FvH4_4g35180

Belongs to the peptidase M10A family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
32571927 .. 32574376
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35180.t2

Sequence Viewer

Length: 1149 bp
ATGAAGTTCTCCTTTCACCTCTTCACCATCGCCATCTGCCTCACACTTTCACACGCCTCCGCTCGCTTCTTCCCTAACATAACCAACATACCACCGTGGCTCCTCCCTAACGTCACCGTCAATACCACACCCACCACCGCTTGGGACGCCTTTCAGAAGTTCGGTAACTGCCGCCCGGGTGAGAAAGTCGACGGTTTGGCCAAGCTAAAGAAGTACTTCAACTACTTCGGCTACATTCCCAACCTCCCTACCAACTGCACAGACGAATTTGACGATGAGCTTCAGTCGGCTCTCAAGACCTACCAGAAGAACTTCAACCTCAACGTCACCGGCGAGCTCGATGACCAGACCATCAACCACCTCGTGCGTCCCCGCTGCGGCAACCCCGACATCGTCAACGGCACGACCACAATGCACTCCGGCAAGCCGGTGACGTTTAACAACTCCAAGCTCCACACGGTCGGTCACTACTCTTTCTTCCCTGGAACTCCGGTCTGGCCAACAGGCCGGCGTGACTTGACGTTCGCGTTCTTGCCGGACAACGAGCTTTCAGACGAGGCAAAATCCGTGTTCGTCGGCGCCTTTCAAAAATGGTCGACGGTCATTCCTATGACCTTCACCGAGACGACTTCGTACTACTCGGCCGACATTAAGATCGGCTTCTACGTCGGCGACCACGGCGATGGCGAGGCCTTCGACGGCGTTCTGGGGACTCTGGCGCACGCGTTCTCACCCCCGAGCGGGTTGTTCCACCTCGACGGCGACGAGAACTGGGTCATCGGAGGTGACATCAGCACGTCGACGGTGACGTCAGCCATCGACTTGGAGTCAGTAGCGGTTCATGAGATAGGGCACTTATTAGGGTTGGGGCACTCGTCGGTAGAGGAGTCGATCATGTACCCTACCATCACGTCGAAGACAAAGAAAGTTGATCTTGCAAACGACGACGTTGAGGGGATTCAGTCGCTCTACGGCGTCAACCCCAGTTACGACGGCACCACTACGTCGTCTACGCCGTCCACTCAGGCAAGGGAAACGTCGGCAGGTAGGGACCGCAGGGCTTCACGGTGGGGCGTCGGAGGAGGGCTTGTGGCCGTTGGATTAGTGCTGCTAATCTGGTCTAGACCCTTGTGCAAGTCACAGAGCTAG

Protein Analysis

383

Amino Acids

41.78

Weight (kDa)

5.61

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 66 - 121 1.3e-11 Putative peptidoglycan binding domain
Peptidase_M10 PF00413 170 - 325 1e-48 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011313)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 808
AatII GACGTC 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 1034
AccB1I GGYRCC 2 cut(s) 578, 995
AccB7I CCANNNNNTGG 1 cut(s) 141
AccBSI CCGCTC 2 cut(s) 62, 741
AccI GTMKAC 4 cut(s) 189, 596, 800, 1010
AccII CGCG 2 cut(s) 527, 725
AciI CCGC 8 cut(s) 60, 138, 172, 373, 378, 741, 836, 1054
AcoI YGGCCR 4 cut(s) 198, 497, 642, 1092
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 5 cut(s) 147, 579, 809, 975, 1074
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 3 cut(s) 215, 635, 899
AfiI CCNNNNNNNGG 4 cut(s) 141, 377, 740, 741
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 3 cut(s) 220, 316, 587
AhdI GACNNNNNGTC 1 cut(s) 826
AjiI CACGTC 2 cut(s) 798, 912
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 6 cut(s) 205, 280, 337, 451, 547, 1146
AluI AGCT 6 cut(s) 205, 280, 337, 451, 547, 1146
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 617
Ama87I CYCGRG 2 cut(s) 175, 736
AoxI GGCC 6 cut(s) 198, 497, 505, 642, 690, 1092
ApeKI GCWGC 2 cut(s) 375, 1108
ApoI RAATTY 1 cut(s) 266
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
Asp700I GAANNNNTTC 2 cut(s) 215, 311
AspLEI GCGC 2 cut(s) 581, 721
AspS9I GGNCC 1 cut(s) 1051
AsuC2I CCSGG 2 cut(s) 176, 177
AvaI CYCGRG 2 cut(s) 175, 736
AvaII GGWCC 1 cut(s) 1051
BaeGI GKGCMC 2 cut(s) 855, 873
BalI TGGCCA 2 cut(s) 200, 499
BanI GGYRCC 2 cut(s) 578, 995
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 362, 1095
BccI CCATC 6 cut(s) 35, 41, 359, 677, 824, 914
BceAI ACGGC 8 cut(s) 415, 694, 715, 775, 988, 1000, 1009, 1079
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 2 cut(s) 176, 177
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 1122, 1147
BfoI RGCGCY 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 1034
BisI GCNGC 4 cut(s) 172, 376, 379, 1109
BlsI GCNGC 4 cut(s) 173, 377, 380, 1110
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 176, 177, 483
Bme18I GGWCC 1 cut(s) 1051
BmeRI GACNNNNNGTC 1 cut(s) 826
BmeT110I CYCGRG 2 cut(s) 175, 736
BmgBI CACGTC 2 cut(s) 798, 912
BmgT120I GGNCC 1 cut(s) 1051
BmiI GGNNCC 4 cut(s) 101, 580, 997, 1052
BmrFI CCNGG 3 cut(s) 176, 177, 483
BmrI ACTGGG 2 cut(s) 781, 978
BmuI ACTGGG 2 cut(s) 781, 978
BpiI GAAGAC 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 176, 177
BsaHI GRCGYC 5 cut(s) 147, 579, 809, 975, 1074
BsaJI CCNNGG 4 cut(s) 95, 175, 481, 676
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 1074, 1104
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 377, 740, 741
Bse118I RCCGGY 3 cut(s) 329, 427, 507
Bse1I ACTGG 2 cut(s) 776, 984
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 4 cut(s) 95, 175, 481, 676
BseLI CCNNNNNNNGG 4 cut(s) 141, 377, 740, 741
BseMII CTCAG 1 cut(s) 1037
BseNI ACTGG 2 cut(s) 776, 984
BseRI GAGGAG 3 cut(s) 92, 899, 1095
BseSI GKGCMC 2 cut(s) 855, 873
BseX3I CGGCCG 1 cut(s) 642
BseXI GCAGC 2 cut(s) 362, 1095
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 2 cut(s) 527, 725
Bsh1285I CGRYCG 2 cut(s) 462, 645
BshFI GGCC 6 cut(s) 200, 499, 507, 644, 692, 1094
BshNI GGYRCC 2 cut(s) 578, 995
BsiEI CGRYCG 2 cut(s) 462, 645
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 175, 736
BsiSI CCGG 7 cut(s) 176, 330, 420, 428, 491, 508, 536
BslFI GGGAC 4 cut(s) 158, 354, 724, 1064
BslI CCNNNNNNNGG 4 cut(s) 141, 377, 740, 741
BsmAI GTCTC 1 cut(s) 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 4 cut(s) 158, 354, 724, 1064
BsnI GGCC 6 cut(s) 200, 499, 507, 644, 692, 1094
BsoBI CYCGRG 2 cut(s) 175, 736
Bsp1286I GDGCHC 3 cut(s) 339, 855, 873
Bsp143I GATC 3 cut(s) 654, 891, 931
BspACI CCGC 8 cut(s) 60, 138, 172, 373, 378, 741, 836, 1054
BspANI GGCC 6 cut(s) 200, 499, 507, 644, 692, 1094
BspCNI CTCAG 1 cut(s) 1036
BspFNI CGCG 2 cut(s) 527, 725
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 4 cut(s) 101, 580, 997, 1052
BspMI ACCTGC 1 cut(s) 1034
BspT107I GGYRCC 2 cut(s) 578, 995
BsrBI CCGCTC 2 cut(s) 62, 741
BsrFI RCCGGY 3 cut(s) 329, 427, 507
BsrI ACTGG 2 cut(s) 776, 984
BssAI RCCGGY 3 cut(s) 329, 427, 507
BssECI CCNNGG 4 cut(s) 95, 175, 481, 676
BssMI GATC 3 cut(s) 654, 891, 931
BssNI GRCGYC 5 cut(s) 147, 579, 809, 975, 1074
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 7 cut(s) 96, 118, 194, 460, 601, 805, 1068
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 5 cut(s) 147, 579, 809, 975, 1074
BstC8I GCNNGC 5 cut(s) 64, 335, 425, 509, 723
BstDEI CTNAG 1 cut(s) 1023
BstDSI CCRYGG 2 cut(s) 95, 676
BstFNI CGCG 2 cut(s) 527, 725
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 581, 721
BstKTI GATC 3 cut(s) 657, 894, 934
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 3 cut(s) 654, 891, 931
BstMCI CGRYCG 2 cut(s) 462, 645
BstMWI GCNNNNNNNGC 2 cut(s) 146, 678
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 3 cut(s) 174, 175, 481
BstSLI GKGCMC 2 cut(s) 855, 873
BstUI CGCG 2 cut(s) 527, 725
BstV1I GCAGC 2 cut(s) 362, 1095
BstV2I GAAGAC 1 cut(s) 923
BstXI CCANNNNNNTGG 2 cut(s) 683, 823
BstZI CGGCCG 1 cut(s) 642
BsuRI GGCC 6 cut(s) 200, 499, 507, 644, 692, 1094
BtgI CCRYGG 2 cut(s) 95, 676
BtgZI GCGATG 2 cut(s) 13, 696
BtrI CACGTC 2 cut(s) 798, 912
BveI ACCTGC 1 cut(s) 1034
Cac8I GCNNGC 5 cut(s) 64, 335, 425, 509, 723
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 581, 721
Cfr10I RCCGGY 3 cut(s) 329, 427, 507
Cfr13I GGNCC 1 cut(s) 1051
Cfr9I CCCGGG 1 cut(s) 175
CseI GACGC 4 cut(s) 155, 356, 964, 1063
Csp6I GTAC 3 cut(s) 214, 634, 898
CviAII CATG 2 cut(s) 842, 895
CviQI GTAC 3 cut(s) 214, 634, 898
DdeI CTNAG 1 cut(s) 1023
DinI GGCGCC 1 cut(s) 580
DpnI GATC 3 cut(s) 656, 893, 933
DpnII GATC 3 cut(s) 654, 891, 931
DraIII CACNNNGTG 1 cut(s) 364
DrdI GACNNNNNNGTC 1 cut(s) 808
DriI GACNNNNNGTC 1 cut(s) 826
DseDI GACNNNNNNGTC 1 cut(s) 808
EaeI YGGCCR 4 cut(s) 198, 497, 642, 1092
EagI CGGCCG 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 337
EclXI CGGCCG 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 692
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 1051
Eco52I CGGCCG 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 175, 736
EcoICRI GAGCTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 580
EheI GGCGCC 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 2 cut(s) 845, 898
FaiI YATR 5 cut(s) 80, 89, 611, 843, 896
FalI AAGNNNNNCTT 7 cut(s) 28, 200, 232, 644, 676, 918, 950
FaqI GGGAC 4 cut(s) 158, 354, 724, 1064
FatI CATG 2 cut(s) 841, 894
FauI CCCGC 2 cut(s) 380, 734
FblI GTMKAC 4 cut(s) 189, 596, 800, 1010
Fnu4HI GCNGC 4 cut(s) 172, 376, 379, 1109
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 4 cut(s) 172, 376, 379, 1109
FspBI CTAG 2 cut(s) 1122, 1147
GlaI GCGC 2 cut(s) 580, 720
GluI GCNGC 4 cut(s) 172, 376, 379, 1109
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 6 cut(s) 200, 499, 507, 644, 692, 1094
HapII CCGG 7 cut(s) 176, 330, 420, 428, 491, 508, 536
HgaI GACGC 4 cut(s) 155, 356, 964, 1063
HhaI GCGC 2 cut(s) 581, 721
Hin1I GRCGYC 5 cut(s) 147, 579, 809, 975, 1074
Hin1II CATG 2 cut(s) 845, 898
Hin6I GCGC 2 cut(s) 579, 719
HinP1I GCGC 2 cut(s) 579, 719
HincII GTYRAC 5 cut(s) 190, 397, 597, 801, 979
HindII GTYRAC 5 cut(s) 190, 397, 597, 801, 979
HinfI GANTC 4 cut(s) 712, 827, 887, 958
HpaII CCGG 7 cut(s) 176, 330, 420, 428, 491, 508, 536
Hpy166II GTNNAC 7 cut(s) 190, 397, 597, 801, 979, 1011, 1020
Hpy188I TCNGA 4 cut(s) 156, 553, 782, 1079
Hpy188III TCNNGA 3 cut(s) 295, 842, 1122
Hpy8I GTNNAC 7 cut(s) 190, 397, 597, 801, 979, 1011, 1020
HpyAV CCTTC 2 cut(s) 625, 703
HpyCH4III ACNGT 7 cut(s) 96, 118, 194, 460, 601, 805, 1068
HpyCH4V TGCA 4 cut(s) 258, 415, 938, 1134
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 678
HpyF3I CTNAG 1 cut(s) 1023
Hsp92I GRCGYC 5 cut(s) 147, 579, 809, 975, 1074
Hsp92II CATG 2 cut(s) 845, 898
HspAI GCGC 2 cut(s) 579, 719
KasI GGCGCC 1 cut(s) 578
KroI GCCGGC 1 cut(s) 507
KroNI GCCGGC 1 cut(s) 509
Kzo9I GATC 3 cut(s) 654, 891, 931
LmnI GCTCC 2 cut(s) 105, 456
Lsp1109I GCAGC 2 cut(s) 362, 1095
MaeI CTAG 2 cut(s) 1122, 1147
MalI GATC 3 cut(s) 656, 893, 933
MbiI CCGCTC 2 cut(s) 62, 741
MboI GATC 3 cut(s) 654, 891, 931
MboII GAAGA 5 cut(s) 13, 61, 319, 469, 928
MhlI GDGCHC 3 cut(s) 339, 855, 873
MlsI TGGCCA 2 cut(s) 200, 499
MluCI AATT 1 cut(s) 266
MluI ACGCGT 1 cut(s) 723
MluNI TGGCCA 2 cut(s) 200, 499
Mly113I GGCGCC 1 cut(s) 579
MlyI GAGTC 3 cut(s) 706, 836, 896
MmeI TCCRAC 2 cut(s) 1057, 1078
Mox20I TGGCCA 2 cut(s) 200, 499
MroNI GCCGGC 1 cut(s) 507
MroXI GAANNNNTTC 2 cut(s) 215, 311
MscI TGGCCA 2 cut(s) 200, 499
MseI TTAA 2 cut(s) 438, 651
MslI CAYNNNNRTG 2 cut(s) 608, 681
Msp20I TGGCCA 2 cut(s) 200, 499
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 7 cut(s) 176, 330, 420, 428, 491, 508, 536
MspR9I CCNGG 3 cut(s) 176, 177, 483
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 2 cut(s) 527, 725
MwoI GCNNNNNNNGC 2 cut(s) 146, 678
NaeI GCCGGC 1 cut(s) 509
NarI GGCGCC 1 cut(s) 579
NciI CCSGG 2 cut(s) 176, 177
NdeII GATC 3 cut(s) 654, 891, 931
NgoMIV GCCGGC 1 cut(s) 507
NlaIII CATG 2 cut(s) 845, 898
NlaIV GGNNCC 4 cut(s) 101, 580, 997, 1052
NmeAIII GCCGAG 1 cut(s) 620
NmuCI GTSAC 8 cut(s) 112, 325, 430, 464, 512, 785, 805, 1137
PagI TCATGA 1 cut(s) 841
PceI AGGCCT 1 cut(s) 692
PcsI WCGNNNNNNNCGW 7 cut(s) 270, 330, 663, 684, 762, 806, 1013
PdiI GCCGGC 1 cut(s) 509
PdmI GAANNNNTTC 2 cut(s) 215, 311
PfeI GAWTC 1 cut(s) 958
PflFI GACNNNGTC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 4 cut(s) 173, 377, 380, 1110
PleI GAGTC 3 cut(s) 706, 835, 895
PluTI GGCGCC 1 cut(s) 582
PpsI GAGTC 3 cut(s) 706, 835, 895
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 101, 580, 997, 1052
PspPI GGNCC 1 cut(s) 1051
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 3 cut(s) 215, 635, 899
RsaNI GTAC 3 cut(s) 214, 634, 898
RseI CAYNNNNRTG 2 cut(s) 608, 681
SacI GAGCTC 1 cut(s) 339
SalI GTCGAC 3 cut(s) 188, 595, 799
SaqAI TTAA 2 cut(s) 438, 651
SatI GCNGC 4 cut(s) 172, 376, 379, 1109
Sau3AI GATC 3 cut(s) 654, 891, 931
Sau96I GGNCC 1 cut(s) 1051
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 3 cut(s) 706, 836, 896
ScrFI CCNGG 3 cut(s) 176, 177, 483
SduI GDGCHC 3 cut(s) 339, 855, 873
SfoI GGCGCC 1 cut(s) 580
SgrAI CRCCGGYG 1 cut(s) 329
SgrDI CGTCGACG 1 cut(s) 799
SinI GGWCC 1 cut(s) 1051
SmaI CCCGGG 1 cut(s) 177
SmiMI CAYNNNNRTG 2 cut(s) 608, 681
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 266
SseBI AGGCCT 1 cut(s) 692
SsiI CCGC 8 cut(s) 60, 138, 172, 373, 378, 741, 836, 1054
SspDI GGCGCC 1 cut(s) 578
SspMI CTAG 2 cut(s) 1122, 1147
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 692
StyD4I CCNGG 3 cut(s) 174, 175, 481
TaaI ACNGT 7 cut(s) 96, 118, 194, 460, 601, 805, 1068
TaqI TCGA 9 cut(s) 189, 339, 596, 696, 756, 800, 819, 890, 914
TaqII GACCGA 1 cut(s) 452
TasI AATT 1 cut(s) 266
TatI WGTACW 1 cut(s) 213
TauI GCSGC 2 cut(s) 174, 381
TfiI GAWTC 1 cut(s) 958
Tru1I TTAA 2 cut(s) 438, 651
Tru9I TTAA 2 cut(s) 438, 651
TseFI GTSAC 8 cut(s) 112, 325, 430, 464, 512, 785, 805, 1137
TseI GCWGC 2 cut(s) 375, 1108
Tsp45I GTSAC 8 cut(s) 112, 325, 430, 464, 512, 785, 805, 1137
TspDTI ATGAA 2 cut(s) 17, 830
TspGWI ACGGA 1 cut(s) 556
TspMI CCCGGG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 392
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 1051
XapI RAATTY 1 cut(s) 266
XbaI TCTAGA 1 cut(s) 1121
XmaI CCCGGG 1 cut(s) 175
XmiI GTMKAC 4 cut(s) 189, 596, 800, 1010
XmnI GAANNNNTTC 2 cut(s) 215, 311
XspI CTAG 2 cut(s) 1122, 1147
ZraI GACGTC 1 cut(s) 810
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.