Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008011

Physical Location & Seq

Genomic Coordinates Forward (+)

54507492 .. 54512139

Gene Structure 4648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTCTTTTGGGGCCCTCCATCTAAATTTGTATCTGCTGGTTGGGAGCCTAAACAAGAGAAGAGTGATATACAAGTCATTGATAATGGGCGTACAGCTGACCGGCTGCTTAGTTGGATCAACAAGCAAATGGGCAGCTCATTTGGATTGGATGATCAGAAATTTGAAAATGACCATCTTCCATCAAATGCGTCAGACCCTGGACAGATTGCTCGTGCTGTCTATGATGTCGAGGAGGCAACATCCACAGCTTTTGAAATTATCTTAGAACACAAGATGATCAAATCAGAAACACGGGCCTCACTAGTTAAATTTCTTCAACTTATGGTAGCTCACAATCCTTCAAGGAGGTGCCGGAAGGGAGGTGCAGAGGTGCTTGTGAATTTTGATGACGTATACCCACTAGATGTGTGGTCAGATAACAGACATGAAGACCAAGATGGAAAGGGTGCCCTGGGAAATATTCAGATTTGTGGTAGAGATGTTCCTCGTGGGTATTGGATGTTCTGTCGTGGTAGCAAGAATGATACCAGGGGATTTAGCTGCGGATTATGGGTTCTTCTTCATTCACTGTCGGTGCGAATTGAGGATGGAGAGAGCTCTTTTGCGTTCTCCACCATTTGTGATTTTGTACACAACTTCTTTATCTGTGAGGAGTGTCGCCAACATTTTTATGACATGTGTTCAAGGGTTTCTAGTCCTTTCAACAAATCCCGTGACTTTGCCCTTTGGCTGTGGACTGCGCACAATAAAGTCAATGAGAGACTAATTAAAGAGGAAGCCTCTCTAGGAACTGGTGATCCCAAATTCCCAAAGATGATTTGGCCTCCAAGGCAACTTTGCTCATCTTGTTACCGCTCCCAGAAGAACAACAATATTGATTGGGACGAGGATGCTGTGTTCAACTTTTTGACCAATTATTATGGGAAGACGCTTGTTTCTCTAAACAAAGATAAGGGTCTTAATGGGATTGATGGGACCAATGCAGCGCTTGAAGATTTAGTTCCTTCAACAAACGCTATTGTGGTGCCTCTGGGGGCTGCATTTGCCATTGCTGTTGCCAGTTGTGCATTTGGGGCACTCGCTTGCTACTGGCGTTCACAGCAGAAGAGTCGGAAGTATTTCCACCATCTACACTCTTTAAAGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

384

Amino Acids

43.48

Weight (kDa)

6.6

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	182 - 264	2e-19	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15020 AT1G15020 AT1G15020 AT2G01270 AT2G01270 AT2G01270
fragaria_vesca	FvH4_4g32120 FvH4_4g32120 FvH4_4g32120
malus_domestica	MD13G1028500.v1.1
prunus_persica	Prupe.1G321800_v2.0.a1 Prupe.1G321800_v2.0.a1
pyrus_communis	pycom13g02680
rosa_chinensis	RchiOBHm_Chr4g0440821
rosa_laevigata	RLG00000006146
rosa_multiflora	Rmu_sc0005054.1_g000015
rosa_roxburghii	Rroxscaffold_5G00381650
rosa_rugosa	Rorug04G0328200 Rorug04G0328300
rosa_samantha	Rh4AG380300 Rh4BG393000 Rh4CG407800 Rh4DG386900
rosa_wichuraiana	Rw4G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	744
AccB1I	GGYRCC	3 cut(s)	351, 449, 1027
AccBSI	CCGCTC	1 cut(s)	858
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	2 cut(s)	546, 856
AclWI	GGATC	2 cut(s)	125, 794
AcsI	RAATTY	5 cut(s)	26, 161, 311, 382, 806
AfaI	GTAC	2 cut(s)	94, 633
AfeI	AGCGCT	1 cut(s)	990
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	9 cut(s)	167, 257, 320, 345, 687, 706, 904, 995, 1011
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	199, 453, 530
AloI	GAACNNNNNNTCC	6 cut(s)	540, 572, 784, 816, 884, 916
AluBI	AGCT	6 cut(s)	98, 138, 251, 332, 543, 600
AluI	AGCT	6 cut(s)	98, 138, 251, 332, 543, 600
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	1 cut(s)	757
AlwI	GGATC	2 cut(s)	125, 794
AlwNI	CAGNNNCTG	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	990
AoxI	GGCC	3 cut(s)	13, 297, 824
ApaI	GGGCCC	1 cut(s)	17
ApeKI	GCWGC	5 cut(s)	106, 135, 543, 986, 1040
ApoI	RAATTY	5 cut(s)	26, 161, 311, 382, 806
Asp700I	GAANNNNTTC	1 cut(s)	1121
AspLEI	GCGC	2 cut(s)	745, 991
AspS9I	GGNCC	4 cut(s)	13, 14, 297, 978
AsuHPI	GGTGA	1 cut(s)	809
AvaII	GGWCC	1 cut(s)	978
BaeGI	GKGCMC	3 cut(s)	17, 454, 1081
BanI	GGYRCC	3 cut(s)	351, 449, 1027
BanII	GRGCYC	2 cut(s)	17, 602
BauI	CACGAG	2 cut(s)	213, 489
BbsI	GAAGAC	2 cut(s)	438, 935
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	5 cut(s)	93, 147, 530, 998, 1027
BccI	CCATC	7 cut(s)	28, 183, 190, 434, 584, 968, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	3 cut(s)	201, 455, 532
BclI	TGATCA	2 cut(s)	154, 279
BcoDI	GTCTC	1 cut(s)	757
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	4 cut(s)	305, 404, 696, 788
BfoI	RGCGCY	1 cut(s)	992
BglI	GCCNNNNNGGC	1 cut(s)	832
BisI	GCNGC	5 cut(s)	107, 136, 544, 987, 1041
BlsI	GCNGC	5 cut(s)	108, 137, 545, 988, 1042
Bme1390I	CCNGG	3 cut(s)	201, 455, 532
Bme18I	GGWCC	1 cut(s)	978
BmgT120I	GGNCC	4 cut(s)	13, 14, 297, 978
BmiI	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 979, 1029
BmrFI	CCNGG	3 cut(s)	201, 455, 532
BmsI	GCATC	1 cut(s)	883
BpiI	GAAGAC	2 cut(s)	438, 935
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BsaJI	CCNNGG	5 cut(s)	199, 453, 454, 531, 830
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	3 cut(s)	799, 1062, 1097
Bse3DI	GCAATG	1 cut(s)	1050
BseBI	CCWGG	3 cut(s)	201, 455, 532
BseDI	CCNNGG	5 cut(s)	199, 453, 454, 531, 830
BseGI	GGATG	5 cut(s)	157, 242, 507, 595, 898
BseMI	GCAATG	1 cut(s)	1050
BseNI	ACTGG	3 cut(s)	799, 1062, 1097
BseRI	GAGGAG	2 cut(s)	248, 668
BseSI	GKGCMC	3 cut(s)	17, 454, 1081
BseXI	GCAGC	5 cut(s)	93, 147, 530, 998, 1027
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	15, 299, 826
BshNI	GGYRCC	3 cut(s)	351, 449, 1027
BsiHKAI	GWGCWC	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	103, 355
BslFI	GGGAC	2 cut(s)	899, 991
BsmAI	GTCTC	1 cut(s)	757
BsmFI	GGGAC	2 cut(s)	899, 991
BsnI	GGCC	3 cut(s)	15, 299, 826
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	4 cut(s)	17, 454, 602, 1081
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	4 cut(s)	117, 154, 279, 799
BspACI	CCGC	2 cut(s)	546, 856
BspANI	GGCC	3 cut(s)	15, 299, 826
BspLI	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 979, 1029
BspPI	GGATC	2 cut(s)	125, 794
BspT107I	GGYRCC	3 cut(s)	351, 449, 1027
BsrBI	CCGCTC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	1050
BsrFI	RCCGGY	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	799, 1062, 1097
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	5 cut(s)	199, 453, 454, 531, 830
BssMI	GATC	4 cut(s)	117, 154, 279, 799
BssNAI	GTATAC	1 cut(s)	397
BssSI	CACGAG	2 cut(s)	213, 489
BssT1I	CCWWGG	1 cut(s)	830
Bst1107I	GTATAC	1 cut(s)	397
Bst2BI	CACGAG	2 cut(s)	213, 489
Bst2UI	CCWGG	3 cut(s)	201, 455, 532
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	2 cut(s)	56, 1103
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	1087
BstDEI	CTNAG	2 cut(s)	110, 265
BstF5I	GGATG	5 cut(s)	157, 242, 507, 595, 898
BstH2I	RGCGCY	1 cut(s)	992
BstHHI	GCGC	2 cut(s)	745, 991
BstKTI	GATC	4 cut(s)	120, 157, 282, 802
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	4 cut(s)	117, 154, 279, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	832, 1046, 1067, 1076, 1102
BstNI	CCWGG	3 cut(s)	201, 455, 532
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	3 cut(s)	199, 453, 530
BstSLI	GKGCMC	3 cut(s)	17, 454, 1081
BstV1I	GCAGC	5 cut(s)	93, 147, 530, 998, 1027
BstV2I	GAAGAC	2 cut(s)	438, 935
BstZ17I	GTATAC	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	15, 299, 826
BtsCI	GGATG	5 cut(s)	157, 242, 507, 595, 898
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	1 cut(s)	1087
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	2 cut(s)	745, 991
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	4 cut(s)	13, 14, 297, 978
CseI	GACGC	2 cut(s)	180, 940
Csp6I	GTAC	2 cut(s)	93, 632
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	2 cut(s)	428, 679
CviQI	GTAC	2 cut(s)	93, 632
DdeI	CTNAG	2 cut(s)	110, 265
DpnI	GATC	4 cut(s)	119, 156, 281, 801
DpnII	GATC	4 cut(s)	117, 154, 279, 799
DraI	TTTAAA	1 cut(s)	1143
Eam1104I	CTCTTC	2 cut(s)	56, 1103
EarI	CTCTTC	2 cut(s)	56, 1103
Ecl136II	GAGCTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	830
Eco24I	GRGCYC	2 cut(s)	17, 602
Eco47I	GGWCC	1 cut(s)	978
Eco47III	AGCGCT	1 cut(s)	990
Eco53kI	GAGCTC	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	600
EcoO109I	RGGNCCY	2 cut(s)	13, 14
EcoRII	CCWGG	3 cut(s)	199, 453, 530
EcoT14I	CCWWGG	1 cut(s)	830
EcoT38I	GRGCYC	2 cut(s)	17, 602
ErhI	CCWWGG	1 cut(s)	830
FaeI	CATG	2 cut(s)	431, 682
FaiI	YATR	9 cut(s)	71, 225, 326, 397, 429, 553, 675, 680, 924
FaqI	GGGAC	2 cut(s)	899, 991
FatI	CATG	2 cut(s)	427, 678
FbaI	TGATCA	2 cut(s)	154, 279
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	5 cut(s)	107, 136, 544, 987, 1041
FokI	GGATG	5 cut(s)	164, 229, 514, 602, 905
FriOI	GRGCYC	2 cut(s)	17, 602
Fsp4HI	GCNGC	5 cut(s)	107, 136, 544, 987, 1041
FspBI	CTAG	4 cut(s)	305, 404, 696, 788
FspI	TGCGCA	1 cut(s)	744
GlaI	GCGC	2 cut(s)	744, 990
GluI	GCNGC	5 cut(s)	107, 136, 544, 987, 1041
HaeII	RGCGCY	1 cut(s)	992
HaeIII	GGCC	3 cut(s)	15, 299, 826
HapII	CCGG	2 cut(s)	103, 355
HgaI	GACGC	2 cut(s)	180, 940
HhaI	GCGC	2 cut(s)	745, 991
Hin1II	CATG	2 cut(s)	431, 682
Hin6I	GCGC	2 cut(s)	743, 989
HinP1I	GCGC	2 cut(s)	743, 989
HinfI	GANTC	1 cut(s)	1111
HpaII	CCGG	2 cut(s)	103, 355
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	4 cut(s)	397, 634, 738, 1100
Hpy188I	TCNGA	6 cut(s)	159, 196, 289, 418, 468, 1116
Hpy8I	GTNNAC	4 cut(s)	397, 634, 738, 1100
HpyAV	CCTTC	3 cut(s)	351, 352, 1017
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	368, 986, 1043, 1070
HpyF10VI	GCNNNNNNNGC	5 cut(s)	832, 1046, 1067, 1076, 1102
HpyF3I	CTNAG	2 cut(s)	110, 265
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	431, 682
HspAI	GCGC	2 cut(s)	743, 989
Ksp22I	TGATCA	2 cut(s)	154, 279
Kzo9I	GATC	4 cut(s)	117, 154, 279, 799
LmnI	GCTCC	2 cut(s)	46, 863
Lsp1109I	GCAGC	5 cut(s)	93, 147, 530, 998, 1027
LweI	GCATC	1 cut(s)	883
MaeI	CTAG	4 cut(s)	305, 404, 696, 788
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	716, 851
MalI	GATC	4 cut(s)	119, 156, 281, 801
MbiI	CCGCTC	1 cut(s)	858
MboI	GATC	4 cut(s)	117, 154, 279, 799
MhlI	GDGCHC	4 cut(s)	17, 454, 602, 1081
MluCI	AATT	9 cut(s)	26, 161, 258, 311, 382, 582, 768, 806, 916
MlyI	GAGTC	1 cut(s)	1120
MmeI	TCCRAC	2 cut(s)	95, 1094
MroXI	GAANNNNTTC	1 cut(s)	1121
MseI	TTAA	4 cut(s)	309, 771, 963, 1142
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	103, 355
MspR9I	CCNGG	3 cut(s)	201, 455, 532
MvaI	CCWGG	3 cut(s)	201, 455, 532
MwoI	GCNNNNNNNGC	5 cut(s)	832, 1046, 1067, 1076, 1102
NdeII	GATC	4 cut(s)	117, 154, 279, 799
NlaIII	CATG	2 cut(s)	431, 682
NlaIV	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 979, 1029
NmuCI	GTSAC	1 cut(s)	716
NsbI	TGCGCA	1 cut(s)	744
NspI	RCATGY	1 cut(s)	682
PasI	CCCWGGG	1 cut(s)	454
PciI	ACATGT	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	1121
PkrI	GCNGC	5 cut(s)	108, 137, 545, 988, 1042
PleI	GAGTC	1 cut(s)	1119
PpsI	GAGTC	1 cut(s)	1119
PscI	ACATGT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	3 cut(s)	199, 453, 530
PspGI	CCWGG	3 cut(s)	199, 453, 530
PspN4I	GGNNCC	7 cut(s)	14, 15, 48, 353, 451, 979, 1029
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	4 cut(s)	13, 14, 297, 978
PsrI	GAACNNNNNNTAC	2 cut(s)	488, 520
PstNI	CAGNNNCTG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	94, 633
RsaNI	GTAC	2 cut(s)	93, 632
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	602
SaqAI	TTAA	4 cut(s)	309, 771, 963, 1142
SatI	GCNGC	5 cut(s)	107, 136, 544, 987, 1041
Sau3AI	GATC	4 cut(s)	117, 154, 279, 799
Sau96I	GGNCC	4 cut(s)	13, 14, 297, 978
SchI	GAGTC	1 cut(s)	1120
ScrFI	CCNGG	3 cut(s)	201, 455, 532
SduI	GDGCHC	4 cut(s)	17, 454, 602, 1081
SfaNI	GCATC	1 cut(s)	883
SinI	GGWCC	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	672
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	9 cut(s)	26, 161, 258, 311, 382, 582, 768, 806, 916
SsiI	CCGC	2 cut(s)	546, 856
SspI	AATATT	2 cut(s)	463, 877
SspMI	CTAG	4 cut(s)	305, 404, 696, 788
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	199, 453, 530
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	231
TasI	AATT	9 cut(s)	26, 161, 258, 311, 382, 582, 768, 806, 916
TatI	WGTACW	1 cut(s)	631
Tru1I	TTAA	4 cut(s)	309, 771, 963, 1142
Tru9I	TTAA	4 cut(s)	309, 771, 963, 1142
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	5 cut(s)	106, 135, 543, 986, 1040
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	2 cut(s)	444, 554
TspRI	CASTG	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	978
XapI	RAATTY	5 cut(s)	26, 161, 311, 382, 806
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	2 cut(s)	408, 819
XmiI	GTMKAC	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	1121
XspI	CTAG	4 cut(s)	305, 404, 696, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.