Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009108

Physical Location & Seq

Genomic Coordinates Reverse (-)

58811365 .. 58815099

Gene Structure 3735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG327100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAAGCGAGGTGACTGGCACAGAACCAAAGATTTAGTTATCAAGGGTTCTGATTGGATTGTTAATGAAATGAAGAAGTCTGGCCTCCGCGGACGTGGTGGTGCTGGTTTCCCATCTGGCCTCAAATGGTCTTTTATGCCAAAGGTATCCGATGGTCGCCCTTCCTATCTTGTTGTCAATGCAGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATAATGCGCCATGATCCACATAAGCTTTTAGAGGGTTGCCTGATTGCTGGCGTAGGGATGAGGGCCAGTGCTGCTTATATCTATATAAGAGGTGAATATGTGAATGAACGATTGAACCTTGAAAAGGCCAGAAAAGAAGCTTATGCAGCTGGGCTACTGGGCAAGAATGCTTGTGGATCTGGTTATGACTTTGATGTTCATATCCATTATGGTGCTGGTGCTTATATTTGTGGTGAAGAAACTGCACTTCTGGAGAGCCTTGAAGGCAAACAGGGAAAGCCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGATTATATGGCTGTCCCACTACTGTTACAAATGTGGAGACGGTGGCTGTTTCTCCCACCATTTTAAGGCGTGGACCAGAGTGGTTTTCCAGTTTTGGGAGGAAGAACAATGCAGGGACGAAATTGTTTTGTATCTCAGGACATGTTAACAAGCCTTGCACTGTTGAAGAGGAGATGAGTATACCCTTGAAAGAATTATTAGAGAGGCACTGTGGAGGCGTGAGGGGTGGATGGGATAACTTACTTGCAGTAATTCCAGGTGGTTCATCTGTTCCATTGCTTACCAAGGACATATGTAATGATGTATTGATGGATTTTGATGCACTGAAGGCTGTCCAATCTGGGTTGGGGACTGCTGCTGTTATTGTGATGGATAAATCAACTGACATTGTGGATGCAATTGCACGACTTTCTTACTTCTACAAGCATGAGAGCTGTGGGCAGTGCACACCGTGCAGAGAGGGGACTGGATGGCTTTGGATGATCATGGAAAGAATGAAAGTTGGGAATGCAAAGTTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACGATCTGTGCTTTGGGTGATGCTGCTGCTTGGCCTGTGCAAGGTCTGATAAGGCATTTCAGGCCAGAGATGGAGAGGAGGATCAGGGAGCGTGCTGAGAGGGAGCTGCTGGAGGCAGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_51K NADH_4Fe-4S SLBB

Protein Analysis

407

Amino Acids

44.8

Weight (kDa)

7.52

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_51K	PF01512	24 - 193	3.1e-45	Nuo51 FMN-binding domain
SLBB_2	PF22461	218 - 300	5.5e-18	SLBB domain
SLBB	PF10531	220 - 268	7e-06	SLBB domain
NADH_4Fe-4S	PF10589	309 - 392	1.4e-32	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08530
fragaria_vesca	FvH4_4g24110 FvH4_4g24110 FvH4_4g24110
malus_domestica	MD13G1115400.v1.1 MD16G1115300.v1.1
prunus_persica	Prupe.1G231900_v2.0.a1 Prupe.1G231900_v2.0.a1
pyrus_communis	pycom13g09990 pycom16g09780
rosa_chinensis	RchiOBHm_Chr4g0430891
rosa_laevigata	RLG00000006941
rosa_multiflora	Rmu_sc0006263.1_g000009
rosa_roxburghii	Rroxscaffold_5G00372580
rosa_rugosa	Rorug04G0247100 Rorug04G0247200
rosa_samantha	Rh4AG302600 Rh4AG303500 Rh4BG310700 Rh4CG327100 Rh4DG306900
rosa_wichuraiana	Rw4G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	88, 90
AclWI	GGATC	3 cut(s)	227, 403, 1187
AcuI	CTGAAG	2 cut(s)	878, 1052
AdeI	CACNNNGTG	1 cut(s)	984
AfiI	CCNNNNNNNGG	4 cut(s)	343, 597, 627, 1139
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	6 cut(s)	334, 341, 482, 508, 698, 721
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	196, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	1031, 1063
AluBI	AGCT	6 cut(s)	244, 359, 368, 966, 1204, 1217
AluI	AGCT	6 cut(s)	244, 359, 368, 966, 1204, 1217
Alw21I	GWGCWC	1 cut(s)	980
Alw26I	GTCTC	1 cut(s)	563
Alw44I	GTGCAC	1 cut(s)	976
AlwI	GGATC	3 cut(s)	227, 403, 1187
AoxI	GGCC	6 cut(s)	82, 118, 282, 345, 1130, 1160
ApaLI	GTGCAC	1 cut(s)	976
ApeKI	GCWGC	8 cut(s)	290, 365, 887, 1121, 1124, 1204, 1214, 1217
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	282, 605
AsuHPI	GGTGA	5 cut(s)	23, 323, 464, 1087, 1127
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	2 cut(s)	980, 1098
Bbv12I	GWGCWC	1 cut(s)	980
BbvI	GCAGC	7 cut(s)	277, 377, 874, 1108, 1111, 1191, 1204
BccI	CCATC	7 cut(s)	121, 146, 756, 835, 895, 996, 1162
BciT130I	CCWGG	2 cut(s)	198, 789
BciVI	GTATCC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	1014
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	1222
BfuI	GTATCC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	8 cut(s)	291, 366, 888, 1122, 1125, 1205, 1215, 1218
BlsI	GCNGC	8 cut(s)	292, 367, 889, 1123, 1126, 1206, 1216, 1219
Bme1390I	CCNGG	2 cut(s)	198, 789
Bme18I	GGWCC	1 cut(s)	605
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	282, 605
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	198, 789
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	841, 916, 1108
BmuI	ACTGGG	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	88, 816
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 597, 627, 1139
Bse1I	ACTGG	5 cut(s)	20, 285, 381, 621, 1003
Bse3DI	GCAATG	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	198, 789
BseDI	CCNNGG	2 cut(s)	88, 816
BseGI	GGATG	5 cut(s)	282, 767, 931, 1007, 1017
BseLI	CCNNNNNNNGG	4 cut(s)	343, 597, 627, 1139
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	681, 1185
BseNI	ACTGG	5 cut(s)	20, 285, 381, 621, 1003
BseRI	GAGGAG	2 cut(s)	716, 1189
BseSI	GKGCMC	2 cut(s)	980, 1098
BseXI	GCAGC	7 cut(s)	277, 377, 874, 1108, 1111, 1191, 1204
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	2 cut(s)	447, 1006
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	6 cut(s)	84, 120, 284, 347, 1132, 1162
BsiHKAI	GWGCWC	1 cut(s)	980
BslFI	GGGAC	4 cut(s)	531, 661, 895, 1009
BslI	CCNNNNNNNGG	4 cut(s)	343, 597, 627, 1139
BsmAI	GTCTC	1 cut(s)	563
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	4 cut(s)	531, 661, 895, 1009
BsmI	GAATGC	2 cut(s)	391, 1045
BsnI	GGCC	6 cut(s)	84, 120, 284, 347, 1132, 1162
Bsp1286I	GDGCHC	2 cut(s)	980, 1098
Bsp143I	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
BspACI	CCGC	2 cut(s)	88, 90
BspANI	GGCC	6 cut(s)	84, 120, 284, 347, 1132, 1162
BspCNI	CTCAG	2 cut(s)	680, 1186
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	227, 403, 1187
BsrDI	GCAATG	1 cut(s)	806
BsrI	ACTGG	5 cut(s)	20, 285, 381, 621, 1003
BssECI	CCNNGG	2 cut(s)	88, 816
BssMI	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
BssNAI	GTATAC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	816
Bst1107I	GTATAC	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	198, 789
Bst4CI	ACNGT	5 cut(s)	556, 574, 694, 743, 984
Bst6I	CTCTTC	2 cut(s)	693, 1047
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstC8I	GCNNGC	2 cut(s)	268, 1191
BstDEI	CTNAG	2 cut(s)	667, 1194
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	1075
BstENI	CCTNNNNNAGG	2 cut(s)	341, 1137
BstF5I	GGATG	5 cut(s)	282, 767, 931, 1007, 1017
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	5 cut(s)	235, 398, 1017, 1104, 1182
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 365, 483, 860, 984, 1159
BstNI	CCWGG	2 cut(s)	198, 789
BstNSI	RCATGY	2 cut(s)	677, 1066
BstPI	GGTNACC	1 cut(s)	1075
BstSCI	CCNGG	2 cut(s)	196, 787
BstSLI	GKGCMC	2 cut(s)	980, 1098
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	7 cut(s)	277, 377, 874, 1108, 1111, 1191, 1204
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BstZ17I	GTATAC	1 cut(s)	713
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	6 cut(s)	84, 120, 284, 347, 1132, 1162
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	5 cut(s)	282, 767, 931, 1007, 1017
BtsI	GCAGTG	1 cut(s)	980
BtsIMutI	CAGTG	5 cut(s)	292, 690, 739, 854, 980
Cac8I	GCNNGC	2 cut(s)	268, 1191
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	282, 605
Cfr42I	CCGCGG	1 cut(s)	91
CviAII	CATG	5 cut(s)	230, 674, 959, 1018, 1063
DdeI	CTNAG	2 cut(s)	667, 1194
DpnI	GATC	5 cut(s)	234, 397, 1016, 1103, 1181
DpnII	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
DraIII	CACNNNGTG	1 cut(s)	984
Eam1104I	CTCTTC	2 cut(s)	693, 1047
EarI	CTCTTC	2 cut(s)	693, 1047
Eco130I	CCWWGG	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	878, 1052
Eco91I	GGTNACC	1 cut(s)	1075
EcoNI	CCTNNNNNAGG	2 cut(s)	341, 1137
EcoO65I	GGTNACC	1 cut(s)	1075
EcoRII	CCWGG	2 cut(s)	196, 787
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	5 cut(s)	233, 677, 962, 1021, 1066
FaqI	GGGAC	4 cut(s)	531, 661, 895, 1009
FatI	CATG	5 cut(s)	229, 673, 958, 1017, 1062
FauNDI	CATATG	1 cut(s)	824
FbaI	TGATCA	1 cut(s)	1014
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	8 cut(s)	291, 366, 888, 1122, 1125, 1205, 1215, 1218
FokI	GGATG	5 cut(s)	289, 774, 938, 1014, 1024
Fsp4HI	GCNGC	8 cut(s)	291, 366, 888, 1122, 1125, 1205, 1215, 1218
FspBI	CTAG	1 cut(s)	1222
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	8 cut(s)	291, 366, 888, 1122, 1125, 1205, 1215, 1218
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	6 cut(s)	84, 120, 284, 347, 1132, 1162
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	233, 677, 962, 1021, 1066
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	2 cut(s)	242, 357
HpaI	GTTAAC	1 cut(s)	679
HphI	GGTGA	5 cut(s)	23, 323, 464, 1087, 1127
Hpy166II	GTNNAC	5 cut(s)	194, 605, 679, 713, 978
Hpy188I	TCNGA	3 cut(s)	52, 151, 1146
Hpy188III	TCNNGA	3 cut(s)	470, 669, 1070
Hpy8I	GTNNAC	5 cut(s)	194, 605, 679, 713, 978
HpyAV	CCTTC	3 cut(s)	171, 476, 853
HpyCH4III	ACNGT	5 cut(s)	556, 574, 694, 743, 984
HpyCH4IV	ACGT	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 365, 483, 860, 984, 1159
HpyF3I	CTNAG	2 cut(s)	667, 1194
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	5 cut(s)	233, 677, 962, 1021, 1066
HspAI	GCGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	1014
KspAI	GTTAAC	1 cut(s)	679
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
LmnI	GCTCC	2 cut(s)	1186, 1201
Lsp1109I	GCAGC	7 cut(s)	277, 377, 874, 1108, 1111, 1191, 1204
LweI	GCATC	3 cut(s)	841, 916, 1108
MaeI	CTAG	1 cut(s)	1222
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	11, 556, 1075
MalI	GATC	5 cut(s)	234, 397, 1016, 1103, 1181
MboI	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
MboII	GAAGA	5 cut(s)	85, 467, 646, 710, 1064
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	980, 1098
MluCI	AATT	4 cut(s)	653, 725, 783, 930
MmeI	TCCRAC	1 cut(s)	1029
MseI	TTAA	3 cut(s)	63, 596, 678
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	3 cut(s)	90, 368, 1217
MspR9I	CCNGG	2 cut(s)	198, 789
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	2 cut(s)	391, 1045
MvaI	CCWGG	2 cut(s)	198, 789
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	6 cut(s)	290, 365, 483, 860, 984, 1159
NdeI	CATATG	1 cut(s)	824
NdeII	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
NlaIII	CATG	5 cut(s)	233, 677, 962, 1021, 1066
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	11, 1075
NspI	RCATGY	2 cut(s)	677, 1066
PciI	ACATGT	1 cut(s)	673
PctI	GAATGC	2 cut(s)	391, 1045
PkrI	GCNGC	8 cut(s)	292, 367, 889, 1123, 1126, 1206, 1216, 1219
PscI	ACATGT	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	196, 787
PspEI	GGTNACC	1 cut(s)	1075
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	196, 787
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	282, 605
PsuI	RGATCY	1 cut(s)	395
PvuII	CAGCTG	2 cut(s)	368, 1217
RseI	CAYNNNNRTG	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	63, 596, 678
SatI	GCNGC	8 cut(s)	291, 366, 888, 1122, 1125, 1205, 1215, 1218
Sau3AI	GATC	5 cut(s)	232, 395, 1014, 1101, 1179
Sau96I	GGNCC	2 cut(s)	282, 605
ScrFI	CCNGG	2 cut(s)	198, 789
SduI	GDGCHC	2 cut(s)	980, 1098
SfaNI	GCATC	3 cut(s)	841, 916, 1108
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	4 cut(s)	653, 725, 783, 930
SsiI	CCGC	2 cut(s)	88, 90
SspMI	CTAG	1 cut(s)	1222
StyD4I	CCNGG	2 cut(s)	196, 787
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	5 cut(s)	556, 574, 694, 743, 984
TaiI	ACGT	1 cut(s)	97
TasI	AATT	4 cut(s)	653, 725, 783, 930
Tru1I	TTAA	3 cut(s)	63, 596, 678
Tru9I	TTAA	3 cut(s)	63, 596, 678
TscAI	CASTG	5 cut(s)	292, 697, 746, 861, 980
TseFI	GTSAC	2 cut(s)	11, 1075
TseI	GCWGC	8 cut(s)	290, 365, 887, 1121, 1124, 1204, 1214, 1217
Tsp45I	GTSAC	2 cut(s)	11, 1075
TspDTI	ATGAA	8 cut(s)	17, 81, 86, 201, 339, 407, 786, 1043
TspRI	CASTG	5 cut(s)	292, 697, 746, 861, 980
VneI	GTGCAC	1 cut(s)	976
VpaK11BI	GGWCC	1 cut(s)	605
XagI	CCTNNNNNAGG	2 cut(s)	341, 1137
XceI	RCATGY	2 cut(s)	677, 1066
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	712
XspI	CTAG	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.