Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011115

Physical Location & Seq

Genomic Coordinates Reverse (-)

31299073 .. 31305676

Gene Structure 6604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACAAGAACATCCTGGGACTTCTCCGCCTTCGGATCAAGCGAGGTATCAACCTCGCCGTCCGCGACTATGTCACCAGCGACCCTTACATCGTCGTAACCATGGGGCGCCACAGGCTCAAGACTCGCGTGATCAAGAAGAATTTAAACCCGGAGTGGAACGAGGAACTCACTCTTTCGATGACCGACATCAACGAGCCTATCCTTCTCAACGTCTACGACAAAGACCATATCACCCACGACGACCCCATGGGCGATGCAGTGGTTGACATCAAGCCCTACGTCGAGTGCCTGAAACTGGCGGCGGAGTTGGAGAAGCTCCCAGATGGGTGTGCGTTGAAGAAAGTCCAGCCCAGCAGGAACAACTGCCTGGCCACCGAGAGCTGTTGCACTTGGCACGAGGGGAAGATCATCCAGGACATGAGACTTAAGCTGAGGAATGTGGAGTGTGGGGAAGTTGTAGTCCAGATTGAGTGGATTGATGTTCCGGGTTCTAAAGGTTTAGCAAATGTTCAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

174

Amino Acids

19.67

Weight (kDa)

6.43

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	7 - 93	2.2e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70790 AT1G70790 AT1G70790 AT1G70790
fragaria_vesca	FvH4_4g32810 FvH4_4g32811
malus_domestica	MD13G1022400.v1.1 MD16G1023600.v1.1
prunus_persica	Prupe.1G329300_v2.0.a1
pyrus_communis	pycom13g02090
rosa_chinensis	RchiOBHm_Chr4g0441811
rosa_laevigata	RLG00000006064
rosa_multiflora	Rmu_sc0008316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382630
rosa_rugosa	Rorug04G0336500
rosa_samantha	Rh4AG387900 Rh4BG401600 Rh4CG416600 Rh4DG394900
rosa_wichuraiana	Rw4G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	2 cut(s)	66, 129
AciI	CCGC	4 cut(s)	28, 64, 302, 305
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	3 cut(s)	15, 369, 414
AluBI	AGCT	3 cut(s)	319, 384, 433
AluI	AGCT	3 cut(s)	319, 384, 433
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	111
AsuC2I	CCSGG	2 cut(s)	152, 489
AsuHPI	GGTGA	2 cut(s)	67, 226
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	434
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	17, 371, 416
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	152, 489
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	520
BfoI	RGCGCY	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	5 cut(s)	17, 152, 371, 416, 489
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	5 cut(s)	17, 152, 371, 416, 489
BmsI	GCATC	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	152, 489
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	16, 102, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	17, 371, 416
BseDI	CCNNGG	3 cut(s)	16, 102, 249
BseGI	GGATG	2 cut(s)	12, 411
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	66, 129
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	152, 488
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	36, 132, 408
Bsp19I	CCATGG	2 cut(s)	102, 249
BspACI	CCGC	4 cut(s)	28, 64, 302, 305
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	66, 129
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	16, 102, 249
BssMI	GATC	3 cut(s)	36, 132, 408
BssNI	GRCGYC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	102, 249
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	3 cut(s)	17, 371, 416
BstACI	GRCGYC	1 cut(s)	109
BstAFI	CTTAAG	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	2 cut(s)	102, 249
BstF5I	GGATG	2 cut(s)	12, 411
BstFNI	CGCG	2 cut(s)	66, 129
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	39, 135, 411
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	3 cut(s)	36, 132, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	3 cut(s)	17, 371, 416
BstSCI	CCNGG	5 cut(s)	15, 150, 369, 414, 487
BstUI	CGCG	2 cut(s)	66, 129
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	2 cut(s)	102, 249
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	12, 411
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
CfoI	GCGC	1 cut(s)	111
CviAII	CATG	3 cut(s)	103, 250, 421
CviJI	RGCY	8 cut(s)	118, 199, 277, 319, 352, 374, 384, 433
CviKI_1	RGCY	8 cut(s)	118, 199, 277, 319, 352, 374, 384, 433
DdeI	CTNAG	1 cut(s)	434
DinI	GGCGCC	1 cut(s)	110
DpnI	GATC	3 cut(s)	38, 134, 410
DpnII	GATC	3 cut(s)	36, 132, 408
DraI	TTTAAA	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	2 cut(s)	17, 320
Eco130I	CCWWGG	2 cut(s)	102, 249
EcoRII	CCWGG	3 cut(s)	15, 369, 414
EcoT14I	CCWWGG	2 cut(s)	102, 249
EgeI	GGCGCC	1 cut(s)	110
EheI	GGCGCC	1 cut(s)	110
ErhI	CCWWGG	2 cut(s)	102, 249
FaeI	CATG	3 cut(s)	106, 253, 424
FaiI	YATR	5 cut(s)	72, 104, 231, 251, 422
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	102, 249, 420
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	520
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	2 cut(s)	152, 488
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	106, 253, 424
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	152, 488
HphI	GGTGA	2 cut(s)	67, 226
Hpy166II	GTNNAC	2 cut(s)	217, 268
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	3 cut(s)	121, 136, 466
Hpy8I	GTNNAC	2 cut(s)	217, 268
Hpy99I	CGWCG	3 cut(s)	98, 245, 287
HpyAV	CCTTC	2 cut(s)	41, 215
HpyCH4IV	ACGT	2 cut(s)	213, 282
HpyCH4V	TGCA	2 cut(s)	260, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	2 cut(s)	213, 282
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	106, 253, 424
HspAI	GCGC	1 cut(s)	109
KasI	GGCGCC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	36, 132, 408
LmnI	GCTCC	1 cut(s)	324
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	520
MaeII	ACGT	2 cut(s)	213, 282
MaeIII	GTNAC	2 cut(s)	73, 97
MalI	GATC	3 cut(s)	38, 134, 410
MboI	GATC	3 cut(s)	36, 132, 408
MboII	GAAGA	3 cut(s)	151, 352, 418
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	374
Mly113I	GGCGCC	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	38, 65, 157, 394, 429
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	146, 429
Msp20I	TGGCCA	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	2 cut(s)	152, 488
MspR9I	CCNGG	5 cut(s)	17, 152, 371, 416, 489
MvaI	CCWGG	3 cut(s)	17, 371, 416
MvnI	CGCG	2 cut(s)	66, 129
MwoI	GCNNNNNNNGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	109
NciI	CCSGG	2 cut(s)	152, 489
NcoI	CCATGG	2 cut(s)	102, 249
NdeII	GATC	3 cut(s)	36, 132, 408
NlaIII	CATG	3 cut(s)	106, 253, 424
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 63
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	3 cut(s)	15, 369, 414
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	3 cut(s)	15, 369, 414
PspN4I	GGNNCC	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	146, 429
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	36, 132, 408
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	5 cut(s)	17, 152, 371, 416, 489
SetI	ASST	9 cut(s)	49, 57, 216, 285, 321, 386, 435, 502, 519
SfaNI	GCATC	1 cut(s)	247
SfoI	GGCGCC	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	119, 428
SmoI	CTYRAG	2 cut(s)	119, 428
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	4 cut(s)	28, 64, 302, 305
SspDI	GGCGCC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	520
StyD4I	CCNGG	5 cut(s)	15, 150, 369, 414, 487
StyI	CCWWGG	2 cut(s)	102, 249
TaiI	ACGT	2 cut(s)	216, 285
TaqI	TCGA	2 cut(s)	179, 285
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	146, 429
Tru9I	TTAA	2 cut(s)	146, 429
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.