Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011115

Physical Location & Seq

Genomic Coordinates Reverse (-)

31297875 .. 31299678

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGACAAGAACCTCCTGGGACTTCTCCGCCTTCGGATCAAGCGAGGTATCAACCTCGCCGTCCGCGACTATGTCACCAGCGACCCTTACATCATCGTAACCATGGGGCGCCACAGGCTCAAGACTCGCGTGATCAAGAATAATTTAAACCCAGAGTGGAACGAGGAACTCACTCTTTCGATGACCGACATCAACGAGCCTATCCTTCTCAACGTCTACGACAAAGACCGTTTCACCCGCGACGACCCCATGGGCGATGCAGTGGTTGACATCAAGCCCTACGTGGAGTGCCTGAAACTGGCGCCGGAGTTGGAGAAGCTCCCAGATGGGTGTGCGTTGAAGAAAGTCCAGCCCAGCAGGAACAACTGCCTGGCCACCGGGAGCTGTTGCACTTGGCACGAGGGGAAGATCATCCAGGACATGAGACTTAAGCTGAGGAATGTGGAGTGTGGGGAAGTTGTAGTCCAGATTGAGTGGATTGATGTTCCGGGTTCTAAAGGTTTAGCAAATGTTCAGCCTCTGAATTATGAGGCATTGGGTTTAGCTAGACTGAATACTCTAGTCCTTCAACTGCAAAAATCAGGGGCTTACATGGTGGTGAAGATCATCATTGAGATGGTACGAATGAAGCTTGCTGGATCAGATGAAGGGATTGGAAGTGTCATTAACGATCTTGAAGTACCCGAAGAATCTGTAGAGCTAAGGATGAATGTGGTATCTGAGCCTAGCTATCCAAAAGAAAAGGCAATCGAGGCAATTGAAACATTTTGGCAGTACGTTGAGATACTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

265

Amino Acids

29.91

Weight (kDa)

5.34

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	7 - 93	1.4e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70790 AT1G70790 AT1G70790 AT1G70790
fragaria_vesca	FvH4_4g32810 FvH4_4g32811
malus_domestica	MD13G1022400.v1.1 MD16G1023600.v1.1
prunus_persica	Prupe.1G329300_v2.0.a1
pyrus_communis	pycom13g02090
rosa_chinensis	RchiOBHm_Chr4g0441811
rosa_laevigata	RLG00000006064
rosa_multiflora	Rmu_sc0008316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382630
rosa_rugosa	Rorug04G0336500
rosa_samantha	Rh4AG387900 Rh4BG401600 Rh4CG416600 Rh4DG394900
rosa_wichuraiana	Rw4G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	108, 301
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	66, 129, 240
AciI	CCGC	3 cut(s)	28, 64, 238
AclWI	GGATC	2 cut(s)	44, 646
AcoI	YGGCCR	1 cut(s)	372
AcyI	GRCGYC	2 cut(s)	109, 302
AfaI	GTAC	3 cut(s)	621, 681, 776
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	340, 569, 677, 761
AjnI	CCWGG	3 cut(s)	15, 369, 414
AluBI	AGCT	7 cut(s)	319, 384, 433, 545, 631, 700, 729
AluI	AGCT	7 cut(s)	319, 384, 433, 545, 631, 700, 729
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	44, 646
AlwNI	CAGNNNCTG	1 cut(s)	520
AoxI	GGCC	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	111, 304
AsuC2I	CCSGG	2 cut(s)	379, 489
AsuHPI	GGTGA	3 cut(s)	67, 226, 610
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	108, 301
BauI	CACGAG	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	320, 610
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	17, 371, 416
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	379, 489
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	3 cut(s)	546, 560, 726
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	2 cut(s)	112, 305
BfrI	CTTAAG	1 cut(s)	428
Bme1390I	CCNGG	5 cut(s)	17, 371, 379, 416, 489
BmiI	GGNNCC	2 cut(s)	110, 303
BmrFI	CCNGG	5 cut(s)	17, 371, 379, 416, 489
BmsI	GCATC	1 cut(s)	247
Bpu10I	CCTNAGC	2 cut(s)	434, 701
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	379, 489
BsaAI	YACGTR	1 cut(s)	283
BsaHI	GRCGYC	2 cut(s)	109, 302
BsaJI	CCNNGG	3 cut(s)	16, 102, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	17, 371, 416
BseDI	CCNNGG	3 cut(s)	16, 102, 249
BseGI	GGATG	2 cut(s)	411, 711
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	425, 711
BseNI	ACTGG	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	3 cut(s)	66, 129, 240
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	2 cut(s)	108, 301
BsiSI	CCGG	3 cut(s)	305, 378, 488
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	374
Bsp143I	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
Bsp19I	CCATGG	2 cut(s)	102, 249
BspACI	CCGC	3 cut(s)	28, 64, 238
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	426, 712
BspFNI	CGCG	3 cut(s)	66, 129, 240
BspLI	GGNNCC	2 cut(s)	110, 303
BspPI	GGATC	2 cut(s)	44, 646
BspT107I	GGYRCC	2 cut(s)	108, 301
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	16, 102, 249
BssMI	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
BssNI	GRCGYC	2 cut(s)	109, 302
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	102, 249
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	3 cut(s)	17, 371, 416
Bst4CI	ACNGT	1 cut(s)	230
BstACI	GRCGYC	2 cut(s)	109, 302
BstAFI	CTTAAG	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	3 cut(s)	434, 701, 720
BstDSI	CCRYGG	2 cut(s)	102, 249
BstF5I	GGATG	2 cut(s)	411, 711
BstFNI	CGCG	3 cut(s)	66, 129, 240
BstH2I	RGCGCY	2 cut(s)	112, 305
BstHHI	GCGC	2 cut(s)	111, 304
BstKTI	GATC	6 cut(s)	39, 135, 411, 606, 641, 673
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 752
BstNI	CCWGG	3 cut(s)	17, 371, 416
BstSCI	CCNGG	5 cut(s)	15, 369, 377, 414, 487
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	3 cut(s)	66, 129, 240
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	2 cut(s)	102, 249
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	411, 711
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	520
CfoI	GCGC	2 cut(s)	111, 304
Csp6I	GTAC	3 cut(s)	620, 680, 775
CviAII	CATG	4 cut(s)	103, 250, 421, 592
CviQI	GTAC	3 cut(s)	620, 680, 775
DdeI	CTNAG	3 cut(s)	434, 701, 720
DinI	GGCGCC	2 cut(s)	110, 303
DpnI	GATC	6 cut(s)	38, 134, 410, 605, 640, 672
DpnII	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
DraI	TTTAAA	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	102, 249
EcoRII	CCWGG	3 cut(s)	15, 369, 414
EcoT14I	CCWWGG	2 cut(s)	102, 249
EgeI	GGCGCC	2 cut(s)	110, 303
EheI	GGCGCC	2 cut(s)	110, 303
ErhI	CCWWGG	2 cut(s)	102, 249
FaeI	CATG	4 cut(s)	106, 253, 424, 595
FaiI	YATR	6 cut(s)	72, 104, 251, 422, 528, 593
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	102, 249, 420, 591
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	2 cut(s)	398, 718
FspBI	CTAG	3 cut(s)	546, 560, 726
GlaI	GCGC	2 cut(s)	110, 303
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	2 cut(s)	112, 305
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	3 cut(s)	305, 378, 488
HhaI	GCGC	2 cut(s)	111, 304
Hin1I	GRCGYC	2 cut(s)	109, 302
Hin1II	CATG	4 cut(s)	106, 253, 424, 595
Hin6I	GCGC	2 cut(s)	109, 302
HinP1I	GCGC	2 cut(s)	109, 302
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	2 cut(s)	124, 689
HpaII	CCGG	3 cut(s)	305, 378, 488
HphI	GGTGA	3 cut(s)	67, 226, 610
Hpy166II	GTNNAC	2 cut(s)	217, 268
Hpy188I	TCNGA	4 cut(s)	36, 522, 643, 721
Hpy188III	TCNNGA	4 cut(s)	121, 136, 466, 674
Hpy8I	GTNNAC	2 cut(s)	217, 268
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	41, 215, 575, 641
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	3 cut(s)	213, 282, 777
HpyCH4V	TGCA	3 cut(s)	260, 390, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 752
HpyF3I	CTNAG	3 cut(s)	434, 701, 720
HpySE526I	ACGT	3 cut(s)	213, 282, 777
Hsp92I	GRCGYC	2 cut(s)	109, 302
Hsp92II	CATG	4 cut(s)	106, 253, 424, 595
HspAI	GCGC	2 cut(s)	109, 302
KasI	GGCGCC	2 cut(s)	108, 301
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
LmnI	GCTCC	2 cut(s)	324, 381
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	3 cut(s)	546, 560, 726
MaeII	ACGT	3 cut(s)	213, 282, 777
MaeIII	GTNAC	2 cut(s)	73, 97
MalI	GATC	6 cut(s)	38, 134, 410, 605, 640, 672
MboI	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
MboII	GAAGA	4 cut(s)	352, 418, 613, 698
MfeI	CAATTG	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	142, 523, 756
MluNI	TGGCCA	1 cut(s)	374
Mly113I	GGCGCC	2 cut(s)	109, 302
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	9 cut(s)	23, 38, 65, 157, 394, 429, 523, 528, 745
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	3 cut(s)	146, 429, 666
MslI	CAYNNNNRTG	2 cut(s)	596, 614
Msp20I	TGGCCA	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	3 cut(s)	305, 378, 488
MspR9I	CCNGG	5 cut(s)	17, 371, 379, 416, 489
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	3 cut(s)	17, 371, 416
MvnI	CGCG	3 cut(s)	66, 129, 240
MwoI	GCNNNNNNNGC	2 cut(s)	115, 752
NarI	GGCGCC	2 cut(s)	109, 302
NciI	CCSGG	2 cut(s)	379, 489
NcoI	CCATGG	2 cut(s)	102, 249
NdeII	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
NlaIII	CATG	4 cut(s)	106, 253, 424, 595
NlaIV	GGNNCC	2 cut(s)	110, 303
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 63
PfeI	GAWTC	1 cut(s)	689
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	414
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	2 cut(s)	112, 305
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	283
Psp6I	CCWGG	3 cut(s)	15, 369, 414
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	3 cut(s)	15, 369, 414
PspN4I	GGNNCC	2 cut(s)	110, 303
PstNI	CAGNNNCTG	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	3 cut(s)	621, 681, 776
RsaNI	GTAC	3 cut(s)	620, 680, 775
RseI	CAYNNNNRTG	2 cut(s)	596, 614
SaqAI	TTAA	3 cut(s)	146, 429, 666
Sau3AI	GATC	6 cut(s)	36, 132, 408, 603, 638, 670
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	5 cut(s)	17, 371, 379, 416, 489
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	693
SfoI	GGCGCC	2 cut(s)	110, 303
SmiMI	CAYNNNNRTG	2 cut(s)	596, 614
SmlI	CTYRAG	2 cut(s)	119, 428
SmoI	CTYRAG	2 cut(s)	119, 428
Sse9I	AATT	3 cut(s)	142, 523, 756
SsiI	CCGC	3 cut(s)	28, 64, 238
SspDI	GGCGCC	2 cut(s)	108, 301
SspMI	CTAG	3 cut(s)	546, 560, 726
StyD4I	CCNGG	5 cut(s)	15, 369, 377, 414, 487
StyI	CCWWGG	2 cut(s)	102, 249
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	3 cut(s)	216, 285, 780
TaqI	TCGA	2 cut(s)	179, 750
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	142, 523, 756
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	3 cut(s)	146, 429, 666
Tru9I	TTAA	3 cut(s)	146, 429, 666
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	641, 660, 722
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	3 cut(s)	546, 560, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.