Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011115

Physical Location & Seq

Genomic Coordinates Forward (+)

1611925 .. 1612437

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1022400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAACAACATCCTCGGACTTCTCAGGCTTCGTATCAAGCGAGGAGTCAACCTTGCCATCCGCGACGTCAAGACGAGTGATCCCTACCTGACGCTCACCATGGGATCGCAGAAACTGAAGACGAAAGTGATAAAAAGGAACTGCAACCCTGAGTGGAACGAGGAGCTGACGCTTTCGATCACCAACTTGGAAGAACCGATCCATCTACAAGTGTACGACAAAGACACGTTAACCGTGGACGACAAGATGGGTGATGCAGACATAGACATCAAACCCTACGTCGAGTGTCTGAAGATGGGGTTAGACGCGGACGCCCTCCCGAAGGGCTGCGCCCTCAAGAAAGTTCAGCCCAACAGGACCAACTGCCTCTCCACCGAGAGCTGTTGCGTTTGGGAAAATGGCAAGATTGTTCAGGACATGATTCTCAAACTGCGAAACGTCGAGTGTGGCGAAATCGTGCTGCAGATTGAGTGGATCAACCTTCCTGGTTCTAAAGGTTTAGCAGGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

171

Amino Acids

19.07

Weight (kDa)

6.59

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 92	3.1e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70790 AT1G70790 AT1G70790 AT1G70790
fragaria_vesca	FvH4_4g32810 FvH4_4g32811
malus_domestica	MD13G1022400.v1.1 MD16G1023600.v1.1
prunus_persica	Prupe.1G329300_v2.0.a1
pyrus_communis	pycom13g02090
rosa_chinensis	RchiOBHm_Chr4g0441811
rosa_laevigata	RLG00000006064
rosa_multiflora	Rmu_sc0008316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382630
rosa_rugosa	Rorug04G0336500
rosa_samantha	Rh4AG387900 Rh4BG401600 Rh4CG416600 Rh4DG394900
rosa_wichuraiana	Rw4G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccII	CGCG	2 cut(s)	63, 308
AciI	CCGC	2 cut(s)	61, 308
AclWI	GGATC	4 cut(s)	74, 112, 193, 482
AcuI	CTGAAG	2 cut(s)	137, 311
AcyI	GRCGYC	2 cut(s)	66, 312
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	2 cut(s)	166, 381
AluI	AGCT	2 cut(s)	166, 381
AlwI	GGATC	4 cut(s)	74, 112, 193, 482
AlwNI	CAGNNNCTG	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	327, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	88, 172, 263
AvaII	GGWCC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	314, 447
BccI	CCATC	4 cut(s)	65, 210, 241, 289
BciT130I	CCWGG	1 cut(s)	486
BfaI	CTAG	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	461
BisI	GCNGC	2 cut(s)	328, 461
BlsI	GCNGC	2 cut(s)	329, 462
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	2 cut(s)	66, 312
BsaJI	CCNNGG	3 cut(s)	13, 99, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	13, 99, 234
BseGI	GGATG	2 cut(s)	9, 57
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	37, 141
BseRI	GAGGAG	2 cut(s)	57, 176
BseXI	GCAGC	2 cut(s)	314, 447
Bsh1236I	CGCG	2 cut(s)	63, 308
BslI	CCNNNNNNNGG	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	79, 104, 177, 198, 474
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	61, 308
BspCNI	CTCAG	2 cut(s)	36, 142
BspFNI	CGCG	2 cut(s)	63, 308
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	4 cut(s)	74, 112, 193, 482
BssECI	CCNNGG	3 cut(s)	13, 99, 234
BssMI	GATC	5 cut(s)	79, 104, 177, 198, 474
BssNI	GRCGYC	2 cut(s)	66, 312
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	2 cut(s)	66, 312
BstDEI	CTNAG	2 cut(s)	23, 150
BstDSI	CCRYGG	2 cut(s)	99, 234
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	9, 57
BstFNI	CGCG	2 cut(s)	63, 308
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	5 cut(s)	82, 107, 180, 201, 477
BstMBI	GATC	5 cut(s)	79, 104, 177, 198, 474
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	461
BstUI	CGCG	2 cut(s)	63, 308
BstV1I	GCAGC	2 cut(s)	314, 447
BstV2I	GAAGAC	1 cut(s)	125
BtgI	CCRYGG	2 cut(s)	99, 234
BtsCI	GGATG	2 cut(s)	9, 57
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	4 cut(s)	100, 178, 314, 320
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	100, 418
CviJI	RGCY	5 cut(s)	28, 166, 327, 349, 381
CviKI_1	RGCY	5 cut(s)	28, 166, 327, 349, 381
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	23, 150
DpnI	GATC	5 cut(s)	81, 106, 179, 200, 476
DpnII	GATC	5 cut(s)	79, 104, 177, 198, 474
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	137, 311
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	103, 421
FaiI	YATR	3 cut(s)	101, 263, 419
FatI	CATG	2 cut(s)	99, 417
Fnu4HI	GCNGC	2 cut(s)	328, 461
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	328, 461
FspBI	CTAG	1 cut(s)	511
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	328, 461
HgaI	GACGC	4 cut(s)	100, 178, 314, 320
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	2 cut(s)	66, 312
Hin1II	CATG	2 cut(s)	103, 421
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	2 cut(s)	49, 231
HindII	GTYRAC	2 cut(s)	49, 231
HinfI	GANTC	3 cut(s)	45, 421, 507
HpaI	GTTAAC	1 cut(s)	231
HphI	GGTGA	3 cut(s)	88, 172, 263
Hpy166II	GTNNAC	4 cut(s)	49, 214, 231, 238
Hpy188I	TCNGA	2 cut(s)	17, 291
Hpy188III	TCNNGA	4 cut(s)	70, 319, 337, 413
Hpy8I	GTNNAC	4 cut(s)	49, 214, 231, 238
Hpy99I	CGWCG	3 cut(s)	68, 284, 443
HpyAV	CCTTC	2 cut(s)	316, 491
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	4 cut(s)	66, 227, 279, 438
HpyCH4V	TGCA	3 cut(s)	144, 257, 463
HpyF3I	CTNAG	2 cut(s)	23, 150
HpySE526I	ACGT	4 cut(s)	66, 227, 279, 438
Hsp92I	GRCGYC	2 cut(s)	66, 312
Hsp92II	CATG	2 cut(s)	103, 421
HspAI	GCGC	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	79, 104, 177, 198, 474
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	10, 101, 162, 340, 398, 471, 489, 498
Lsp1109I	GCAGC	2 cut(s)	314, 447
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	4 cut(s)	66, 227, 279, 438
MalI	GATC	5 cut(s)	81, 106, 179, 200, 476
MboI	GATC	5 cut(s)	79, 104, 177, 198, 474
MboII	GAAGA	3 cut(s)	130, 203, 304
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	23, 35, 154, 326, 344, 377
MseI	TTAA	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	2 cut(s)	63, 308
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	5 cut(s)	79, 104, 177, 198, 474
NlaIII	CATG	2 cut(s)	103, 421
PcsI	WCGNNNNNNNCGW	2 cut(s)	37, 447
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	329, 462
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	328, 461
Sau3AI	GATC	5 cut(s)	79, 104, 177, 198, 474
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	461
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SsiI	CCGC	2 cut(s)	61, 308
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	4 cut(s)	69, 230, 282, 441
TaqI	TCGA	3 cut(s)	176, 282, 441
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	2 cut(s)	327, 460
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	511
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.