Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011115

Physical Location & Seq

Genomic Coordinates Reverse (-)

66176799 .. 66178969

Gene Structure 2171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG416600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAACAACAACGTCCTGGGACTTCTCCGCCTTCGGATCAAGCAAGGAATCAACCTCGCCATCCGCGACGTTACCAGGACCAGCGACCCTTACATCATCGTGACCATGGGGGGCCACAAACTGAAGACTCGCGTGGTGAAGAAGAACTTGAATCCCGTGTGGAACGAGGAACTCACTCTTTCGATTTCCAACATTAACGAGCCTATCGTTTTCAACGTTTACGACAAAGACCATATCACCGGCGACGACCCTATGGGCGATGCAGTGGTTGACATCAAGCCCTACATGGAGTGCCTGAAACTGGCGGCGGATTTGGAGAAGCTCCCAGATGGGTGTGCGGTGAAGAAGGTCCAGCCCAGCAGGGACAACTGCCTGTCCAAAGAGAGCTGTTGCACTTGGCACGAGGGCAAAATCGTCCAGGACATGATTCTTAAGCTGCGGAATGTGGAGTGTGGGGAAATTGTAATCCAGATTGAGTGGATTGATATTCCGGGTTCTAAAGGTTTAGCAGCTGTTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

5.94

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	7 - 94	3.5e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70790 AT1G70790 AT1G70790 AT1G70790
fragaria_vesca	FvH4_4g32810 FvH4_4g32811
malus_domestica	MD13G1022400.v1.1 MD16G1023600.v1.1
prunus_persica	Prupe.1G329300_v2.0.a1
pyrus_communis	pycom13g02090
rosa_chinensis	RchiOBHm_Chr4g0441811
rosa_laevigata	RLG00000006064
rosa_multiflora	Rmu_sc0008316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382630
rosa_rugosa	Rorug04G0336500
rosa_samantha	Rh4AG387900 Rh4BG401600 Rh4CG416600 Rh4DG394900
rosa_wichuraiana	Rw4G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	66, 132
AciI	CCGC	6 cut(s)	28, 64, 305, 308, 338, 439
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	151, 214
AjnI	CCWGG	3 cut(s)	15, 74, 417
AluBI	AGCT	4 cut(s)	322, 387, 436, 512
AluI	AGCT	4 cut(s)	322, 387, 436, 512
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	436, 509
AspS9I	GGNCC	3 cut(s)	78, 112, 349
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	3 cut(s)	148, 229, 352
AvaII	GGWCC	2 cut(s)	78, 349
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	423, 521
BccI	CCATC	2 cut(s)	68, 323
BciT130I	CCWGG	3 cut(s)	17, 76, 419
BcnI	CCSGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	523
BfrI	CTTAAG	1 cut(s)	431
BisI	GCNGC	3 cut(s)	306, 437, 510
BlsI	GCNGC	3 cut(s)	307, 438, 511
Bme1390I	CCNGG	4 cut(s)	17, 76, 419, 492
Bme18I	GGWCC	2 cut(s)	78, 349
BmgT120I	GGNCC	3 cut(s)	78, 112, 349
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	4 cut(s)	17, 76, 419, 492
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	16, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	3 cut(s)	17, 76, 419
BseDI	CCNNGG	2 cut(s)	16, 105
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	423, 521
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	66, 132
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	240, 491
BslFI	GGGAC	2 cut(s)	33, 377
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	33, 377
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	6 cut(s)	28, 64, 305, 308, 338, 439
BspANI	GGCC	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	66, 132
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	44
BspTI	CTTAAG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	16, 105
BssMI	GATC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	3 cut(s)	17, 76, 419
BstAFI	CTTAAG	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	2 cut(s)	66, 132
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstNI	CCWGG	3 cut(s)	17, 76, 419
BstSCI	CCNGG	4 cut(s)	15, 74, 417, 490
BstUI	CGCG	2 cut(s)	66, 132
BstV1I	GCAGC	2 cut(s)	423, 521
BstV2I	GAAGAC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	78, 112, 349
CviAII	CATG	3 cut(s)	106, 286, 424
CviJI	RGCY	8 cut(s)	114, 202, 280, 322, 355, 387, 436, 512
CviKI_1	RGCY	8 cut(s)	114, 202, 280, 322, 355, 387, 436, 512
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EciI	GGCGGA	2 cut(s)	17, 323
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	78, 349
Eco57I	CTGAAG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	15, 74, 417
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	109, 289, 427
FaiI	YATR	5 cut(s)	107, 234, 254, 287, 425
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	2 cut(s)	33, 377
FatI	CATG	3 cut(s)	105, 285, 423
Fnu4HI	GCNGC	3 cut(s)	306, 437, 510
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	306, 437, 510
FspBI	CTAG	1 cut(s)	523
GluI	GCNGC	3 cut(s)	306, 437, 510
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	240, 491
Hin1II	CATG	3 cut(s)	109, 289, 427
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	48, 127, 151, 427
HpaII	CCGG	2 cut(s)	240, 491
HphI	GGTGA	3 cut(s)	148, 229, 352
Hpy166II	GTNNAC	2 cut(s)	220, 271
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	100, 469
Hpy8I	GTNNAC	2 cut(s)	220, 271
Hpy99I	CGWCG	2 cut(s)	71, 248
HpyAV	CCTTC	2 cut(s)	41, 340
HpyCH4IV	ACGT	3 cut(s)	12, 69, 216
HpyCH4V	TGCA	2 cut(s)	263, 393
HpySE526I	ACGT	3 cut(s)	12, 69, 216
Hsp92II	CATG	3 cut(s)	109, 289, 427
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	2 cut(s)	423, 521
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	523
MaeII	ACGT	3 cut(s)	12, 69, 216
MaeIII	GTNAC	2 cut(s)	70, 100
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	4 cut(s)	136, 151, 154, 355
MluCI	AATT	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	65, 160, 397, 511
MseI	TTAA	2 cut(s)	195, 432
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	512
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	2 cut(s)	240, 491
MspR9I	CCNGG	4 cut(s)	17, 76, 419, 492
MvaI	CCWGG	3 cut(s)	17, 76, 419
MvnI	CGCG	2 cut(s)	66, 132
NciI	CCSGG	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	3 cut(s)	109, 289, 427
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 204, 213
PfeI	GAWTC	3 cut(s)	48, 151, 427
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	3 cut(s)	307, 438, 511
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	15, 74, 417
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	3 cut(s)	15, 74, 417
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	3 cut(s)	78, 112, 349
PvuII	CAGCTG	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	195, 432
SatI	GCNGC	3 cut(s)	306, 437, 510
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	3 cut(s)	78, 112, 349
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	4 cut(s)	17, 76, 419, 492
SfaNI	GCATC	1 cut(s)	250
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	2 cut(s)	78, 349
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	6 cut(s)	28, 64, 305, 308, 338, 439
SspMI	CTAG	1 cut(s)	523
StyD4I	CCNGG	4 cut(s)	15, 74, 417, 490
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	3 cut(s)	15, 72, 219
TaqI	TCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	459
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	48, 151, 427
Tru1I	TTAA	2 cut(s)	195, 432
Tru9I	TTAA	2 cut(s)	195, 432
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	436, 509
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	270
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	78, 349
XspI	CTAG	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.