FvH4_4g24970

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018712
Physical Location & Seq
Forward (+)
26912529 .. 26915203
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24970.t1

Sequence Viewer

Length: 426 bp
ATGGATCAGCTTGCCCGGAGAGATGTGACGACGGGCGTCGTTGCTGCCATTGTGATGCGACCAAGGGTGTCTGCAATTTTTGTTGCAGGTCAATGTCCCAATGAGTCCATCGATGAATTGTCGTCAGATGAACTTGCAACACCTGGTGCAAACGGGCGGTATCACGCCAACATCACAGTCGCAGCAATCAGGATCAGTTCTCAAGAGGGTGGAAGGACTTTACCCAAATTTGGGGAGTGGGATGTGAATGATCCAGCCTCAGCTGAAGGATTTACCGTCATTTTCAACAAGGCCAGAGCTGACAAGAAAAATGGTGGAAGTTTGCTTGCTGCTGTGGAAACACCAAGCAACTATGCATCCCGTAAAGAAAATAATAATAAGCAAAAGTATCCCAAAAGGAACAAGTGGCTTTGCATGGGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

142

Amino Acids

15.3

Weight (kDa)

9.1

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 69 - 103 6e-19 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018712)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24970
malus_domestica MD13G1107600.v1.1
prunus_persica Prupe.1G238800_v2.0.a1
pyrus_communis pycom16g09170
rosa_multiflora Rmu_sc0004965.1_g000022
rosa_roxburghii Rroxscaffold_5G00373580
rosa_rugosa Rorug04G0254300
rosa_samantha Rh4CG334300
rosa_wichuraiana Rw4G027090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AciI CCGC 1 cut(s) 157
AclWI GGATC 3 cut(s) 12, 200, 245
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 230, 231
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 3 cut(s) 10, 263, 299
AluI AGCT 3 cut(s) 10, 263, 299
AlwI GGATC 3 cut(s) 12, 200, 245
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 3 cut(s) 44, 182, 329
ApoI RAATTY 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 31, 194, 316
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 399
BcnI CCSGG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 3 cut(s) 45, 183, 330
BlsI GCNGC 3 cut(s) 46, 184, 331
Bme1390I CCNGG 2 cut(s) 16, 144
BmrFI CCNGG 2 cut(s) 16, 144
BmsI GCATC 2 cut(s) 45, 365
BoxI GACNNNNGTC 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 231
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 247, 356
BseLI CCNNNNNNNGG 2 cut(s) 230, 231
BseMII CTCAG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 31, 194, 316
BshFI GGCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 111
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 230, 231
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 4, 192, 250
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 272
BspDI ATCGAT 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 3 cut(s) 12, 200, 245
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 3 cut(s) 4, 192, 250
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 178, 277
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 12, 327
BstDEI CTNAG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 247, 356
BstKTI GATC 3 cut(s) 7, 195, 253
BstMBI GATC 3 cut(s) 4, 192, 250
BstNI CCWGG 1 cut(s) 144
BstPAI GACNNNNGTC 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 14, 142
BstV1I GCAGC 3 cut(s) 31, 194, 316
Bsu15I ATCGAT 1 cut(s) 111
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 293
BsuTUI ATCGAT 1 cut(s) 111
BtsCI GGATG 2 cut(s) 247, 356
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 12, 327
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 142
CviAII CATG 1 cut(s) 415
CviJI RGCY 6 cut(s) 10, 257, 263, 293, 299, 409
CviKI_1 RGCY 6 cut(s) 10, 257, 263, 293, 299, 409
DdeI CTNAG 1 cut(s) 259
DpnI GATC 3 cut(s) 6, 194, 252
DpnII GATC 3 cut(s) 4, 192, 250
DraIII CACNNNGTG 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 418
FaiI YATR 2 cut(s) 354, 416
FaqI GGGAC 1 cut(s) 81
FatI CATG 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 45, 183, 330
FokI GGATG 2 cut(s) 254, 343
Fsp4HI GCNGC 3 cut(s) 45, 183, 330
GluI GCNGC 3 cut(s) 45, 183, 330
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 418
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 190, 203
Hpy99I CGWCG 2 cut(s) 34, 41
HpyAV CCTTC 2 cut(s) 207, 260
HpyCH4III ACNGT 2 cut(s) 178, 277
HpyCH4V TGCA 6 cut(s) 74, 86, 137, 149, 356, 414
HpyF3I CTNAG 1 cut(s) 259
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 418
Kzo9I GATC 3 cut(s) 4, 192, 250
LpnPI CCDG 7 cut(s) 29, 72, 129, 156, 175, 267, 307
Lsp1109I GCAGC 3 cut(s) 31, 194, 316
LweI GCATC 2 cut(s) 45, 365
MabI ACCWGGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 25
MalI GATC 3 cut(s) 6, 194, 252
MboI GATC 3 cut(s) 4, 192, 250
MluCI AATT 3 cut(s) 75, 116, 227
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 2 cut(s) 199, 268
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 16, 144
MvaI CCWGG 1 cut(s) 144
NciI CCSGG 1 cut(s) 16
NdeII GATC 3 cut(s) 4, 192, 250
NlaIII CATG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 358
PkrI GCNGC 3 cut(s) 46, 184, 331
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 424
SatI GCNGC 3 cut(s) 45, 183, 330
Sau3AI GATC 3 cut(s) 4, 192, 250
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 16, 144
SetI ASST 5 cut(s) 12, 91, 145, 265, 301
SexAI ACCWGGT 1 cut(s) 142
SfaNI GCATC 2 cut(s) 45, 365
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 3 cut(s) 75, 116, 227
SsiI CCGC 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 14, 142
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 178, 277
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 75, 116, 227
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 3 cut(s) 44, 182, 329
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 129, 144
XapI RAATTY 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.