Rorug04G0328300

Sulfhydryl oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008011
Physical Location & Seq
Forward (+)
50304275 .. 50307866
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0328300.1

Sequence Viewer

Length: 1206 bp
ATGTTCGGAGCTCAATCGTCGTCTTCTCCCTTCGGAGCCCAGACGTCCTCTTCTCCCTTCGGAGCCTTCGGCACTCCGTCTTCAACCTTCGGCACTCCGGCTTCGACCTCCGCCTTCGGGACTCCAGCCTTCGGCACTCCCTCGACGACCCCGTCCTTCTTCACTCCTAGTTCCACCCCCGCCTTCGGAACTCCCACCACGTCGTCGTTTTCCACCGGCGGCTTCGGGGCCTCCTTGTTCTCCAGCGCCTTCTCTACTCAGACTCAGCAGCAACAGCAAACGCCGTCGTTTCAGCAACAAGCTCCCTCCACCGGTGGATTTGGGACTCAGAATCCGTTCGGTACGCCACAGCAGCAGCAGACGCCGTCGTTTCAGAGTCCCTCCTTTCCTACTCAATTGACCACTCAGATGGCTCCCGTGGCTCCTCTCCCTTACTCTCTCGCCGATCGTGACATTCAGGCAATTGTTGACGCTTATAAGAATGAGCCTGGTAACCCTAAATATGCTTTTAAGCATCTGTTGTTTAGTGTAACTGATCCGCAGTTTAGGGTGAAGCCTGCTGGTGTATCGGATATAATGTGGGCAGAGGCTATGGGGAAGCTTGAAGGTCTATCAAGTACTGACAGGGAACGGCTGTGGCCTGAGCTTGTTCAGGGTTTTAAGGATCTTTCACAACGCCTGAAGCTCCAAGATGAAGTCATACTTTCGGATGCTGAGAGACTGCAAATGACCCAAAGCAACGTGAAGATGCTTCAAAGACATTTTCAAGCTGACACTATTCCTCGGATTGAAAGAATGAGACAGAAGGAGCAAGGTCTTGAAAGGCGCCTGTTGAGGGTAATGAGAATACTGGAGGCACTAGAGGGCAAAGGTTTCCGATTGCCTTTAATGAAAGGGGAAGCTGAGTTGGCTGAGAAGTTAGCTTCAATAACTAGACAGTTGAAAGGACCTGGAGCTGAGCTTTCTAGCAGGGTACAAAACCTGCGAACTATATCCCGAGTCCAGGCAAATTCTATTGGTGCTGGTGGTTTTGTTTCTCTTCCAGGATCAACCAAAATACATGAACAGAGTCTTGCTGATATGCAAGAGGTCTTACAACAACAGACTGAGGCTATTGCAAGACTTGGCAATGTTTTGAAGCGTGATATTAGGGATATGGAGATTATAATGGCTGAGGAGCCAGACACTACAGATAATATGTGTTAG

Protein Analysis

401

Amino Acids

43.69

Weight (kDa)

6.87

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup54 PF13874 185 - 329 2.7e-32 Nucleoporin complex subunit 54
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 477, 1166
AasI GACNNNNNNGTC 1 cut(s) 151
AatII GACGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 990
AccB1I GGYRCC 1 cut(s) 825
AciI CCGC 4 cut(s) 111, 180, 219, 539
AclWI GGATC 3 cut(s) 530, 672, 1054
AcsI RAATTY 1 cut(s) 1009
AcuI CTGAAG 1 cut(s) 701
AcyI GRCGYC 3 cut(s) 44, 362, 826
AfaI GTAC 3 cut(s) 343, 619, 975
AfiI CCNNNNNNNGG 6 cut(s) 117, 131, 185, 311, 835, 1003
AgeI ACCGGT 1 cut(s) 311
AgsI TTSAA 9 cut(s) 84, 605, 755, 767, 791, 821, 927, 943, 1138
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 4 cut(s) 487, 949, 1002, 1042
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 712, 793
AlwI GGATC 3 cut(s) 530, 672, 1054
Ama87I CYCGRG 1 cut(s) 996
AoxI GGCC 2 cut(s) 228, 638
ApeKI GCWGC 3 cut(s) 268, 352, 355
ApoI RAATTY 1 cut(s) 1009
AsiGI ACCGGT 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 2 cut(s) 248, 828
AspS9I GGNCC 2 cut(s) 228, 947
AsuHPI GGTGA 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 996
AvaII GGWCC 1 cut(s) 947
BanI GGYRCC 1 cut(s) 825
BanII GRGCYC 2 cut(s) 13, 40
BbsI GAAGAC 2 cut(s) 15, 72
Bbv12I GWGCWC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 1173
BbvI GCAGC 3 cut(s) 280, 364, 367
BccI CCATC 1 cut(s) 403
BceAI ACGGC 3 cut(s) 268, 349, 647
BciT130I CCWGG 4 cut(s) 489, 951, 1004, 1044
BcoDI GTCTC 2 cut(s) 712, 793
BfaI CTAG 4 cut(s) 168, 860, 933, 966
BfmI CTRYAG 1 cut(s) 1188
BfoI RGCGCY 2 cut(s) 249, 829
BfuAI ACCTGC 1 cut(s) 990
BisI GCNGC 4 cut(s) 220, 269, 353, 356
BlpI GCTNAGC 1 cut(s) 957
BlsI GCNGC 4 cut(s) 221, 270, 354, 357
BmcAI AGTACT 1 cut(s) 619
Bme1390I CCNGG 4 cut(s) 489, 951, 1004, 1044
Bme18I GGWCC 1 cut(s) 947
BmeT110I CYCGRG 1 cut(s) 996
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 228, 947
BmiI GGNNCC 7 cut(s) 37, 64, 229, 414, 423, 827, 1179
BmrFI CCNGG 4 cut(s) 489, 951, 1004, 1044
BmsI GCATC 3 cut(s) 523, 700, 738
BpiI GAAGAC 2 cut(s) 15, 72
BpmI CTGGAG 4 cut(s) 108, 226, 872, 972
Bpu10I CCTNAGC 2 cut(s) 642, 1173
Bpu1102I GCTNAGC 1 cut(s) 957
BsaHI GRCGYC 3 cut(s) 44, 362, 826
BsaJI CCNNGG 2 cut(s) 417, 782
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 131, 185, 311, 835, 1003
Bse118I RCCGGY 2 cut(s) 215, 311
Bse1I ACTGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 1135
BseBI CCWGG 4 cut(s) 489, 951, 1004, 1044
BseDI CCNNGG 2 cut(s) 417, 782
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 6 cut(s) 117, 131, 185, 311, 835, 1003
BseMI GCAATG 1 cut(s) 1135
BseNI ACTGG 1 cut(s) 855
BseRI GAGGAG 2 cut(s) 414, 1190
BseXI GCAGC 3 cut(s) 280, 364, 367
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 230, 640
BshNI GGYRCC 1 cut(s) 825
BshTI ACCGGT 1 cut(s) 311
BsiEI CGRYCG 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 3 cut(s) 98, 216, 312
BslFI GGGAC 3 cut(s) 133, 337, 363
BslI CCNNNNNNNGG 6 cut(s) 117, 131, 185, 311, 835, 1003
BsmAI GTCTC 2 cut(s) 712, 793
BsmFI GGGAC 3 cut(s) 133, 337, 363
BsnI GGCC 2 cut(s) 230, 640
BsoBI CYCGRG 1 cut(s) 996
Bsp1286I GDGCHC 2 cut(s) 13, 40
Bsp143I GATC 4 cut(s) 445, 535, 664, 1046
Bsp1720I GCTNAGC 1 cut(s) 957
BspACI CCGC 4 cut(s) 111, 180, 219, 539
BspANI GGCC 2 cut(s) 230, 640
BspLI GGNNCC 7 cut(s) 37, 64, 229, 414, 423, 827, 1179
BspMI ACCTGC 1 cut(s) 990
BspPI GGATC 3 cut(s) 530, 672, 1054
BspT107I GGYRCC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 1135
BsrFI RCCGGY 2 cut(s) 215, 311
BsrI ACTGG 1 cut(s) 855
BssAI RCCGGY 2 cut(s) 215, 311
BssECI CCNNGG 2 cut(s) 417, 782
BssMI GATC 4 cut(s) 445, 535, 664, 1046
BssNI GRCGYC 3 cut(s) 44, 362, 826
Bst2UI CCWGG 4 cut(s) 489, 951, 1004, 1044
Bst4CI ACNGT 1 cut(s) 939
Bst6I CTCTTC 2 cut(s) 55, 1044
BstACI GRCGYC 3 cut(s) 44, 362, 826
BstC8I GCNNGC 1 cut(s) 558
BstDSI CCRYGG 1 cut(s) 417
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 1 cut(s) 715
BstH2I RGCGCY 2 cut(s) 249, 829
BstHHI GCGC 2 cut(s) 248, 828
BstKTI GATC 4 cut(s) 448, 538, 667, 1049
BstMAI GTCTC 2 cut(s) 712, 793
BstMBI GATC 4 cut(s) 445, 535, 664, 1046
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 5 cut(s) 274, 352, 361, 419, 908
BstNI CCWGG 4 cut(s) 489, 951, 1004, 1044
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 4 cut(s) 487, 949, 1002, 1042
BstSFI CTRYAG 1 cut(s) 1188
BstV1I GCAGC 3 cut(s) 280, 364, 367
BstV2I GAAGAC 2 cut(s) 15, 72
BstX2I RGATCY 1 cut(s) 664
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 2 cut(s) 230, 640
BtgI CCRYGG 1 cut(s) 417
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 990
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 2 cut(s) 248, 828
Cfr10I RCCGGY 2 cut(s) 215, 311
Cfr13I GGNCC 2 cut(s) 228, 947
CseI GACGC 2 cut(s) 370, 479
Csp6I GTAC 3 cut(s) 342, 618, 974
CspAI ACCGGT 1 cut(s) 311
CviAII CATG 1 cut(s) 1061
CviQI GTAC 3 cut(s) 342, 618, 974
DinI GGCGCC 1 cut(s) 827
DpnI GATC 4 cut(s) 447, 537, 666, 1048
DpnII GATC 4 cut(s) 445, 535, 664, 1046
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 55, 1044
EarI CTCTTC 2 cut(s) 55, 1044
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 2 cut(s) 13, 40
Eco47I GGWCC 1 cut(s) 947
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 996
Eco91I GGTNACC 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 2 cut(s) 228, 947
EcoO65I GGTNACC 1 cut(s) 491
EcoRII CCWGG 4 cut(s) 487, 949, 1002, 1042
EcoT38I GRGCYC 2 cut(s) 13, 40
EgeI GGCGCC 1 cut(s) 827
EheI GGCGCC 1 cut(s) 827
FaeI CATG 1 cut(s) 1064
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 3 cut(s) 133, 337, 363
FatI CATG 1 cut(s) 1060
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 220, 269, 353, 356
FokI GGATG 1 cut(s) 722
FriOI GRGCYC 2 cut(s) 13, 40
Fsp4HI GCNGC 4 cut(s) 220, 269, 353, 356
FspBI CTAG 4 cut(s) 168, 860, 933, 966
GlaI GCGC 2 cut(s) 247, 827
GluI GCNGC 4 cut(s) 220, 269, 353, 356
GsuI CTGGAG 4 cut(s) 108, 226, 872, 972
HaeII RGCGCY 2 cut(s) 249, 829
HaeIII GGCC 2 cut(s) 230, 640
HapII CCGG 3 cut(s) 98, 216, 312
HgaI GACGC 2 cut(s) 370, 479
HhaI GCGC 2 cut(s) 248, 828
Hin1I GRCGYC 3 cut(s) 44, 362, 826
Hin1II CATG 1 cut(s) 1064
Hin6I GCGC 2 cut(s) 246, 826
HinP1I GCGC 2 cut(s) 246, 826
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 7 cut(s) 121, 262, 325, 331, 376, 999, 1069
HpaII CCGG 3 cut(s) 98, 216, 312
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 469
Hpy188III TCNNGA 4 cut(s) 118, 449, 818, 996
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 6 cut(s) 22, 148, 205, 208, 289, 370
HpyCH4III ACNGT 1 cut(s) 939
HpyCH4IV ACGT 3 cut(s) 44, 200, 741
HpyCH4V TGCA 3 cut(s) 724, 1084, 1118
HpyF10VI GCNNNNNNNGC 5 cut(s) 274, 352, 361, 419, 908
HpySE526I ACGT 3 cut(s) 44, 200, 741
Hsp92I GRCGYC 3 cut(s) 44, 362, 826
Hsp92II CATG 1 cut(s) 1064
HspAI GCGC 2 cut(s) 246, 826
KasI GGCGCC 1 cut(s) 825
Kzo9I GATC 4 cut(s) 445, 535, 664, 1046
Lsp1109I GCAGC 3 cut(s) 280, 364, 367
LweI GCATC 3 cut(s) 523, 700, 738
MaeI CTAG 4 cut(s) 168, 860, 933, 966
MaeII ACGT 3 cut(s) 44, 200, 741
MaeIII GTNAC 3 cut(s) 449, 491, 529
MalI GATC 4 cut(s) 447, 537, 666, 1048
MboI GATC 4 cut(s) 445, 535, 664, 1046
MboII GAAGA 6 cut(s) 15, 42, 72, 151, 757, 1031
MfeI CAATTG 2 cut(s) 395, 462
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 2 cut(s) 13, 40
MluCI AATT 3 cut(s) 395, 462, 1009
Mly113I GGCGCC 1 cut(s) 826
MlyI GAGTC 6 cut(s) 115, 256, 319, 385, 1008, 1078
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 3 cut(s) 510, 660, 887
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 3 cut(s) 98, 216, 312
MspR9I CCNGG 4 cut(s) 489, 951, 1004, 1044
MunI CAATTG 2 cut(s) 395, 462
MvaI CCWGG 4 cut(s) 489, 951, 1004, 1044
MwoI GCNNNNNNNGC 5 cut(s) 274, 352, 361, 419, 908
NarI GGCGCC 1 cut(s) 826
NdeII GATC 4 cut(s) 445, 535, 664, 1046
NlaIII CATG 1 cut(s) 1064
NlaIV GGNNCC 7 cut(s) 37, 64, 229, 414, 423, 827, 1179
NmuCI GTSAC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 331
PflFI GACNNNGTC 2 cut(s) 151, 364
PfoI TCCNGGA 1 cut(s) 1042
PinAI ACCGGT 1 cut(s) 311
PkrI GCNGC 4 cut(s) 221, 270, 354, 357
Ple19I CGATCG 1 cut(s) 448
PleI GAGTC 6 cut(s) 115, 256, 319, 384, 1007, 1077
PluTI GGCGCC 1 cut(s) 829
PpsI GAGTC 6 cut(s) 115, 256, 319, 384, 1007, 1077
PpuMI RGGWCCY 1 cut(s) 947
PsiI TTATAA 2 cut(s) 477, 1166
Psp124BI GAGCTC 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 947
Psp6I CCWGG 4 cut(s) 487, 949, 1002, 1042
PspEI GGTNACC 1 cut(s) 491
PspGI CCWGG 4 cut(s) 487, 949, 1002, 1042
PspN4I GGNNCC 7 cut(s) 37, 64, 229, 414, 423, 827, 1179
PspPI GGNCC 2 cut(s) 228, 947
PspPPI RGGWCCY 1 cut(s) 947
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 2 cut(s) 151, 364
PvuI CGATCG 1 cut(s) 448
RsaI GTAC 3 cut(s) 343, 619, 975
RsaNI GTAC 3 cut(s) 342, 618, 974
RseI CAYNNNNRTG 1 cut(s) 407
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 510, 660, 887
SatI GCNGC 4 cut(s) 220, 269, 353, 356
Sau3AI GATC 4 cut(s) 445, 535, 664, 1046
Sau96I GGNCC 2 cut(s) 228, 947
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 6 cut(s) 115, 256, 319, 385, 1008, 1078
ScrFI CCNGG 4 cut(s) 489, 951, 1004, 1044
SduI GDGCHC 2 cut(s) 13, 40
SfaNI GCATC 3 cut(s) 523, 700, 738
SfcI CTRYAG 1 cut(s) 1188
SfoI GGCGCC 1 cut(s) 827
SgrAI CRCCGGYG 2 cut(s) 215, 311
SinI GGWCC 1 cut(s) 947
SmiMI CAYNNNNRTG 1 cut(s) 407
Sse9I AATT 3 cut(s) 395, 462, 1009
SsiI CCGC 4 cut(s) 111, 180, 219, 539
SspDI GGCGCC 1 cut(s) 825
SspMI CTAG 4 cut(s) 168, 860, 933, 966
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 4 cut(s) 487, 949, 1002, 1042
TaaI ACNGT 1 cut(s) 939
TaiI ACGT 3 cut(s) 47, 203, 744
TaqI TCGA 2 cut(s) 104, 143
TasI AATT 3 cut(s) 395, 462, 1009
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 3 cut(s) 510, 660, 887
Tru9I TTAA 3 cut(s) 510, 660, 887
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 3 cut(s) 268, 352, 355
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 3 cut(s) 708, 905, 1077
TspGWI ACGGA 2 cut(s) 66, 324
Tth111I GACNNNGTC 2 cut(s) 151, 364
VpaK11BI GGWCC 1 cut(s) 947
XapI RAATTY 1 cut(s) 1009
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 4 cut(s) 168, 860, 933, 966
ZraI GACGTC 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.