Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008011

Physical Location & Seq

Genomic Coordinates Forward (+)

30916013 .. 30921027

Gene Structure 5015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32120.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTCTTCTGGGGCCCTCCGTCTAAATTTGTATCTGCTGGATGGGAGCCTAAACAAGAGAACAGTGATATACAAGTCATTGAAAATGGGCGTACAGCTGACCGGCTACTGGGTTGGATCAACAAGCAAATTGGCAGCTCATTTGGATTGGATGATCAGAAATTTGAAAATGACCATCTTCCATCAAATGCATCAGACCCTGGACAGATTGCTCGGGCTGTCTATGATGTCGAGGAGGCCACATCCACAGCTTTTGAAATTATCTTAGAGCATAAGATGATCAAGCCAGAAACAAGGGGCTCACTAGTTAAATTTCTTCAACTTATGGTGGCTCACCATCCTTCAAGGAGGTGCCGGAAGGGAAGTGCAGAGGTACTTGTGAGGTTTGATGATGTGTATCCTCTAGATGCATGGTCAGCTAACGGACATGAAGGCCAAGATGGAAAGGGTGCCCTGGGAAATATCCAGATTTGTGGTAAAGATGTTCCTCGTGGATATTGGATGTTCTGTCGTGGTAGTAAGAATGATACCAGGGGATTTAGCTGCGGATTATGGGTTCTTCTTCATTCACTGTCGGTACGAATTGAGGATGGAGAGAGCTCTTTTGCATTTTCCACCATTTGCGACTTTGTACACAACTTTTTTATCTGTGAGGAGTGTCGCCAACATTTTTATAAAATGTGTTCAAGGGTTTCTAGTCCTATCAACAAATCTCGTGACTTTGCCCTTTGGCTGTGGAGTGCACACAATAAAGTCAATGATAGACTAATTAAAGAGGAAGCCTCTTTAGGAACTGGTGATCCCAAATTCCCGAAGACGATTTGGCCTCCAAAGCAACTTTGCTCATCTTGTTACCGCTCCCAGAAGAACAACGACATTGATTGGGACGAGGATGCTGTGTTCAACTTTTTGACCAATTATTATGGGAAGACGCTTGTTTCTCTAAACAAAGACAAGGGTCTTAATGGGAGAGATGGGACTACTGCGGCACTTGAAGATTTGGTTCCTTCAACAAATGCGATTGTGGTGCCTCTGGGGGCTGCATTAGCCATTGCTGTTGCTAGTTGTGCATTTGGGGCACTCGCATGCTACTGGCGTTCACAGCAGAAGAGTCGGAAGTATTACCACCAACTACACTCTTTAAAGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

385

Amino Acids

43.16

Weight (kDa)

7.55

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST3_OST6	PF04756	42 - 174	1.3e-06	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	45 - 134	3.7e-12	Thioredoxin
Evr1_Alr	PF04777	307 - 397	1e-19	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15020 AT1G15020 AT1G15020 AT2G01270 AT2G01270 AT2G01270
fragaria_vesca	FvH4_4g32120 FvH4_4g32120 FvH4_4g32120
malus_domestica	MD13G1028500.v1.1
prunus_persica	Prupe.1G321800_v2.0.a1 Prupe.1G321800_v2.0.a1
pyrus_communis	pycom13g02680
rosa_chinensis	RchiOBHm_Chr4g0440821
rosa_laevigata	RLG00000006146
rosa_multiflora	Rmu_sc0005054.1_g000015
rosa_roxburghii	Rroxscaffold_5G00381650
rosa_rugosa	Rorug04G0328200 Rorug04G0328300
rosa_samantha	Rh4AG380300 Rh4BG393000 Rh4CG407800 Rh4DG386900
rosa_wichuraiana	Rw4G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AccB1I	GGYRCC	3 cut(s)	351, 449, 1027
AccBSI	CCGCTC	1 cut(s)	858
AciI	CCGC	3 cut(s)	546, 856, 986
AclWI	GGATC	2 cut(s)	125, 794
AcsI	RAATTY	4 cut(s)	26, 161, 311, 806
AfaI	GTAC	4 cut(s)	94, 375, 579, 633
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	9 cut(s)	83, 167, 257, 320, 345, 687, 904, 995, 1011
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	199, 453, 530
AloI	GAACNNNNNNTCC	6 cut(s)	540, 572, 784, 816, 884, 916
AluBI	AGCT	6 cut(s)	98, 138, 251, 419, 543, 600
AluI	AGCT	6 cut(s)	98, 138, 251, 419, 543, 600
Alw21I	GWGCWC	2 cut(s)	602, 745
Alw44I	GTGCAC	1 cut(s)	741
AlwI	GGATC	2 cut(s)	125, 794
AlwNI	CAGNNNCTG	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	4 cut(s)	13, 237, 433, 824
ApaI	GGGCCC	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	741
ApeKI	GCWGC	3 cut(s)	135, 543, 1040
ApoI	RAATTY	4 cut(s)	26, 161, 311, 806
AspS9I	GGNCC	2 cut(s)	13, 14
AsuHPI	GGTGA	2 cut(s)	326, 809
AvaI	CYCGRG	1 cut(s)	213
BaeGI	GKGCMC	4 cut(s)	17, 454, 745, 1081
BanI	GGYRCC	3 cut(s)	351, 449, 1027
BanII	GRGCYC	3 cut(s)	17, 302, 602
BauI	CACGAG	2 cut(s)	489, 714
BbsI	GAAGAC	2 cut(s)	821, 935
Bbv12I	GWGCWC	2 cut(s)	602, 745
BbvI	GCAGC	3 cut(s)	147, 530, 1027
BccI	CCATC	7 cut(s)	36, 183, 190, 345, 434, 584, 968
BcgI	CGANNNNNNTGC	4 cut(s)	1009, 1043, 1094, 1128
BciT130I	CCWGG	3 cut(s)	201, 455, 532
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	2 cut(s)	154, 279
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	4 cut(s)	305, 404, 696, 1062
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	4 cut(s)	136, 544, 987, 1041
BlsI	GCNGC	4 cut(s)	137, 545, 988, 1042
Bme1390I	CCNGG	3 cut(s)	201, 455, 532
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	13, 14
BmiI	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 1005, 1029
BmrFI	CCNGG	3 cut(s)	201, 455, 532
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	3 cut(s)	200, 397, 883
BmuI	ACTGGG	1 cut(s)	119
BoxI	GACNNNNGTC	1 cut(s)	957
BpiI	GAAGAC	2 cut(s)	821, 935
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	199, 453, 454, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	3 cut(s)	114, 799, 1097
Bse3DI	GCAATG	1 cut(s)	1050
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	201, 455, 532
BseDI	CCNNGG	4 cut(s)	199, 453, 454, 531
BseGI	GGATG	7 cut(s)	47, 157, 242, 337, 507, 595, 898
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	1050
BseNI	ACTGG	3 cut(s)	114, 799, 1097
BseRI	GAGGAG	2 cut(s)	248, 668
BseSI	GKGCMC	4 cut(s)	17, 454, 745, 1081
BseXI	GCAGC	3 cut(s)	147, 530, 1027
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	15, 239, 435, 826
BshNI	GGYRCC	3 cut(s)	351, 449, 1027
BsiHKAI	GWGCWC	2 cut(s)	602, 745
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	103, 355
BslFI	GGGAC	2 cut(s)	899, 991
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	899, 991
BsnI	GGCC	4 cut(s)	15, 239, 435, 826
BsoBI	CYCGRG	1 cut(s)	213
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	6 cut(s)	17, 302, 454, 602, 745, 1081
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	4 cut(s)	117, 154, 279, 799
BspACI	CCGC	3 cut(s)	546, 856, 986
BspANI	GGCC	4 cut(s)	15, 239, 435, 826
BspLI	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 1005, 1029
BspPI	GGATC	2 cut(s)	125, 794
BspQI	GCTCTTC	1 cut(s)	11
BspT107I	GGYRCC	3 cut(s)	351, 449, 1027
BsrBI	CCGCTC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	1050
BsrFI	RCCGGY	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	114, 799, 1097
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	199, 453, 454, 531
BssMI	GATC	4 cut(s)	117, 154, 279, 799
BssSI	CACGAG	2 cut(s)	489, 714
Bst2BI	CACGAG	2 cut(s)	489, 714
Bst2UI	CCWGG	3 cut(s)	201, 455, 532
Bst4CI	ACNGT	2 cut(s)	65, 573
Bst6I	CTCTTC	2 cut(s)	11, 1103
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	1087
BstDEI	CTNAG	1 cut(s)	265
BstF5I	GGATG	7 cut(s)	47, 157, 242, 337, 507, 595, 898
BstKTI	GATC	4 cut(s)	120, 157, 282, 802
BstMBI	GATC	4 cut(s)	117, 154, 279, 799
BstMWI	GCNNNNNNNGC	6 cut(s)	416, 832, 1046, 1067, 1076, 1102
BstNI	CCWGG	3 cut(s)	201, 455, 532
BstNSI	RCATGY	1 cut(s)	1089
BstPAI	GACNNNNGTC	1 cut(s)	957
BstSCI	CCNGG	3 cut(s)	199, 453, 530
BstSLI	GKGCMC	4 cut(s)	17, 454, 745, 1081
BstV1I	GCAGC	3 cut(s)	147, 530, 1027
BstV2I	GAAGAC	2 cut(s)	821, 935
BstXI	CCANNNNNNTGG	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	15, 239, 435, 826
BtsCI	GGATG	7 cut(s)	47, 157, 242, 337, 507, 595, 898
BtsIMutI	CAGTG	2 cut(s)	70, 569
Cac8I	GCNNGC	1 cut(s)	1087
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	13, 14
CseI	GACGC	1 cut(s)	940
Csp6I	GTAC	4 cut(s)	93, 374, 578, 632
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	3 cut(s)	411, 428, 1086
CviQI	GTAC	4 cut(s)	93, 374, 578, 632
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	4 cut(s)	119, 156, 281, 801
DpnII	GATC	4 cut(s)	117, 154, 279, 799
DraI	TTTAAA	1 cut(s)	1143
Eam1104I	CTCTTC	2 cut(s)	11, 1103
EarI	CTCTTC	2 cut(s)	11, 1103
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	3 cut(s)	17, 302, 602
Eco53kI	GAGCTC	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	600
EcoO109I	RGGNCCY	2 cut(s)	13, 14
EcoRII	CCWGG	3 cut(s)	199, 453, 530
EcoT22I	ATGCAT	2 cut(s)	193, 412
EcoT38I	GRGCYC	3 cut(s)	17, 302, 602
FaeI	CATG	3 cut(s)	414, 431, 1089
FaqI	GGGAC	2 cut(s)	899, 991
FatI	CATG	3 cut(s)	410, 427, 1085
FbaI	TGATCA	2 cut(s)	154, 279
Fnu4HI	GCNGC	4 cut(s)	136, 544, 987, 1041
FokI	GGATG	7 cut(s)	54, 164, 229, 324, 514, 602, 905
FriOI	GRGCYC	3 cut(s)	17, 302, 602
Fsp4HI	GCNGC	4 cut(s)	136, 544, 987, 1041
FspBI	CTAG	4 cut(s)	305, 404, 696, 1062
GluI	GCNGC	4 cut(s)	136, 544, 987, 1041
HaeIII	GGCC	4 cut(s)	15, 239, 435, 826
HapII	CCGG	2 cut(s)	103, 355
HgaI	GACGC	1 cut(s)	940
Hin1II	CATG	3 cut(s)	414, 431, 1089
HinfI	GANTC	1 cut(s)	1111
HpaII	CCGG	2 cut(s)	103, 355
HphI	GGTGA	2 cut(s)	326, 809
Hpy166II	GTNNAC	3 cut(s)	634, 743, 1100
Hpy188I	TCNGA	3 cut(s)	159, 196, 1116
Hpy188III	TCNNGA	4 cut(s)	404, 466, 716, 811
Hpy8I	GTNNAC	3 cut(s)	634, 743, 1100
HpyAV	CCTTC	4 cut(s)	351, 352, 425, 1017
HpyCH4III	ACNGT	2 cut(s)	65, 573
HpyCH4V	TGCA	7 cut(s)	191, 368, 410, 608, 743, 1043, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	416, 832, 1046, 1067, 1076, 1102
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	414, 431, 1089
Ksp22I	TGATCA	2 cut(s)	154, 279
Kzo9I	GATC	4 cut(s)	117, 154, 279, 799
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	46, 863
Lsp1109I	GCAGC	3 cut(s)	147, 530, 1027
LweI	GCATC	3 cut(s)	200, 397, 883
MaeI	CTAG	4 cut(s)	305, 404, 696, 1062
MaeIII	GTNAC	2 cut(s)	716, 851
MalI	GATC	4 cut(s)	119, 156, 281, 801
MbiI	CCGCTC	1 cut(s)	858
MboI	GATC	4 cut(s)	117, 154, 279, 799
MboII	GAAGA	9 cut(s)	170, 308, 551, 554, 826, 877, 940, 1007, 1120
MhlI	GDGCHC	6 cut(s)	17, 302, 454, 602, 745, 1081
MluCI	AATT	9 cut(s)	26, 129, 161, 258, 311, 582, 768, 806, 916
MlyI	GAGTC	1 cut(s)	1120
MmeI	TCCRAC	2 cut(s)	95, 1094
Mph1103I	ATGCAT	2 cut(s)	193, 412
MseI	TTAA	4 cut(s)	309, 771, 963, 1142
MslI	CAYNNNNRTG	1 cut(s)	1084
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	103, 355
MspR9I	CCNGG	3 cut(s)	201, 455, 532
MvaI	CCWGG	3 cut(s)	201, 455, 532
MwoI	GCNNNNNNNGC	6 cut(s)	416, 832, 1046, 1067, 1076, 1102
NdeII	GATC	4 cut(s)	117, 154, 279, 799
NlaIII	CATG	3 cut(s)	414, 431, 1089
NlaIV	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 1005, 1029
NmuCI	GTSAC	1 cut(s)	716
NsiI	ATGCAT	2 cut(s)	193, 412
NspI	RCATGY	1 cut(s)	1089
PaeI	GCATGC	1 cut(s)	1089
PasI	CCCWGGG	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	137, 545, 988, 1042
PleI	GAGTC	1 cut(s)	1119
PpsI	GAGTC	1 cut(s)	1119
PshAI	GACNNNNGTC	1 cut(s)	957
PsiI	TTATAA	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	3 cut(s)	199, 453, 530
PspGI	CCWGG	3 cut(s)	199, 453, 530
PspN4I	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 1005, 1029
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	13, 14
PstNI	CAGNNNCTG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	4 cut(s)	94, 375, 579, 633
RsaNI	GTAC	4 cut(s)	93, 374, 578, 632
RseI	CAYNNNNRTG	1 cut(s)	1084
SacI	GAGCTC	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	4 cut(s)	309, 771, 963, 1142
SatI	GCNGC	4 cut(s)	136, 544, 987, 1041
Sau3AI	GATC	4 cut(s)	117, 154, 279, 799
Sau96I	GGNCC	2 cut(s)	13, 14
SchI	GAGTC	1 cut(s)	1120
ScrFI	CCNGG	3 cut(s)	201, 455, 532
SduI	GDGCHC	6 cut(s)	17, 302, 454, 602, 745, 1081
SetI	ASST	9 cut(s)	100, 140, 253, 353, 375, 386, 421, 545, 602
SfaNI	GCATC	3 cut(s)	200, 397, 883
SmiMI	CAYNNNNRTG	1 cut(s)	1084
SpeI	ACTAGT	1 cut(s)	304
SphI	GCATGC	1 cut(s)	1089
Sse9I	AATT	9 cut(s)	26, 129, 161, 258, 311, 582, 768, 806, 916
SsiI	CCGC	3 cut(s)	546, 856, 986
SspMI	CTAG	4 cut(s)	305, 404, 696, 1062
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	199, 453, 530
TaaI	ACNGT	2 cut(s)	65, 573
TaqI	TCGA	1 cut(s)	231
TasI	AATT	9 cut(s)	26, 129, 161, 258, 311, 582, 768, 806, 916
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	1 cut(s)	989
Tru1I	TTAA	4 cut(s)	309, 771, 963, 1142
Tru9I	TTAA	4 cut(s)	309, 771, 963, 1142
TscAI	CASTG	2 cut(s)	70, 576
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	135, 543, 1040
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	2 cut(s)	444, 554
TspGWI	ACGGA	2 cut(s)	9, 438
TspRI	CASTG	2 cut(s)	70, 576
VneI	GTGCAC	1 cut(s)	741
XapI	RAATTY	4 cut(s)	26, 161, 311, 806
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	1089
XspI	CTAG	4 cut(s)	305, 404, 696, 1062
Zsp2I	ATGCAT	2 cut(s)	193, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.