FvH4_4g28700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016649
Physical Location & Seq
Reverse (-)
29244492 .. 29245283
792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28700.t1

Sequence Viewer

Length: 792 bp
ATGGAAGACGTTTTAACGGAGAATCCGCCGCCGTCTCGATTCTTCCAGGAAGATCTGAACAACTTCACGCCTCCGTCACCGCCGATTCCCACTCCTTTCCTCGTTTTCCCAACCACCGCTGCCGACCTCAACCTTCCCCTCCGCCCCTCTCTCCTCATCGTCGCCATCTCCTCCCCCGCCCTCCACCTCTTCCACACCGCCGCCTCCAAAACCCTCGTCGGAACCCTAATCCTCCCGGAAACCTCCTTCGCCGGAAACTCCGTCCTCCCCTCTCCCAAGGACAAGTCCTGCAACCTCTACTCCCTCGACGGCAACAACCAGACTCTCCTCGTCTCCGTACAGTGCCCGGTCGCCGCCGATCGGTGCCACGCCGTCGCGAAGATTCTAATTTCCGATCAGATCGTTCCGGATAGGGTTCTGATTCTGGATTCGGTTCAGAACCGGAACTTCCGGGGGAAGCTTTCCAGGGACGAGGCGCTGGTTTTCAAGCTCGAAACGACGTCGGAGAGGAAATCGAAGTCGGTGCTCAAGGATTTGAGCTTGGAGTATTTGCCGTCGGCGAGTGTGGTGGATGGGTTGGGTGCTGCTCTGTTGGCTAAGTGTGAAATCAGAAACATCAAGGCGGTGCTTTGTGTGGCGTGGCCGGAGTTTGGTGCTGGTGTGGTGGAGCTGATCAAGTCTAGGGTTTTGCCTGCTCTGGATTTGGGGCTGAGCTTCTTCAAGGCTGATGGTGATGATTACGTAGGTTTGAGGCAAGATAAGGATCCTTTCGATTCGGATTTGTATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC1

Protein Analysis

264

Amino Acids

28.57

Weight (kDa)

5.14

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC1 PF16094 86 - 211 8.2e-07 Proteasome assembly chaperone 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25545
fragaria_vesca FvH4_4g28700
malus_domestica MD13G1053100.v1.1 MD16G1052100.v1.1
rosa_chinensis RchiOBHm_Chr4g0436821
rosa_laevigata RLG00000006494
rosa_multiflora Rmu_sc0001837.1_g000014
rosa_roxburghii Rroxscaffold_5G00377890
rosa_rugosa Rorug04G0296500
rosa_samantha Rh4AG350800 Rh4BG359800 Rh4CG374100 Rh4DG353700
rosa_wichuraiana Rw4G030700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 363
AccII CGCG 1 cut(s) 377
AccIII TCCGGA 1 cut(s) 406
AclWI GGATC 2 cut(s) 758, 771
AcoI YGGCCR 1 cut(s) 641
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 360, 650
AgsI TTSAA 2 cut(s) 487, 721
AjnI CCWGG 2 cut(s) 45, 464
AluBI AGCT 5 cut(s) 460, 490, 540, 670, 714
AluI AGCT 5 cut(s) 460, 490, 540, 670, 714
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 39, 337
AlwI GGATC 2 cut(s) 758, 771
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 1 cut(s) 641
ApeKI GCWGC 2 cut(s) 119, 584
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 478
AsuC2I CCSGG 3 cut(s) 236, 347, 452
AsuHPI GGTGA 2 cut(s) 69, 743
BaeGI GKGCMC 1 cut(s) 347
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 106, 571
BccI CCATC 3 cut(s) 173, 566, 722
BceAI ACGGC 4 cut(s) 16, 325, 356, 538
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BciT130I CCWGG 2 cut(s) 47, 466
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 3 cut(s) 236, 347, 452
BcoDI GTCTC 2 cut(s) 39, 337
BfaI CTAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 479
BglII AGATCT 1 cut(s) 52
BisI GCNGC 5 cut(s) 29, 120, 201, 354, 585
BlpI GCTNAGC 1 cut(s) 710
BlsI GCNGC 5 cut(s) 30, 121, 202, 355, 586
Bme1390I CCNGG 5 cut(s) 47, 236, 347, 452, 466
BmiI GGNNCC 3 cut(s) 223, 365, 765
BmrFI CCNGG 5 cut(s) 47, 236, 347, 452, 466
BpiI GAAGAC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 3 cut(s) 236, 347, 452
BsaAI YACGTR 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 276, 451, 465
BsaWI WCCGGW 2 cut(s) 406, 441
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 650
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 2 cut(s) 47, 466
BseDI CCNNGG 3 cut(s) 276, 451, 465
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 2 cut(s) 360, 650
BseMII CTCAG 1 cut(s) 701
BseRI GAGGAG 3 cut(s) 143, 160, 317
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 2 cut(s) 106, 571
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 351, 361
BshFI GGCC 1 cut(s) 643
BshNI GGYRCC 1 cut(s) 363
BsiEI CGRYCG 2 cut(s) 351, 361
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 7 cut(s) 236, 252, 347, 407, 442, 451, 644
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 360, 650
BsmAI GTCTC 2 cut(s) 39, 337
BsmBI CGTCTC 2 cut(s) 39, 337
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 347, 528
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 6 cut(s) 52, 358, 394, 399, 672, 763
Bsp1720I GCTNAGC 1 cut(s) 710
Bsp68I TCGCGA 1 cut(s) 377
BspANI GGCC 1 cut(s) 643
BspCNI CTCAG 1 cut(s) 702
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 3 cut(s) 223, 365, 765
BspPI GGATC 2 cut(s) 758, 771
BspT107I GGYRCC 1 cut(s) 363
BssECI CCNNGG 3 cut(s) 276, 451, 465
BssMI GATC 6 cut(s) 52, 358, 394, 399, 672, 763
BssNI GRCGYC 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 47, 466
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 2 cut(s) 597, 710
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 1 cut(s) 377
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 6 cut(s) 55, 361, 397, 402, 675, 766
BstMAI GTCTC 2 cut(s) 39, 337
BstMBI GATC 6 cut(s) 52, 358, 394, 399, 672, 763
BstMCI CGRYCG 2 cut(s) 351, 361
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 2 cut(s) 47, 466
BstSCI CCNGG 5 cut(s) 45, 234, 345, 450, 464
BstSLI GKGCMC 1 cut(s) 347
BstSNI TACGTA 1 cut(s) 742
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 106, 571
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 52, 763
BstYI RGATCY 2 cut(s) 52, 763
BsuRI GGCC 1 cut(s) 643
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 347
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 693
CfoI GCGC 1 cut(s) 478
Csp6I GTAC 1 cut(s) 338
CviJI RGCY 9 cut(s) 460, 490, 540, 596, 643, 670, 709, 714, 725
CviKI_1 RGCY 9 cut(s) 460, 490, 540, 596, 643, 670, 709, 714, 725
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 597, 710
DpnI GATC 6 cut(s) 54, 360, 396, 401, 674, 765
DpnII GATC 6 cut(s) 52, 358, 394, 399, 672, 763
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 2 cut(s) 15, 131
Eco105I TACGTA 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 45, 464
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 2 cut(s) 39, 337
FaqI GGGAC 1 cut(s) 482
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 29, 120, 201, 354, 585
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 5 cut(s) 29, 120, 201, 354, 585
FspBI CTAG 1 cut(s) 681
GlaI GCGC 1 cut(s) 477
GluI GCNGC 5 cut(s) 29, 120, 201, 354, 585
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 1 cut(s) 643
HapII CCGG 7 cut(s) 236, 252, 347, 407, 442, 451, 644
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 500
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 8 cut(s) 22, 39, 85, 322, 382, 421, 428, 773
HpaII CCGG 7 cut(s) 236, 252, 347, 407, 442, 451, 644
HphI GGTGA 2 cut(s) 69, 743
Hpy188I TCNGA 9 cut(s) 57, 221, 394, 399, 420, 438, 505, 611, 778
Hpy188III TCNNGA 6 cut(s) 36, 376, 407, 425, 698, 789
Hpy99I CGWCG 7 cut(s) 164, 221, 311, 377, 502, 505, 559
HpyAV CCTTC 2 cut(s) 143, 256
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 3 cut(s) 9, 500, 741
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 2 cut(s) 597, 710
HpySE526I ACGT 3 cut(s) 9, 500, 741
Hsp92I GRCGYC 1 cut(s) 500
HspAI GCGC 1 cut(s) 476
Kpn2I TCCGGA 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 6 cut(s) 52, 358, 394, 399, 672, 763
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 2 cut(s) 106, 571
MaeI CTAG 1 cut(s) 681
MaeII ACGT 3 cut(s) 9, 500, 741
MaeIII GTNAC 1 cut(s) 75
MalI GATC 6 cut(s) 54, 360, 396, 401, 674, 765
MboI GATC 6 cut(s) 52, 358, 394, 399, 672, 763
MboII GAAGA 6 cut(s) 17, 34, 62, 181, 391, 709
MflI RGATCY 2 cut(s) 52, 763
MhlI GDGCHC 2 cut(s) 347, 528
MluCI AATT 1 cut(s) 387
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 2 cut(s) 199, 483
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 7 cut(s) 236, 252, 347, 407, 442, 451, 644
MspR9I CCNGG 5 cut(s) 47, 236, 347, 452, 466
MvaI CCWGG 2 cut(s) 47, 466
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 3 cut(s) 236, 347, 452
NdeII GATC 6 cut(s) 52, 358, 394, 399, 672, 763
NlaIV GGNNCC 3 cut(s) 223, 365, 765
NmuCI GTSAC 1 cut(s) 75
NruI TCGCGA 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 7 cut(s) 22, 39, 85, 382, 421, 428, 773
PfoI TCCNGGA 2 cut(s) 45, 234
PkrI GCNGC 5 cut(s) 30, 121, 202, 355, 586
Ple19I CGATCG 1 cut(s) 361
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 742
Psp6I CCWGG 2 cut(s) 45, 464
PspGI CCWGG 2 cut(s) 45, 464
PspN4I GGNNCC 3 cut(s) 223, 365, 765
PsuI RGATCY 2 cut(s) 52, 763
PvuI CGATCG 1 cut(s) 361
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 5 cut(s) 29, 120, 201, 354, 585
Sau3AI GATC 6 cut(s) 52, 358, 394, 399, 672, 763
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 5 cut(s) 47, 236, 347, 452, 466
SduI GDGCHC 2 cut(s) 347, 528
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SnaBI TACGTA 1 cut(s) 742
Sse9I AATT 1 cut(s) 387
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 5 cut(s) 45, 234, 345, 450, 464
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 3 cut(s) 12, 503, 744
TaqI TCGA 5 cut(s) 37, 306, 492, 515, 771
TasI AATT 1 cut(s) 387
TauI GCSGC 3 cut(s) 31, 203, 356
TfiI GAWTC 7 cut(s) 22, 39, 85, 382, 421, 428, 773
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 347
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 2 cut(s) 119, 584
Tsp45I GTSAC 1 cut(s) 75
TspGWI ACGGA 4 cut(s) 32, 63, 250, 325
TspRI CASTG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 681
ZraI GACGTC 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.