Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008011

Physical Location & Seq

Genomic Coordinates Forward (+)

60350345 .. 60355076

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCTCTTTTGGGGCCCTCCATCTAAATTTGTATCTGCTGGTTGGGAGCCTAAACAAGAGAAGAGTGATATACAAGTCATTGATAATGGGCGTACAGCTGACCGGCTGCTTAGTTGGATCAACAAGAAAATGGGCAGCTCATTTGGATTGGATGATCAGAAATTTGAAAATGACCATCTTCCATCAAATGCGTCAGACCCTGGACAGATTGCTCGGGCTGTCTATGATGTCGAGGAGGCAACATCCACAGCTTTTGAAATTATCCTAGAACATAAGATGATCAAATCAGAAACACGGGCCTCACTAGTTAAATTTCTTCAACTTATGGTAGCTCACCATCCTTCAAGGAGGTGCCGGAAGGGAAGTGCAGAGGTACTTGTGAATTTTGATGACATGTACCCACTAGATGCATGGTCAGATAACAGACATGGAAAAGGTGCCCTGGGAAATATTCAGATTTGTGGTAGAGATGTTCCTCGTGGGTATTGGATGTTCTGTCGTGGTAGCAAGAATGATACCAGGGGATTTAGCTGCGGATTATGGGTTCTTCTTCATTCACTCTCGGTGCGAATTGAGGATGGAGAGAGCTCGTTTGCGTTCTCCACCATTTGTGATTTTGTACACAATTTCTTTATCTGTGAGGAGTGTCGCCAACATTTTTATGACATGTGTTCAAGGGTTTCTAGTCCTTTCAACAAATCCCGTGACTTTGCCCTTTGGCTGTGGAGTGCGCACAATAAAGTCAATGAGAGACTTATTAAAGAGGAAGCCTCTTTAGGAACTGGTGATCCCAAATTCCCAAAGATGATTTGGCCTCCAAGGCAACTTTGTTCTTCTTGTTACCGCTCCCAGAAGAACAACGATATTGATTGGGACGAGGATGCTGTGTTCAACTTTTTGACCAATTATTATGGGAAGACGCTTGTTTCTCTAAACAAAGATAAGGGTCTTAATGGGAATGATGGGACCAATGCAGCGCTTGAAGATTTAGTTCCTTCAACAAATGCGATTGTGGTGCCTCTGGGAGCTGCATTAGCCATTGCTGTTGCTAGTTGTGCATTTGGGGCACTTGCTTGCTACTGGCGTTCACAACAGAAGAGTCGGAAGTATTTCCACCAACTACACTCTTTAAAGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0010959 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016667 GO:0016670 GO:0016853 GO:0016860 GO:0016864 GO:0016971 GO:0016972 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0043157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0055114 GO:0065007 GO:0097708 GO:0098588 GO:0098791 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr Thioredoxin

Protein Analysis

380

Amino Acids

42.99

Weight (kDa)

7.55

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	178 - 260	1.3e-19	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15020 AT1G15020 AT1G15020 AT2G01270 AT2G01270 AT2G01270
fragaria_vesca	FvH4_4g32120 FvH4_4g32120 FvH4_4g32120
malus_domestica	MD13G1028500.v1.1
prunus_persica	Prupe.1G321800_v2.0.a1 Prupe.1G321800_v2.0.a1
pyrus_communis	pycom13g02680
rosa_chinensis	RchiOBHm_Chr4g0440821
rosa_laevigata	RLG00000006146
rosa_multiflora	Rmu_sc0005054.1_g000015
rosa_roxburghii	Rroxscaffold_5G00381650
rosa_rugosa	Rorug04G0328200 Rorug04G0328300
rosa_samantha	Rh4AG380300 Rh4BG393000 Rh4CG407800 Rh4DG386900
rosa_wichuraiana	Rw4G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	732
AccB1I	GGYRCC	3 cut(s)	351, 437, 1015
AccBSI	CCGCTC	1 cut(s)	846
AciI	CCGC	2 cut(s)	534, 844
AclWI	GGATC	2 cut(s)	125, 782
AcsI	RAATTY	5 cut(s)	26, 161, 311, 382, 794
AfaI	GTAC	4 cut(s)	94, 375, 398, 621
AfeI	AGCGCT	1 cut(s)	978
AflIII	ACRYGT	2 cut(s)	393, 666
AgsI	TTSAA	9 cut(s)	167, 257, 320, 345, 675, 694, 892, 983, 999
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	199, 441, 518
AloI	GAACNNNNNNTCC	6 cut(s)	528, 560, 772, 804, 872, 904
AluBI	AGCT	7 cut(s)	98, 138, 251, 332, 531, 588, 1028
AluI	AGCT	7 cut(s)	98, 138, 251, 332, 531, 588, 1028
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	1 cut(s)	745
AlwI	GGATC	2 cut(s)	125, 782
AlwNI	CAGNNNCTG	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	213
Aor51HI	AGCGCT	1 cut(s)	978
AoxI	GGCC	3 cut(s)	13, 297, 812
ApaI	GGGCCC	1 cut(s)	17
ApeKI	GCWGC	5 cut(s)	106, 135, 531, 974, 1028
ApoI	RAATTY	5 cut(s)	26, 161, 311, 382, 794
Asp700I	GAANNNNTTC	1 cut(s)	1109
AspLEI	GCGC	2 cut(s)	733, 979
AspS9I	GGNCC	4 cut(s)	13, 14, 297, 966
AsuHPI	GGTGA	2 cut(s)	326, 797
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	966
BaeGI	GKGCMC	3 cut(s)	17, 442, 1069
BanI	GGYRCC	3 cut(s)	351, 437, 1015
BanII	GRGCYC	2 cut(s)	17, 590
BauI	CACGAG	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	923
Bbv12I	GWGCWC	1 cut(s)	590
BbvI	GCAGC	5 cut(s)	93, 147, 518, 986, 1015
BccI	CCATC	6 cut(s)	28, 183, 190, 345, 572, 956
BcgI	CGANNNNNNTGC	2 cut(s)	997, 1031
BciT130I	CCWGG	3 cut(s)	201, 443, 520
BclI	TGATCA	2 cut(s)	154, 279
BcoDI	GTCTC	1 cut(s)	745
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	5 cut(s)	266, 305, 404, 684, 1050
BfoI	RGCGCY	1 cut(s)	980
BglI	GCCNNNNNGGC	1 cut(s)	820
BisI	GCNGC	5 cut(s)	107, 136, 532, 975, 1029
BlsI	GCNGC	5 cut(s)	108, 137, 533, 976, 1030
Bme1390I	CCNGG	3 cut(s)	201, 443, 520
Bme18I	GGWCC	1 cut(s)	966
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	4 cut(s)	13, 14, 297, 966
BmiI	GGNNCC	7 cut(s)	14, 15, 48, 353, 439, 967, 1017
BmrFI	CCNGG	3 cut(s)	201, 443, 520
BmsI	GCATC	2 cut(s)	397, 871
BpiI	GAAGAC	1 cut(s)	923
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
BsaJI	CCNNGG	5 cut(s)	199, 441, 442, 519, 818
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	787, 1085
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	3 cut(s)	201, 443, 520
BseDI	CCNNGG	5 cut(s)	199, 441, 442, 519, 818
BseGI	GGATG	6 cut(s)	157, 242, 337, 495, 583, 886
BseMI	GCAATG	1 cut(s)	1038
BseNI	ACTGG	2 cut(s)	787, 1085
BseRI	GAGGAG	2 cut(s)	248, 656
BseSI	GKGCMC	3 cut(s)	17, 442, 1069
BseXI	GCAGC	5 cut(s)	93, 147, 518, 986, 1015
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	15, 299, 814
BshNI	GGYRCC	3 cut(s)	351, 437, 1015
BsiHKAI	GWGCWC	1 cut(s)	590
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	103, 355
BslFI	GGGAC	2 cut(s)	887, 979
BsmAI	GTCTC	1 cut(s)	745
BsmFI	GGGAC	2 cut(s)	887, 979
BsnI	GGCC	3 cut(s)	15, 299, 814
BsoBI	CYCGRG	1 cut(s)	213
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	4 cut(s)	17, 442, 590, 1069
Bsp1407I	TGTACA	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	117, 154, 279, 787
BspACI	CCGC	2 cut(s)	534, 844
BspANI	GGCC	3 cut(s)	15, 299, 814
BspLI	GGNNCC	7 cut(s)	14, 15, 48, 353, 439, 967, 1017
BspPI	GGATC	2 cut(s)	125, 782
BspT107I	GGYRCC	3 cut(s)	351, 437, 1015
BsrBI	CCGCTC	1 cut(s)	846
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	787, 1085
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	5 cut(s)	199, 441, 442, 519, 818
BssMI	GATC	4 cut(s)	117, 154, 279, 787
BssSI	CACGAG	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	818
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	3 cut(s)	201, 443, 520
Bst6I	CTCTTC	2 cut(s)	56, 1091
BstAUI	TGTACA	1 cut(s)	619
BstC8I	GCNNGC	1 cut(s)	1075
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	6 cut(s)	157, 242, 337, 495, 583, 886
BstH2I	RGCGCY	1 cut(s)	980
BstHHI	GCGC	2 cut(s)	733, 979
BstKTI	GATC	4 cut(s)	120, 157, 282, 790
BstMAI	GTCTC	1 cut(s)	745
BstMBI	GATC	4 cut(s)	117, 154, 279, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	820, 1034, 1055, 1064
BstNI	CCWGG	3 cut(s)	201, 443, 520
BstNSI	RCATGY	2 cut(s)	397, 670
BstSCI	CCNGG	3 cut(s)	199, 441, 518
BstSLI	GKGCMC	3 cut(s)	17, 442, 1069
BstV1I	GCAGC	5 cut(s)	93, 147, 518, 986, 1015
BstV2I	GAAGAC	1 cut(s)	923
BsuRI	GGCC	3 cut(s)	15, 299, 814
BtsCI	GGATG	6 cut(s)	157, 242, 337, 495, 583, 886
Cac8I	GCNNGC	1 cut(s)	1075
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	2 cut(s)	733, 979
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	4 cut(s)	13, 14, 297, 966
CseI	GACGC	2 cut(s)	180, 928
Csp6I	GTAC	4 cut(s)	93, 374, 397, 620
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	4 cut(s)	394, 411, 428, 667
CviQI	GTAC	4 cut(s)	93, 374, 397, 620
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	4 cut(s)	119, 156, 281, 789
DpnII	GATC	4 cut(s)	117, 154, 279, 787
DraI	TTTAAA	1 cut(s)	1131
Eam1104I	CTCTTC	2 cut(s)	56, 1091
EarI	CTCTTC	2 cut(s)	56, 1091
Ecl136II	GAGCTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	818
Eco24I	GRGCYC	2 cut(s)	17, 590
Eco47I	GGWCC	1 cut(s)	966
Eco47III	AGCGCT	1 cut(s)	978
Eco53kI	GAGCTC	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	588
EcoO109I	RGGNCCY	2 cut(s)	13, 14
EcoRII	CCWGG	3 cut(s)	199, 441, 518
EcoT14I	CCWWGG	1 cut(s)	818
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	2 cut(s)	17, 590
ErhI	CCWWGG	1 cut(s)	818
FaeI	CATG	4 cut(s)	397, 414, 431, 670
FaqI	GGGAC	2 cut(s)	887, 979
FatI	CATG	4 cut(s)	393, 410, 427, 666
FbaI	TGATCA	2 cut(s)	154, 279
Fnu4HI	GCNGC	5 cut(s)	107, 136, 532, 975, 1029
FokI	GGATG	6 cut(s)	164, 229, 324, 502, 590, 893
FriOI	GRGCYC	2 cut(s)	17, 590
Fsp4HI	GCNGC	5 cut(s)	107, 136, 532, 975, 1029
FspAI	RTGCGCAY	1 cut(s)	732
FspBI	CTAG	5 cut(s)	266, 305, 404, 684, 1050
FspI	TGCGCA	1 cut(s)	732
GlaI	GCGC	2 cut(s)	732, 978
GluI	GCNGC	5 cut(s)	107, 136, 532, 975, 1029
HaeII	RGCGCY	1 cut(s)	980
HaeIII	GGCC	3 cut(s)	15, 299, 814
HapII	CCGG	2 cut(s)	103, 355
HgaI	GACGC	2 cut(s)	180, 928
HhaI	GCGC	2 cut(s)	733, 979
Hin1II	CATG	4 cut(s)	397, 414, 431, 670
Hin6I	GCGC	2 cut(s)	731, 977
HinP1I	GCGC	2 cut(s)	731, 977
HinfI	GANTC	1 cut(s)	1099
HpaII	CCGG	2 cut(s)	103, 355
HphI	GGTGA	2 cut(s)	326, 797
Hpy166II	GTNNAC	2 cut(s)	622, 1088
Hpy188I	TCNGA	6 cut(s)	159, 196, 289, 418, 456, 1104
Hpy8I	GTNNAC	2 cut(s)	622, 1088
HpyAV	CCTTC	3 cut(s)	351, 352, 1005
HpyCH4V	TGCA	5 cut(s)	368, 410, 974, 1031, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	820, 1034, 1055, 1064
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	397, 414, 431, 670
HspAI	GCGC	2 cut(s)	731, 977
Ksp22I	TGATCA	2 cut(s)	154, 279
Kzo9I	GATC	4 cut(s)	117, 154, 279, 787
LmnI	GCTCC	3 cut(s)	46, 851, 1025
Lsp1109I	GCAGC	5 cut(s)	93, 147, 518, 986, 1015
LweI	GCATC	2 cut(s)	397, 871
MaeI	CTAG	5 cut(s)	266, 305, 404, 684, 1050
MaeIII	GTNAC	2 cut(s)	704, 839
MalI	GATC	4 cut(s)	119, 156, 281, 789
MbiI	CCGCTC	1 cut(s)	846
MboI	GATC	4 cut(s)	117, 154, 279, 787
MhlI	GDGCHC	4 cut(s)	17, 442, 590, 1069
MluCI	AATT	9 cut(s)	26, 161, 258, 311, 382, 570, 625, 794, 904
MlyI	GAGTC	1 cut(s)	1108
MmeI	TCCRAC	2 cut(s)	95, 1082
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	1109
MseI	TTAA	4 cut(s)	309, 759, 951, 1130
MslI	CAYNNNNRTG	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	103, 355
MspR9I	CCNGG	3 cut(s)	201, 443, 520
MvaI	CCWGG	3 cut(s)	201, 443, 520
MwoI	GCNNNNNNNGC	4 cut(s)	820, 1034, 1055, 1064
NdeII	GATC	4 cut(s)	117, 154, 279, 787
NlaIII	CATG	4 cut(s)	397, 414, 431, 670
NlaIV	GGNNCC	7 cut(s)	14, 15, 48, 353, 439, 967, 1017
NmuCI	GTSAC	1 cut(s)	704
NsbI	TGCGCA	1 cut(s)	732
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	397, 670
PasI	CCCWGGG	1 cut(s)	442
PciI	ACATGT	2 cut(s)	393, 666
PdmI	GAANNNNTTC	1 cut(s)	1109
PkrI	GCNGC	5 cut(s)	108, 137, 533, 976, 1030
PleI	GAGTC	1 cut(s)	1107
PpsI	GAGTC	1 cut(s)	1107
PscI	ACATGT	2 cut(s)	393, 666
Psp124BI	GAGCTC	1 cut(s)	590
Psp6I	CCWGG	3 cut(s)	199, 441, 518
PspGI	CCWGG	3 cut(s)	199, 441, 518
PspN4I	GGNNCC	7 cut(s)	14, 15, 48, 353, 439, 967, 1017
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	4 cut(s)	13, 14, 297, 966
PsrI	GAACNNNNNNTAC	2 cut(s)	476, 508
PstNI	CAGNNNCTG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	4 cut(s)	94, 375, 398, 621
RsaNI	GTAC	4 cut(s)	93, 374, 397, 620
RseI	CAYNNNNRTG	1 cut(s)	660
SacI	GAGCTC	1 cut(s)	590
SaqAI	TTAA	4 cut(s)	309, 759, 951, 1130
SatI	GCNGC	5 cut(s)	107, 136, 532, 975, 1029
Sau3AI	GATC	4 cut(s)	117, 154, 279, 787
Sau96I	GGNCC	4 cut(s)	13, 14, 297, 966
SchI	GAGTC	1 cut(s)	1108
ScrFI	CCNGG	3 cut(s)	201, 443, 520
SduI	GDGCHC	4 cut(s)	17, 442, 590, 1069
SfaNI	GCATC	2 cut(s)	397, 871
SinI	GGWCC	1 cut(s)	966
SmiMI	CAYNNNNRTG	1 cut(s)	660
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	9 cut(s)	26, 161, 258, 311, 382, 570, 625, 794, 904
SsiI	CCGC	2 cut(s)	534, 844
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	5 cut(s)	266, 305, 404, 684, 1050
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	3 cut(s)	199, 441, 518
StyI	CCWWGG	1 cut(s)	818
TaqI	TCGA	1 cut(s)	231
TasI	AATT	9 cut(s)	26, 161, 258, 311, 382, 570, 625, 794, 904
TatI	WGTACW	1 cut(s)	619
Tru1I	TTAA	4 cut(s)	309, 759, 951, 1130
Tru9I	TTAA	4 cut(s)	309, 759, 951, 1130
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	5 cut(s)	106, 135, 531, 974, 1028
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	966
XapI	RAATTY	5 cut(s)	26, 161, 311, 382, 794
XceI	RCATGY	2 cut(s)	397, 670
XcmI	CCANNNNNNNNNTGG	2 cut(s)	408, 807
XmnI	GAANNNNTTC	1 cut(s)	1109
XspI	CTAG	5 cut(s)	266, 305, 404, 684, 1050
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.