, 1053
BssMI GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
BssNAI GTATAC 1 cut(s) 950
BssNI GRCGYC 1 cut(s) 394
BssSI CACGAG 1 cut(s) 1196
BssT1I CCWWGG 2 cut(s) 73, 1053
Bst1107I GTATAC 1 cut(s) 950
Bst2BI CACGAG 1 cut(s) 1196
Bst2UI CCWGG 3 cut(s) 435, 1026, 1366
Bst4CI ACNGT 4 cut(s) 793, 811, 931, 980
Bst6I CTCTTC 2 cut(s) 930, 1284
BstACI GRCGYC 1 cut(s) 394
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 505, 1014, 1428
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 1312
BstENI CCTNNNNNAGG 2 cut(s) 578, 1374
BstF5I GGATG 6 cut(s) 519, 1004, 1168, 1244, 1254, 1360
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 2 cut(s) 465, 703
BstKTI GATC 6 cut(s) 86, 472, 570, 635, 1254, 1419
BstMBI GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
BstMWI GCNNNNNNNGC 8 cut(s) 44, 110, 527, 602, 1097, 1396, 1432, 1441
BstNI CCWGG 3 cut(s) 435, 1026, 1366
BstNSI RCATGY 3 cut(s) 630, 914, 1303
BstPI GGTNACC 1 cut(s) 1312
BstSCI CCNGG 3 cut(s) 433, 1024, 1364
BstSFI CTRYAG 1 cut(s) 1122
BstSLI GKGCMC 2 cut(s) 1217, 1335
BstV1I GCAGC 7 cut(s) 50, 514, 767, 1136, 1345, 1348, 1441
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 632
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 1 cut(s) 632
BstZ17I GTATAC 1 cut(s) 950
BsuRI GGCC 7 cut(s) 72, 321, 357, 521, 584, 1369, 1399
BtgI CCRYGG 1 cut(s) 325
BtrI CACGTC 1 cut(s) 332
BtsCI GGATG 6 cut(s) 519, 1004, 1168, 1244, 1254, 1360
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 4 cut(s) 529, 789, 976, 1217
Cac8I GCNNGC 3 cut(s) 505, 1014, 1428
CfoI GCGC 2 cut(s) 465, 703
Cfr13I GGNCC 3 cut(s) 70, 519, 842
CviAII CATG 9 cut(s) 56, 215, 238, 467, 627, 911, 1221, 1255, 1300
DdeI CTNAG 1 cut(s) 96
DpnI GATC 6 cut(s) 85, 471, 569, 634, 1253, 1418
DpnII GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
Eam1104I CTCTTC 2 cut(s) 930, 1284
EarI CTCTTC 2 cut(s) 930, 1284
Eco130I CCWWGG 2 cut(s) 73, 1053
Eco47I GGWCC 1 cut(s) 842
Eco47III AGCGCT 1 cut(s) 702
Eco57I CTGAAG 2 cut(s) 1115, 1289
Eco91I GGTNACC 1 cut(s) 1312
EcoNI CCTNNNNNAGG 2 cut(s) 578, 1374
EcoO109I RGGNCCY 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 1312
EcoRII CCWGG 3 cut(s) 433, 1024, 1364
EcoT14I CCWWGG 2 cut(s) 73, 1053
EcoT22I ATGCAT 1 cut(s) 628
ErhI CCWWGG 2 cut(s) 73, 1053
FaeI CATG 9 cut(s) 59, 218, 241, 470, 630, 914, 1224, 1258, 1303
FaqI GGGAC 4 cut(s) 898, 1016, 1132, 1246
FatI CATG 9 cut(s) 55, 214, 237, 466, 626, 910, 1220, 1254, 1299
FauI CCCGC 1 cut(s) 1428
FbaI TGATCA 1 cut(s) 1251
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 8 cut(s) 39, 528, 781, 1125, 1359, 1362, 1452, 1455
FokI GGATG 6 cut(s) 526, 1011, 1175, 1251, 1261, 1367
Fsp4HI GCNGC 8 cut(s) 39, 528, 781, 1125, 1359, 1362, 1452, 1455
FspBI CTAG 1 cut(s) 74
GlaI GCGC 2 cut(s) 464, 702
GluI GCNGC 8 cut(s) 39, 528, 781, 1125, 1359, 1362, 1452, 1455
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 2 cut(s) 132, 728
HaeII RGCGCY 1 cut(s) 704
HaeIII GGCC 7 cut(s) 72, 321, 357, 521, 584, 1369, 1399
HhaI GCGC 2 cut(s) 465, 703
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 9 cut(s) 59, 218, 241, 470, 630, 914, 1224, 1258, 1303
Hin6I GCGC 2 cut(s) 463, 701
HinP1I GCGC 2 cut(s) 463, 701
HphI GGTGA 5 cut(s) 71, 260, 560, 701, 1324
Hpy166II GTNNAC 6 cut(s) 329, 431, 842, 916, 950, 1215
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 6 cut(s) 149, 707, 906, 1110, 1273, 1307
Hpy8I GTNNAC 6 cut(s) 329, 431, 842, 916, 950, 1215
HpyAV CCTTC 4 cut(s) 408, 713, 1090, 1223
HpyCH4III ACNGT 4 cut(s) 793, 811, 931, 980
HpyCH4IV ACGT 2 cut(s) 331, 394
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 110, 527, 602, 1097, 1396, 1432, 1441
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 331, 394
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 9 cut(s) 59, 218, 241, 470, 630, 914, 1224, 1258, 1303
HspAI GCGC 2 cut(s) 463, 701
Ksp22I TGATCA 1 cut(s) 1251
Kzo9I GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
LmnI GCTCC 1 cut(s) 1423
Lsp1109I GCAGC 7 cut(s) 50, 514, 767, 1136, 1345, 1348, 1441
LweI GCATC 3 cut(s) 1078, 1153, 1345
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 331, 394
MaeIII GTNAC 4 cut(s) 248, 609, 793, 1312
MalI GATC 6 cut(s) 85, 471, 569, 634, 1253, 1418
MbiI CCGCTC 1 cut(s) 1435
MboI GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
MboII GAAGA 4 cut(s) 194, 704, 947, 1301
MfeI CAATTG 1 cut(s) 1167
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 2 cut(s) 1217, 1335
MluCI AATT 6 cut(s) 189, 456, 890, 1020, 1167, 1439
MmeI TCCRAC 1 cut(s) 1266
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 2 cut(s) 279, 833
MslI CAYNNNNRTG 3 cut(s) 57, 165, 666
MspA1I CMGCKG 2 cut(s) 1127, 1454
MspR9I CCNGG 3 cut(s) 435, 1026, 1366
MunI CAATTG 1 cut(s) 1167
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 3 cut(s) 435, 1026, 1366
MwoI GCNNNNNNNGC 8 cut(s) 44, 110, 527, 602, 1097, 1396, 1432, 1441
NdeII GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
NlaIII CATG 9 cut(s) 59, 218, 241, 470, 630, 914, 1224, 1258, 1303
NlaIV GGNNCC 4 cut(s) 6, 71, 235, 439
NmeAIII GCCGAG 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 248, 1312
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 3 cut(s) 630, 914, 1303
OliI CACNNNNGTG 1 cut(s) 666
PciI ACATGT 1 cut(s) 910
PctI GAATGC 1 cut(s) 1282
PkrI GCNGC 8 cut(s) 40, 529, 782, 1126, 1360, 1363, 1453, 1456
PscI ACATGT 1 cut(s) 910
Psp6I CCWGG 3 cut(s) 433, 1024, 1364
PspEI GGTNACC 1 cut(s) 1312
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 3 cut(s) 433, 1024, 1364
PspN4I GGNNCC 4 cut(s) 6, 71, 235, 439
PspPI GGNCC 3 cut(s) 70, 519, 842
PstI CTGCAG 1 cut(s) 1126
PsuI RGATCY 1 cut(s) 632
PvuII CAGCTG 2 cut(s) 1127, 1454
RseI CAYNNNNRTG 3 cut(s) 57, 165, 666
SaqAI TTAA 2 cut(s) 279, 833
SatI GCNGC 8 cut(s) 39, 528, 781, 1125, 1359, 1362, 1452, 1455
Sau3AI GATC 6 cut(s) 83, 469, 567, 632, 1251, 1416
Sau96I GGNCC 3 cut(s) 70, 519, 842
ScrFI CCNGG 3 cut(s) 435, 1026, 1366
SduI GDGCHC 2 cut(s) 1217, 1335
SfaNI GCATC 3 cut(s) 1078, 1153, 1345
SfcI CTRYAG 1 cut(s) 1122
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 3 cut(s) 57, 165, 666
SmlI CTYRAG 1 cut(s) 1406
SmoI CTYRAG 1 cut(s) 1406
Sse9I AATT 6 cut(s) 189, 456, 890, 1020, 1167, 1439
SsiI CCGC 1 cut(s) 1435
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 433, 1024, 1364
StyI CCWWGG 2 cut(s) 73, 1053
TaaI ACNGT 4 cut(s) 793, 811, 931, 980
TaiI ACGT 2 cut(s) 334, 397
TaqI TCGA 1 cut(s) 576
TaqII GACCGA 1 cut(s) 201
TasI AATT 6 cut(s) 189, 456, 890, 1020, 1167, 1439
Tru1I TTAA 2 cut(s) 279, 833
Tru9I TTAA 2 cut(s) 279, 833
TscAI CASTG 4 cut(s) 529, 796, 983, 1217
TseFI GTSAC 2 cut(s) 248, 1312
TseI GCWGC 8 cut(s) 38, 527, 780, 1124, 1358, 1361, 1451, 1454
Tsp45I GTSAC 2 cut(s) 248, 1312
TspDTI ATGAA 9 cut(s) 254, 318, 323, 438, 576, 615, 644, 1023, 1280
TspGWI ACGGA 2 cut(s) 314, 580
TspRI CASTG 4 cut(s) 529, 796, 983, 1217
VneI GTGCAC 1 cut(s) 1213
VpaK11BI GGWCC 1 cut(s) 842
XagI CCTNNNNNAGG 2 cut(s) 578, 1374
XapI RAATTY 1 cut(s) 189
XceI RCATGY 3 cut(s) 630, 914, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmaJI CCTAGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 949
XspI CTAG 1 cut(s) 74
ZraI GACGTC 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.