Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0018712

Physical Location & Seq

Genomic Coordinates Reverse (-)

7698769 .. 7699050

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1107600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTTGCTATATATAAATTGCAGTATGAGAAGGGAAGGGCGGCAGTAGGGGTAGGGGGAGCTCTACCAAAATTTGGGGAGTGGGATGTGAACGATCCGGCATCAGCTGAAGGATTTACAGTCATATTCAACAAGGCCAGAGATGACAGAAAGTCTGGTGGAACTCCATTGATTATTGCAGCAGCGGCCCCAGAAAAATATGCTTCCCGTAAAAAAAGTGGCAAATATAATAAGCTCCCCAAAAAGGTAATGATATCCATGCCTAATCATTTCACGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

94

Amino Acids

10.16

Weight (kDa)

9.89

Isoelectric Point (pI)

24.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	19 - 51	4.5e-19	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24970
malus_domestica	MD13G1107600.v1.1
prunus_persica	Prupe.1G238800_v2.0.a1
pyrus_communis	pycom16g09170
rosa_multiflora	Rmu_sc0004965.1_g000022
rosa_roxburghii	Rroxscaffold_5G00373580
rosa_rugosa	Rorug04G0254300
rosa_samantha	Rh4CG334300
rosa_wichuraiana	Rw4G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	2 cut(s)	41, 185
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	74, 244
AgsI	TTSAA	1 cut(s)	130
AhdI	GACNNNNNGTC	1 cut(s)	151
AluBI	AGCT	3 cut(s)	62, 107, 235
AluI	AGCT	3 cut(s)	62, 107, 235
Alw21I	GWGCWC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	135, 186
ApeKI	GCWGC	2 cut(s)	179, 182
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	191, 194
BisI	GCNGC	4 cut(s)	42, 180, 183, 186
BlsI	GCNGC	4 cut(s)	43, 181, 184, 187
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 244
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	74, 244
BseXI	GCAGC	2 cut(s)	191, 194
BshFI	GGCC	2 cut(s)	137, 188
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	74, 244
BsnI	GGCC	2 cut(s)	137, 188
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	2 cut(s)	41, 185
BspANI	GGCC	2 cut(s)	137, 188
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	89
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	191, 194
BsuRI	GGCC	2 cut(s)	137, 188
BtsCI	GGATG	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	187
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	5 cut(s)	62, 107, 137, 188, 235
CviKI_1	RGCY	5 cut(s)	62, 107, 137, 188, 235
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DriI	GACNNNNNGTC	1 cut(s)	151
Eam1105I	GACNNNNNGTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	1 cut(s)	262
FaiI	YATR	8 cut(s)	11, 13, 15, 27, 125, 201, 228, 260
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	42, 180, 183, 186
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	42, 180, 183, 186
GluI	GCNGC	4 cut(s)	42, 180, 183, 186
HaeIII	GGCC	2 cut(s)	137, 188
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	1 cut(s)	262
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	25, 30, 104
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	22, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	59, 240
LpnPI	CCDG	4 cut(s)	111, 141, 151, 204
Lsp1109I	GCAGC	2 cut(s)	191, 194
LweI	GCATC	1 cut(s)	110
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	17, 71, 277
MseI	TTAA	1 cut(s)	280
MspA1I	CMGCKG	2 cut(s)	107, 185
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	43, 181, 184, 187
Psp124BI	GAGCTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	4 cut(s)	42, 180, 183, 186
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	4 cut(s)	64, 109, 237, 249
SfaNI	GCATC	1 cut(s)	110
SgeI	CNNG	7 cut(s)	110, 145, 150, 168, 203, 219, 271
Sse9I	AATT	3 cut(s)	17, 71, 277
SsiI	CCGC	2 cut(s)	41, 185
SstI	GAGCTC	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	121
TasI	AATT	3 cut(s)	17, 71, 277
TauI	GCSGC	2 cut(s)	44, 188
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TseI	GCWGC	2 cut(s)	179, 182
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.