MD16G1115300.v1.1

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
8219641 .. 8222718
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1115300.v1.1.491

Sequence Viewer

Length: 1458 bp
ATGGCACCCATCAAGGGTATACTTTCTCTGCAGAGAGCAGCTTTAGCTCGTCATCATGGTGCAAAGTGGGGCCTAGCGTTTAGATCATTCAGCACTCAGGGAGCAGCACCCTCTACTACTGCTCAACCTCCACCTCCGCCACCTCCCGAGAAAACTCATTTTGGTGGTTTGAAAGATGAAGACCGGATTTTCACTAACTTATATGGGTTGCACGACCCATTTCTCAAGGGTGCCATGAAACGAGGTGACTGGTACCGAACCAAAGATCTAGTTATTAAAGGTGCTGATTGGATTGTCAATGAAATGAAGAAGTCTGGCCTACGTGGACGTGGTGGTGCTGGTTTCCCATCTGGTCTCAAATGGTCTTTTATGCCAAAAGTATCCGATGGCCGTCCTTCCTATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATTATGCGCCATGACCCACACAAACTTTTAGAAGGTTGCTTGATTGCTGGTGTTGGGATGAGGGCCAGTGCTGCTTACATCTATATAAGAGGTGAATATGTAAATGAACGGTTAAACCTTGTAAAAGCTAGAAATGAAGCTTATGCAGCTGGATTACTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGATGTTCATATCCACTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAAACAGCGCTTCTGGAGAGCCTTGAAGGGAAACAGGGGAAGCCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGATTATATGGCTGTCCCACCACTGTTACAAATGTGGAAACGGTGGCTGTTTCTCCCACCATATTAAGGCGTGGACCAGAGTGGTTTGCCAGTTTTGGGAGAAAGAACAATTCAGGGACAAAATTGTTTTGTATCTCGGGACATGTGAACAAGCCTTGCACTGTTGAAGAGGAAATGAGCATACCCTTGAAAGAGTTACTAGAGAGGCACTGTGGAGGTGTGAGGGGCGGATGGGACAACTTACTTGCAGTAATTCCAGGTGGTTCATCTGTTCCATTGCTTACCAAGGATATATGCAATGATGTTTTGATGGATTTTGATGCACTGAAGGCTGTGCAGTCAGGATTGGGAACTGCAGCTGTTATTGTGATGGATAAATCAACGGACATTGTCGATGCAATTGCAAGGCTTTCTTACTTCTACAAGCATGAGAGTTGTGGGCAGTGCACACCGTGTAGGGAGGGGACAGGATGGCTATGGATGATCATGGAAAGAATGAAAGTTGGGAACGCAAAGCTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACAATCTGTGCGTTGGGTGATGCTGCTGCTTGGCCCGTGCAAGGTCTAATAAGGCATTTCAGGCCAGAGCTTGAGAGGAGGATCAGGGAGCGTGCAGAGAGGGAACTGCTGGAGGCAGCTGCTTAA

Protein Analysis

486

Amino Acids

53.1

Weight (kDa)

8.46

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_51K PF01512 102 - 271 3.7e-44 Nuo51 FMN-binding domain
SLBB_2 PF22461 296 - 378 7.3e-18 SLBB domain
SLBB PF10531 298 - 346 8.9e-06 SLBB domain
NADH_4Fe-4S PF10589 387 - 470 2.6e-32 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 4 cut(s) 4, 230, 252, 671
AccI GTMKAC 1 cut(s) 19
AciI CCGC 2 cut(s) 137, 993
AclWI GGATC 2 cut(s) 637, 1421
AcoI YGGCCR 1 cut(s) 388
AcuI CTGAAG 2 cut(s) 1112, 1286
AdeI CACNNNGTG 1 cut(s) 1218
AfaI GTAC 1 cut(s) 254
AfeI AGCGCT 1 cut(s) 699
AfiI CCNNNNNNNGG 4 cut(s) 14, 831, 861, 1373
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 5 cut(s) 172, 716, 742, 932, 955
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 2 cut(s) 430, 1021
AleI CACNNNNGTG 1 cut(s) 663
AluBI AGCT 9 cut(s) 41, 47, 581, 593, 602, 1124, 1282, 1402, 1451
AluI AGCT 9 cut(s) 41, 47, 581, 593, 602, 1124, 1282, 1402, 1451
Alw21I GWGCWC 1 cut(s) 1214
Alw26I GTCTC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 1210
AlwI GGATC 2 cut(s) 637, 1421
Ama87I CYCGRG 2 cut(s) 146, 901
Aor51HI AGCGCT 1 cut(s) 699
AoxI GGCC 6 cut(s) 70, 316, 388, 516, 1364, 1394
ApaLI GTGCAC 1 cut(s) 1210
ApeKI GCWGC 9 cut(s) 38, 104, 524, 599, 1121, 1355, 1358, 1448, 1451
Asp718I GGTACC 1 cut(s) 252
AspLEI GCGC 2 cut(s) 462, 700
AspS9I GGNCC 4 cut(s) 70, 516, 839, 1365
AsuHPI GGTGA 5 cut(s) 257, 557, 698, 1321, 1361
AvaI CYCGRG 2 cut(s) 146, 901
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 2 cut(s) 1214, 1332
BanI GGYRCC 4 cut(s) 4, 230, 252, 671
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 1214
BbvI GCAGC 8 cut(s) 50, 116, 511, 611, 1133, 1342, 1345, 1438
BccI CCATC 7 cut(s) 17, 355, 380, 990, 1069, 1129, 1230
BceAI ACGGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 1148, 1182
BciT130I CCWGG 2 cut(s) 432, 1023
BciVI GTATCC 1 cut(s) 391
BclI TGATCA 1 cut(s) 1248
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 4 cut(s) 74, 269, 582, 965
BfmI CTRYAG 2 cut(s) 29, 1119
BfoI RGCGCY 1 cut(s) 701
BfuI GTATCC 1 cut(s) 391
BglII AGATCT 1 cut(s) 265
BisI GCNGC 9 cut(s) 39, 105, 525, 600, 1122, 1356, 1359, 1449, 1452
BlsI GCNGC 9 cut(s) 40, 106, 526, 601, 1123, 1357, 1360, 1450, 1453
Bme1390I CCNGG 2 cut(s) 432, 1023
Bme18I GGWCC 1 cut(s) 839
BmeT110I CYCGRG 2 cut(s) 146, 901
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 4 cut(s) 70, 516, 839, 1365
BmiI GGNNCC 6 cut(s) 6, 71, 232, 254, 436, 673
BmrFI CCNGG 2 cut(s) 432, 1023
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 3 cut(s) 1075, 1150, 1342
BmuI ACTGGG 1 cut(s) 620
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 2 cut(s) 209, 1424
BsaAI YACGTR 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 1050
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 831, 861, 1373
Bse1I ACTGG 4 cut(s) 254, 519, 615, 855
Bse3DI GCAATG 2 cut(s) 1040, 1069
BseBI CCWGG 2 cut(s) 432, 1023
BseDI CCNNGG 1 cut(s) 1050
BseGI GGATG 4 cut(s) 516, 1001, 1241, 1251
BseLI CCNNNNNNNGG 4 cut(s) 14, 831, 861, 1373
BseMI GCAATG 2 cut(s) 1040, 1069
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 4 cut(s) 254, 519, 615, 855
BseRI GAGGAG 1 cut(s) 1423
BseSI GKGCMC 2 cut(s) 1214, 1332
BseXI GCAGC 8 cut(s) 50, 116, 511, 611, 1133, 1342, 1345, 1438
BsgI GTGCAG 2 cut(s) 1121, 1446
BshFI GGCC 6 cut(s) 72, 318, 390, 518, 1366, 1396
BshNI GGYRCC 4 cut(s) 4, 230, 252, 671
BsiHKAI GWGCWC 1 cut(s) 1214
BsiHKCI CYCGRG 2 cut(s) 146, 901
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 5 cut(s) 765, 895, 918, 1013, 1243
BslI CCNNNNNNNGG 4 cut(s) 14, 831, 861, 1373
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 5 cut(s) 765, 895, 918, 1013, 1243
BsnI GGCC 6 cut(s) 72, 318, 390, 518, 1366, 1396
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 2 cut(s) 146, 901
Bsp1286I GDGCHC 2 cut(s) 1214, 1332
Bsp143I GATC 5 cut(s) 83, 265, 629, 1248, 1413
BspACI CCGC 2 cut(s) 137, 993
BspANI GGCC 6 cut(s) 72, 318, 390, 518, 1366, 1396
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 6 cut(s) 6, 71, 232, 254, 436, 673
BspMAI CTGCAG 2 cut(s) 33, 1123
BspPI GGATC 2 cut(s) 637, 1421
BspT107I GGYRCC 4 cut(s) 4, 230, 252, 671
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 1040, 1069
BsrI ACTGG 4 cut(s) 254, 519, 615, 855
BssECI CCNNGG 1 cut(s) 1050
BssMI GATC 5 cut(s) 83, 265, 629, 1248, 1413
BssNAI GTATAC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 1050
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 432, 1023
Bst4CI ACNGT 6 cut(s) 564, 790, 808, 928, 977, 1218
Bst6I CTCTTC 2 cut(s) 927, 1281
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 1425
BstDEI CTNAG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 1309
BstF5I GGATG 4 cut(s) 516, 1001, 1241, 1251
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 2 cut(s) 462, 700
BstKTI GATC 5 cut(s) 86, 268, 632, 1251, 1416
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 5 cut(s) 83, 265, 629, 1248, 1413
BstMWI GCNNNNNNNGC 5 cut(s) 44, 524, 599, 1094, 1393
BstNI CCWGG 2 cut(s) 432, 1023
BstNSI RCATGY 2 cut(s) 911, 1300
BstPI GGTNACC 1 cut(s) 1309
BstSCI CCNGG 2 cut(s) 430, 1021
BstSFI CTRYAG 2 cut(s) 29, 1119
BstSLI GKGCMC 2 cut(s) 1214, 1332
BstV1I GCAGC 8 cut(s) 50, 116, 511, 611, 1133, 1342, 1345, 1438
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 265, 629
BstYI RGATCY 2 cut(s) 265, 629
BstZ17I GTATAC 1 cut(s) 20
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 6 cut(s) 72, 318, 390, 518, 1366, 1396
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 4 cut(s) 516, 1001, 1241, 1251
BtsI GCAGTG 1 cut(s) 1214
BtsIMutI CAGTG 6 cut(s) 526, 786, 924, 973, 1088, 1214
Cac8I GCNNGC 1 cut(s) 1425
CfoI GCGC 2 cut(s) 462, 700
Cfr13I GGNCC 4 cut(s) 70, 516, 839, 1365
Csp6I GTAC 1 cut(s) 253
CviAII CATG 7 cut(s) 56, 235, 464, 908, 1193, 1252, 1297
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 96
DpnI GATC 5 cut(s) 85, 267, 631, 1250, 1415
DpnII GATC 5 cut(s) 83, 265, 629, 1248, 1413
DraIII CACNNNGTG 1 cut(s) 1218
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 2 cut(s) 927, 1281
EarI CTCTTC 2 cut(s) 927, 1281
EciI GGCGGA 2 cut(s) 126, 1008
Eco130I CCWWGG 1 cut(s) 1050
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 839
Eco47III AGCGCT 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 1112, 1286
Eco88I CYCGRG 2 cut(s) 146, 901
Eco91I GGTNACC 1 cut(s) 1309
EcoO109I RGGNCCY 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 1309
EcoRII CCWGG 2 cut(s) 430, 1021
EcoT14I CCWWGG 1 cut(s) 1050
ErhI CCWWGG 1 cut(s) 1050
FaeI CATG 7 cut(s) 59, 238, 467, 911, 1196, 1255, 1300
FalI AAGNNNNNCTT 2 cut(s) 1162, 1194
FaqI GGGAC 5 cut(s) 765, 895, 918, 1013, 1243
FatI CATG 7 cut(s) 55, 234, 463, 907, 1192, 1251, 1296
FbaI TGATCA 1 cut(s) 1248
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 9 cut(s) 39, 105, 525, 600, 1122, 1356, 1359, 1449, 1452
FokI GGATG 4 cut(s) 523, 1008, 1248, 1258
Fsp4HI GCNGC 9 cut(s) 39, 105, 525, 600, 1122, 1356, 1359, 1449, 1452
FspBI CTAG 4 cut(s) 74, 269, 582, 965
GlaI GCGC 2 cut(s) 461, 699
GluI GCNGC 9 cut(s) 39, 105, 525, 600, 1122, 1356, 1359, 1449, 1452
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 6 cut(s) 72, 318, 390, 518, 1366, 1396
HapII CCGG 1 cut(s) 184
HhaI GCGC 2 cut(s) 462, 700
Hin1II CATG 7 cut(s) 59, 238, 467, 911, 1196, 1255, 1300
Hin6I GCGC 2 cut(s) 460, 698
HinP1I GCGC 2 cut(s) 460, 698
HindIII AAGCTT 1 cut(s) 591
HpaII CCGG 1 cut(s) 184
HphI GGTGA 5 cut(s) 257, 557, 698, 1321, 1361
Hpy166II GTNNAC 6 cut(s) 20, 326, 428, 839, 913, 1212
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 5 cut(s) 146, 704, 903, 1107, 1304
Hpy8I GTNNAC 6 cut(s) 20, 326, 428, 839, 913, 1212
HpyAV CCTTC 4 cut(s) 405, 479, 710, 1087
HpyCH4III ACNGT 6 cut(s) 564, 790, 808, 928, 977, 1218
HpyCH4IV ACGT 2 cut(s) 322, 328
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 524, 599, 1094, 1393
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 322, 328
Hsp92II CATG 7 cut(s) 59, 238, 467, 911, 1196, 1255, 1300
HspAI GCGC 2 cut(s) 460, 698
KpnI GGTACC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 1248
Kzo9I GATC 5 cut(s) 83, 265, 629, 1248, 1413
LmnI GCTCC 2 cut(s) 101, 1420
Lsp1109I GCAGC 8 cut(s) 50, 116, 511, 611, 1133, 1342, 1345, 1438
LweI GCATC 3 cut(s) 1075, 1150, 1342
MaeI CTAG 4 cut(s) 74, 269, 582, 965
MaeII ACGT 2 cut(s) 322, 328
MaeIII GTNAC 4 cut(s) 245, 790, 960, 1309
MalI GATC 5 cut(s) 85, 267, 631, 1250, 1415
MboI GATC 5 cut(s) 83, 265, 629, 1248, 1413
MboII GAAGA 5 cut(s) 191, 319, 701, 944, 1298
MfeI CAATTG 1 cut(s) 1164
MflI RGATCY 2 cut(s) 265, 629
MhlI GDGCHC 2 cut(s) 1214, 1332
MluCI AATT 5 cut(s) 453, 874, 887, 1017, 1164
MseI TTAA 4 cut(s) 276, 566, 830, 1456
MslI CAYNNNNRTG 3 cut(s) 57, 162, 663
MspA1I CMGCKG 3 cut(s) 602, 1124, 1451
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 2 cut(s) 432, 1023
MunI CAATTG 1 cut(s) 1164
MvaI CCWGG 2 cut(s) 432, 1023
MwoI GCNNNNNNNGC 5 cut(s) 44, 524, 599, 1094, 1393
NdeII GATC 5 cut(s) 83, 265, 629, 1248, 1413
NlaIII CATG 7 cut(s) 59, 238, 467, 911, 1196, 1255, 1300
NlaIV GGNNCC 6 cut(s) 6, 71, 232, 254, 436, 673
NmuCI GTSAC 2 cut(s) 245, 1309
NspI RCATGY 2 cut(s) 911, 1300
OliI CACNNNNGTG 1 cut(s) 663
PciI ACATGT 1 cut(s) 907
PflFI GACNNNGTC 1 cut(s) 1154
PkrI GCNGC 9 cut(s) 40, 106, 526, 601, 1123, 1357, 1360, 1450, 1453
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 430, 1021
PspEI GGTNACC 1 cut(s) 1309
PspGI CCWGG 2 cut(s) 430, 1021
PspN4I GGNNCC 6 cut(s) 6, 71, 232, 254, 436, 673
PspPI GGNCC 4 cut(s) 70, 516, 839, 1365
PstI CTGCAG 2 cut(s) 33, 1123
PsuI RGATCY 2 cut(s) 265, 629
PsyI GACNNNGTC 1 cut(s) 1154
PvuII CAGCTG 3 cut(s) 602, 1124, 1451
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 3 cut(s) 57, 162, 663
SaqAI TTAA 4 cut(s) 276, 566, 830, 1456
SatI GCNGC 9 cut(s) 39, 105, 525, 600, 1122, 1356, 1359, 1449, 1452
Sau3AI GATC 5 cut(s) 83, 265, 629, 1248, 1413
Sau96I GGNCC 4 cut(s) 70, 516, 839, 1365
ScrFI CCNGG 2 cut(s) 432, 1023
SduI GDGCHC 2 cut(s) 1214, 1332
SfaNI GCATC 3 cut(s) 1075, 1150, 1342
SfcI CTRYAG 2 cut(s) 29, 1119
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 3 cut(s) 57, 162, 663
SmlI CTYRAG 2 cut(s) 224, 1403
SmoI CTYRAG 2 cut(s) 224, 1403
Sse9I AATT 5 cut(s) 453, 874, 887, 1017, 1164
SsiI CCGC 2 cut(s) 137, 993
SspMI CTAG 4 cut(s) 74, 269, 582, 965
StyD4I CCNGG 2 cut(s) 430, 1021
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 6 cut(s) 564, 790, 808, 928, 977, 1218
TaiI ACGT 2 cut(s) 325, 331
TaqI TCGA 1 cut(s) 1158
TasI AATT 5 cut(s) 453, 874, 887, 1017, 1164
Tru1I TTAA 4 cut(s) 276, 566, 830, 1456
Tru9I TTAA 4 cut(s) 276, 566, 830, 1456
TscAI CASTG 6 cut(s) 526, 793, 931, 980, 1095, 1214
TseFI GTSAC 2 cut(s) 245, 1309
TseI GCWGC 9 cut(s) 38, 104, 524, 599, 1121, 1355, 1358, 1448, 1451
Tsp45I GTSAC 2 cut(s) 245, 1309
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 6 cut(s) 526, 793, 931, 980, 1095, 1214
Tth111I GACNNNGTC 1 cut(s) 1154
VneI GTGCAC 1 cut(s) 1210
VpaK11BI GGWCC 1 cut(s) 839
XceI RCATGY 2 cut(s) 911, 1300
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 4 cut(s) 74, 269, 582, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.