Rroxscaffold_5G00377890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016649
Physical Location & Seq
Reverse (-)
58445159 .. 58445939
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377890.1

Sequence Viewer

Length: 684 bp
ATGGAAGACGTTTTGACGGAGGTTCCGCCGCCGTCTCGGTTCTTCCAGGAAGATCTGAACAACTTCACGCCTCCGTCACCGCCCATTCCCTCTCCTTTCCTCGTTTTCCCAACCGCCGCCGACCTCGACCTTCCCCTCCGCCCCTCCCTCCTCATCATCGCCATCTCCTCCCCCCTCCCTCCTCCTCTTCCACACCGCCGCCTCCAAAACCCTCATCGGAACCCTAATCCTCCCGGAAACCTCCTTCGCCGGAAACTCGGTCCAGCCCTCTCTCAAGGACAAGTCCTGCAACCTCTACTCCCTCGACGGCAACCGCCAGACCCTCCTCGTCTCGGTCCAAATCGGAACTTCCGGGGCAAGCTTTCCAGGGACGAGGCGCTGGCGTTCAAGCTCGAAACGACGTCGGAGAGGAAATCGAAATCGAAATCTTTGAAATTGGAGTATTTGCCTTCGGCGAGTGTGGTGGATGGGTTGGGTGCTGCTCTGTTGGCCAAGTGTGAAATCAACAAGATCAAGGCGGTGCTCTGTGTCACCTGGCCGGAGTTTGGTGCTGCTGTGCTGGAGCTGATCAAGTTTACGGTTTTGCCTGCTCTGGATTTGGGTCTGAGCTTCAAGTCTGATGCTGATGATTATGGAAGTTTGAGACAAGATAAGGATCCTTTTGATTCTGATTTGTATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC1

Protein Analysis

227

Amino Acids

25.05

Weight (kDa)

8.88

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25545
fragaria_vesca FvH4_4g28700
malus_domestica MD13G1053100.v1.1 MD16G1052100.v1.1
rosa_chinensis RchiOBHm_Chr4g0436821
rosa_laevigata RLG00000006494
rosa_multiflora Rmu_sc0001837.1_g000014
rosa_roxburghii Rroxscaffold_5G00377890
rosa_rugosa Rorug04G0296500
rosa_samantha Rh4AG350800 Rh4BG359800 Rh4CG374100 Rh4DG353700
rosa_wichuraiana Rw4G030700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 404
AclWI GGATC 2 cut(s) 650, 663
AcoI YGGCCR 2 cut(s) 489, 536
AcyI GRCGYC 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 332, 545
AgsI TTSAA 3 cut(s) 388, 433, 613
AjnI CCWGG 3 cut(s) 45, 365, 533
AluBI AGCT 4 cut(s) 361, 391, 565, 609
AluI AGCT 4 cut(s) 361, 391, 565, 609
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 3 cut(s) 39, 335, 637
AlwI GGATC 2 cut(s) 650, 663
AoxI GGCC 2 cut(s) 489, 536
ApeKI GCWGC 2 cut(s) 479, 551
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 260, 335
AsuC2I CCSGG 2 cut(s) 234, 353
AsuHPI GGTGA 2 cut(s) 69, 523
AvaII GGWCC 2 cut(s) 260, 335
BalI TGGCCA 1 cut(s) 491
BamHI GGATCC 1 cut(s) 655
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 466, 538
BccI CCATC 2 cut(s) 170, 461
BceAI ACGGC 2 cut(s) 16, 323
BciT130I CCWGG 3 cut(s) 47, 367, 535
BclI TGATCA 1 cut(s) 567
BcnI CCSGG 2 cut(s) 234, 353
BcoDI GTCTC 3 cut(s) 39, 335, 637
BfoI RGCGCY 1 cut(s) 380
BglII AGATCT 1 cut(s) 52
BisI GCNGC 5 cut(s) 29, 117, 199, 480, 552
BlsI GCNGC 5 cut(s) 30, 118, 200, 481, 553
Bme1390I CCNGG 5 cut(s) 47, 234, 353, 367, 535
Bme18I GGWCC 2 cut(s) 260, 335
BmgT120I GGNCC 2 cut(s) 260, 335
BmiI GGNNCC 3 cut(s) 24, 221, 657
BmrFI CCNGG 5 cut(s) 47, 234, 353, 367, 535
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 2 cut(s) 234, 353
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 352, 366
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 545
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 3 cut(s) 47, 367, 535
BseDI CCNNGG 2 cut(s) 352, 366
BseGI GGATG 1 cut(s) 472
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 332, 545
BseMII CTCAG 1 cut(s) 596
BseRI GAGGAG 5 cut(s) 140, 157, 171, 174, 315
BseXI GCAGC 2 cut(s) 466, 538
BshFI GGCC 2 cut(s) 491, 538
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 4 cut(s) 234, 250, 352, 539
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 332, 545
BsmAI GTCTC 3 cut(s) 39, 335, 637
BsmBI CGTCTC 2 cut(s) 39, 335
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 2 cut(s) 491, 538
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 4 cut(s) 52, 510, 567, 655
BspANI GGCC 2 cut(s) 491, 538
BspCNI CTCAG 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 24, 221, 657
BspPI GGATC 2 cut(s) 650, 663
BssECI CCNNGG 2 cut(s) 352, 366
BssMI GATC 4 cut(s) 52, 510, 567, 655
BssNI GRCGYC 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 47, 367, 535
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 359, 381, 588
BstDEI CTNAG 1 cut(s) 605
BstF5I GGATG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 55, 513, 570, 658
BstMAI GTCTC 3 cut(s) 39, 335, 637
BstMBI GATC 4 cut(s) 52, 510, 567, 655
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 3 cut(s) 47, 367, 535
BstSCI CCNGG 5 cut(s) 45, 232, 351, 365, 533
BstV1I GCAGC 2 cut(s) 466, 538
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 52, 655
BstYI RGATCY 2 cut(s) 52, 655
BsuRI GGCC 2 cut(s) 491, 538
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 472
Cac8I GCNNGC 3 cut(s) 359, 381, 588
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 260, 335
CviJI RGCY 7 cut(s) 266, 361, 391, 491, 538, 565, 609
CviKI_1 RGCY 7 cut(s) 266, 361, 391, 491, 538, 565, 609
DdeI CTNAG 1 cut(s) 605
DpnI GATC 4 cut(s) 54, 512, 569, 657
DpnII GATC 4 cut(s) 52, 510, 567, 655
EaeI YGGCCR 2 cut(s) 489, 536
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 2 cut(s) 15, 128
Eco47I GGWCC 2 cut(s) 260, 335
EcoRII CCWGG 3 cut(s) 45, 365, 533
Esp3I CGTCTC 2 cut(s) 39, 335
FaiI YATR 1 cut(s) 633
FaqI GGGAC 1 cut(s) 383
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 5 cut(s) 29, 117, 199, 480, 552
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 5 cut(s) 29, 117, 199, 480, 552
GlaI GCGC 1 cut(s) 378
GluI GCNGC 5 cut(s) 29, 117, 199, 480, 552
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 491, 538
HapII CCGG 4 cut(s) 234, 250, 352, 539
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 401
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 1 cut(s) 665
HpaII CCGG 4 cut(s) 234, 250, 352, 539
HphI GGTGA 2 cut(s) 69, 523
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 7 cut(s) 57, 219, 345, 406, 606, 619, 670
Hpy188III TCNNGA 2 cut(s) 593, 681
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 3 cut(s) 309, 403, 406
HpyAV CCTTC 3 cut(s) 140, 254, 459
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 9, 401
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 1 cut(s) 605
HpySE526I ACGT 2 cut(s) 9, 401
Hsp92I GRCGYC 1 cut(s) 401
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 4 cut(s) 52, 510, 567, 655
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 2 cut(s) 466, 538
LweI GCATC 1 cut(s) 610
MaeII ACGT 2 cut(s) 9, 401
MaeIII GTNAC 2 cut(s) 75, 529
MalI GATC 4 cut(s) 54, 512, 569, 657
MboI GATC 4 cut(s) 52, 510, 567, 655
MboII GAAGA 4 cut(s) 17, 34, 62, 179
MflI RGATCY 2 cut(s) 52, 655
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 1 cut(s) 434
MluNI TGGCCA 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 384
Mox20I TGGCCA 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 491
MspI CCGG 4 cut(s) 234, 250, 352, 539
MspR9I CCNGG 5 cut(s) 47, 234, 353, 367, 535
MvaI CCWGG 3 cut(s) 47, 367, 535
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 2 cut(s) 234, 353
NdeII GATC 4 cut(s) 52, 510, 567, 655
NlaIV GGNNCC 3 cut(s) 24, 221, 657
NmuCI GTSAC 2 cut(s) 75, 529
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 665
PfoI TCCNGGA 2 cut(s) 45, 232
PkrI GCNGC 5 cut(s) 30, 118, 200, 481, 553
Psp6I CCWGG 3 cut(s) 45, 365, 533
PspGI CCWGG 3 cut(s) 45, 365, 533
PspN4I GGNNCC 3 cut(s) 24, 221, 657
PspPI GGNCC 2 cut(s) 260, 335
PsuI RGATCY 2 cut(s) 52, 655
SatI GCNGC 5 cut(s) 29, 117, 199, 480, 552
Sau3AI GATC 4 cut(s) 52, 510, 567, 655
Sau96I GGNCC 2 cut(s) 260, 335
ScrFI CCNGG 5 cut(s) 47, 234, 353, 367, 535
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 1 cut(s) 610
SinI GGWCC 2 cut(s) 260, 335
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 1 cut(s) 434
StyD4I CCNGG 5 cut(s) 45, 232, 351, 365, 533
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 12, 404
TaqI TCGA 5 cut(s) 126, 304, 393, 416, 422
TaqII GACCGA 2 cut(s) 248, 323
TasI AATT 1 cut(s) 434
TauI GCSGC 3 cut(s) 31, 119, 201
TfiI GAWTC 1 cut(s) 665
TseFI GTSAC 2 cut(s) 75, 529
TseI GCWGC 2 cut(s) 479, 551
Tsp45I GTSAC 2 cut(s) 75, 529
TspGWI ACGGA 2 cut(s) 32, 63
VpaK11BI GGWCC 2 cut(s) 260, 335
XmnI GAANNNNTTC 1 cut(s) 62
ZraI GACGTC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.