Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011115

Physical Location & Seq

Genomic Coordinates Reverse (-)

31271762 .. 31272845

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAACAATATCCTGGGACTTCTGAGGCTTCGGATCAAGCGAGGTATCAACCTTGCTGTTCGTGATACCAAGACCAGTGATCCTTACGTGGTGGTCACCATGGGTTCCCAGAAACTGAAAACAAAAGTGATAAAAAAGAATTGCAACCCTCAGTGGAACGAGGAGCTGACGCTTTCCATTACAAATTTGGAAGAAAACATCCATCTAGAAGTGTACGACAAGGACACGTTAACTGTGGACGACAAGATGGGAGATGCAGACATAGACATCAAACCCTACGTTGAGTGCCTCAAGATGGGATTGGACGTCCTCCCGAAGGGCTGCGCCGTCAAGAAAGTTCAGCCCAACAGGACCAACTGCCTGTCCTCTGAGAGCTGCTGCGTTTGGGAAAATGGCAAAATTGTTCAGGACATGATTCTCAAACTGAACAACGTCGAGTGCGGCGAAATTGTGCTTCAAATTGAGTGGATCCACCTTCCTGGTTCTAAAGGTTTAGCAGGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

169

Amino Acids

18.82

Weight (kDa)

6.72

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70790 AT1G70790 AT1G70790 AT1G70790
fragaria_vesca	FvH4_4g32810 FvH4_4g32811
malus_domestica	MD13G1022400.v1.1 MD16G1023600.v1.1
prunus_persica	Prupe.1G329300_v2.0.a1
pyrus_communis	pycom13g02090
rosa_chinensis	RchiOBHm_Chr4g0441811
rosa_laevigata	RLG00000006064
rosa_multiflora	Rmu_sc0008316.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382630
rosa_rugosa	Rorug04G0336500
rosa_samantha	Rh4AG387900 Rh4BG401600 Rh4CG416600 Rh4DG394900
rosa_wichuraiana	Rw4G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
AatII	GACGTC	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	488
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	4 cut(s)	41, 74, 463, 476
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	295, 316
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	12, 478
AluBI	AGCT	2 cut(s)	166, 375
AluI	AGCT	2 cut(s)	166, 375
AlwI	GGATC	4 cut(s)	41, 74, 463, 476
AlwNI	CAGNNNCTG	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	321, 375, 378
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	468
BbvI	GCAGC	3 cut(s)	308, 362, 365
BccI	CCATC	3 cut(s)	210, 241, 289
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	14, 480
BfaI	CTAG	2 cut(s)	206, 505
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	4 cut(s)	322, 376, 379, 442
BlsI	GCNGC	4 cut(s)	323, 377, 380, 443
Bme1390I	CCNGG	2 cut(s)	14, 480
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	106, 470
BmrFI	CCNGG	2 cut(s)	14, 480
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	13, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 316
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	14, 480
BseDI	CCNNGG	2 cut(s)	13, 99
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	295, 316
BseMII	CTCAG	3 cut(s)	14, 164, 360
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	308, 362, 365
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	295, 316
BsmFI	GGGAC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	33, 79, 468
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	15, 163, 361
BspLI	GGNNCC	2 cut(s)	106, 470
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	4 cut(s)	41, 74, 463, 476
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	13, 99
BssMI	GATC	3 cut(s)	33, 79, 468
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	14, 480
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	23, 150, 369
BstDSI	CCRYGG	1 cut(s)	99
BstEII	GGTNACC	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	3 cut(s)	36, 82, 471
BstMBI	GATC	3 cut(s)	33, 79, 468
BstNI	CCWGG	2 cut(s)	14, 480
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	12, 478
BstV1I	GCAGC	3 cut(s)	308, 362, 365
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	82, 158
BveI	ACCTGC	1 cut(s)	488
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	351
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	2 cut(s)	100, 412
CviJI	RGCY	5 cut(s)	28, 166, 321, 343, 375
CviKI_1	RGCY	5 cut(s)	28, 166, 321, 343, 375
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	23, 150, 369
DpnI	GATC	3 cut(s)	35, 81, 470
DpnII	GATC	3 cut(s)	33, 79, 468
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	12, 478
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	103, 415
FaiI	YATR	3 cut(s)	101, 263, 413
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	2 cut(s)	99, 411
Fnu4HI	GCNGC	4 cut(s)	322, 376, 379, 442
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	322, 376, 379, 442
FspBI	CTAG	2 cut(s)	206, 505
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	4 cut(s)	322, 376, 379, 442
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	103, 415
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	415
HpaI	GTTAAC	1 cut(s)	231
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	214, 231, 238
Hpy188I	TCNGA	3 cut(s)	24, 33, 370
Hpy188III	TCNNGA	6 cut(s)	62, 206, 292, 313, 331, 407
Hpy8I	GTNNAC	3 cut(s)	214, 231, 238
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	310, 485
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	5 cut(s)	87, 227, 279, 306, 432
HpyCH4V	TGCA	2 cut(s)	144, 257
HpyF3I	CTNAG	3 cut(s)	23, 150, 369
HpySE526I	ACGT	5 cut(s)	87, 227, 279, 306, 432
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	103, 415
HspAI	GCGC	1 cut(s)	324
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	33, 79, 468
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	9 cut(s)	26, 88, 122, 334, 374, 392, 465, 483, 492
Lsp1109I	GCAGC	3 cut(s)	308, 362, 365
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	206, 505
MaeII	ACGT	5 cut(s)	87, 227, 279, 306, 432
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	35, 81, 470
MboI	GATC	3 cut(s)	33, 79, 468
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	1 cut(s)	468
MluCI	AATT	5 cut(s)	139, 184, 399, 447, 459
MnlI	CCTC	7 cut(s)	18, 35, 154, 159, 299, 320, 376
MseI	TTAA	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	14, 480
MvaI	CCWGG	2 cut(s)	14, 480
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	33, 79, 468
NlaIII	CATG	2 cut(s)	103, 415
NlaIV	GGNNCC	2 cut(s)	106, 470
NmuCI	GTSAC	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	2 cut(s)	37, 441
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	323, 377, 380, 443
Ppu21I	YACGTR	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	12, 478
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	2 cut(s)	12, 478
PspN4I	GGNNCC	2 cut(s)	106, 470
PspPI	GGNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	4 cut(s)	322, 376, 379, 442
Sau3AI	GATC	3 cut(s)	33, 79, 468
Sau96I	GGNCC	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	14, 480
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	5 cut(s)	139, 184, 399, 447, 459
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	2 cut(s)	206, 505
StyD4I	CCNGG	2 cut(s)	12, 478
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	5 cut(s)	90, 230, 282, 309, 435
TaqI	TCGA	1 cut(s)	435
TasI	AATT	5 cut(s)	139, 184, 399, 447, 459
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	82, 158
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	321, 375, 378
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	82, 158
VpaK11BI	GGWCC	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XspI	CTAG	2 cut(s)	206, 505
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.