Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037188.1

Orthogroup ID

OG0011313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 588

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

ctttcacacacctccgctcgcttcttccccaacataaccaacataccaccgtggctcctcccgaacgtcaccgtcccagccgcttctagcgcctgggacgccttccagaagtttgggaactgccgccccggcgagaaggtcgacggcttggccaagctcaagaagtatttcaactacttcggctacattcccaacctccctaccaacttcacagacgactttgacggtgagctcgagtcggctctcaagacctaccagaagaacttcaacctcaacgtcacaggcgaactagacgaacagactatcaaccacctcgtgcgtccccgctgcggcaaccctgacgtagtcaacggcacgaccaccatgaactccggcaagccgatgtcatttaacagctccaagctccacacggtcggccactactctttctttcccggaactccggtctggcccgagggccgccgtgatctgaccttcgcgttcttgccggacaacgagctttcagatgaggccaaggccgtcttcgttagcgccttccagaagtggtcgactgtcattccgatgaccttcaccgagacgacgtcgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016787 GO:0019538 GO:0031224 GO:0031225 GO:0032502 GO:0040007 GO:0042221 GO:0043170 GO:0044238 GO:0044425 GO:0044464 GO:0046686 GO:0048519 GO:0048580 GO:0048583 GO:0048589 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0080186 GO:0140096 GO:1900055 GO:1900056 GO:1901564 GO:1901700 GO:1905622 GO:2000024 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1 Peptidase_M10

Protein Analysis

195

Amino Acids

21.84

Weight (kDa)

6.09

Isoelectric Point (pI)

24.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70170
fragaria_vesca	FvH4_4g35180 FvH4_4g35180
malus_domestica	MD13G1085700.v1.1 MD16G1085000.v1.1
prunus_persica	Prupe.1G261000_v2.0.a1
pyrus_communis	pycom13g07410 pycom16g07350
rosa_chinensis	RchiOBHm_Chr4g0444791
rosa_laevigata	RLG00000005802
rosa_multiflora	Rmu_sc0000096.1_g000019 Rmu_sc0007130.1_g000003 Rmu_sc0037188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385280
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416500 Rh4BG427900 Rh4CG442700 Rh4DG423600
rosa_wichuraiana	Rw4G035690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	584
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	2 cut(s)	141, 548
AccII	CGCG	1 cut(s)	479
AciI	CCGC	6 cut(s)	15, 81, 124, 325, 330, 460
AcoI	YGGCCR	2 cut(s)	150, 415
AcyI	GRCGYC	2 cut(s)	99, 581
AdeI	CACNNNGTG	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	172, 268
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	5 cut(s)	157, 232, 396, 403, 499
AluI	AGCT	5 cut(s)	157, 232, 396, 403, 499
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	569
Ama87I	CYCGRG	2 cut(s)	233, 452
AoxI	GGCC	6 cut(s)	150, 415, 449, 457, 510, 516
ApeKI	GCWGC	1 cut(s)	327
Asp700I	GAANNNNTTC	2 cut(s)	167, 263
AspLEI	GCGC	2 cut(s)	92, 533
AspS9I	GGNCC	2 cut(s)	450, 457
AsuC2I	CCSGG	2 cut(s)	129, 435
AsuHPI	GGTGA	3 cut(s)	61, 239, 562
AvaI	CYCGRG	2 cut(s)	233, 452
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	4 cut(s)	160, 367, 447, 503
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	129, 435
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	2 cut(s)	87, 290
BfoI	RGCGCY	2 cut(s)	93, 534
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	5 cut(s)	81, 124, 328, 331, 460
BlsI	GCNGC	5 cut(s)	82, 125, 329, 332, 461
Bme1390I	CCNGG	3 cut(s)	94, 129, 435
BmeT110I	CYCGRG	2 cut(s)	233, 452
BmgT120I	GGNCC	2 cut(s)	450, 457
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	3 cut(s)	94, 129, 435
BpiI	GAAGAC	1 cut(s)	514
BpuEI	CTTGAG	2 cut(s)	143, 230
BpuMI	CCSGG	2 cut(s)	129, 435
BsaHI	GRCGYC	2 cut(s)	99, 581
BsaJI	CCNNGG	5 cut(s)	50, 93, 127, 453, 513
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	5 cut(s)	50, 93, 127, 453, 513
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	6 cut(s)	152, 417, 451, 459, 512, 518
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	2 cut(s)	233, 452
BsiSI	CCGG	5 cut(s)	129, 372, 435, 443, 488
BslFI	GGGAC	3 cut(s)	59, 110, 306
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	569
BsmBI	CGTCTC	1 cut(s)	569
BsmFI	GGGAC	3 cut(s)	59, 110, 306
BsnI	GGCC	6 cut(s)	152, 417, 451, 459, 512, 518
BsoBI	CYCGRG	2 cut(s)	233, 452
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	6 cut(s)	15, 81, 124, 325, 330, 460
BspANI	GGCC	6 cut(s)	152, 417, 451, 459, 512, 518
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	17
BssECI	CCNNGG	5 cut(s)	50, 93, 127, 453, 513
BssMI	GATC	1 cut(s)	466
BssNI	GRCGYC	2 cut(s)	99, 581
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	5 cut(s)	51, 73, 227, 412, 553
BstACI	GRCGYC	2 cut(s)	99, 581
BstC8I	GCNNGC	2 cut(s)	19, 377
BstDSI	CCRYGG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	479
BstH2I	RGCGCY	2 cut(s)	93, 534
BstHHI	GCGC	2 cut(s)	92, 533
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	1 cut(s)	466
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 129
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	3 cut(s)	92, 127, 433
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuRI	GGCC	6 cut(s)	152, 417, 451, 459, 512, 518
BtgI	CCRYGG	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	19, 377
CfoI	GCGC	2 cut(s)	92, 533
Cfr13I	GGNCC	2 cut(s)	450, 457
CseI	GACGC	2 cut(s)	107, 308
CviAII	CATG	1 cut(s)	364
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	150, 415
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	2 cut(s)	233, 452
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	1 cut(s)	367
FaiI	YATR	3 cut(s)	35, 44, 365
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	3 cut(s)	59, 110, 306
FatI	CATG	1 cut(s)	363
FauI	CCCGC	1 cut(s)	332
FblI	GTMKAC	2 cut(s)	141, 548
Fnu4HI	GCNGC	5 cut(s)	81, 124, 328, 331, 460
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	5 cut(s)	81, 124, 328, 331, 460
FspBI	CTAG	2 cut(s)	87, 290
GlaI	GCGC	2 cut(s)	91, 532
GluI	GCNGC	5 cut(s)	81, 124, 328, 331, 460
GsaI	CCCAGC	1 cut(s)	80
HaeII	RGCGCY	2 cut(s)	93, 534
HaeIII	GGCC	6 cut(s)	152, 417, 451, 459, 512, 518
HapII	CCGG	5 cut(s)	129, 372, 435, 443, 488
HgaI	GACGC	2 cut(s)	107, 308
HhaI	GCGC	2 cut(s)	92, 533
Hin1I	GRCGYC	2 cut(s)	99, 581
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	2 cut(s)	90, 531
HinP1I	GCGC	2 cut(s)	90, 531
HincII	GTYRAC	3 cut(s)	142, 349, 549
HindII	GTYRAC	3 cut(s)	142, 349, 549
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	5 cut(s)	129, 372, 435, 443, 488
HphI	GGTGA	3 cut(s)	61, 239, 562
Hpy166II	GTNNAC	3 cut(s)	142, 349, 549
Hpy188I	TCNGA	3 cut(s)	471, 505, 561
Hpy188III	TCNNGA	5 cut(s)	61, 106, 160, 247, 538
Hpy8I	GTNNAC	3 cut(s)	142, 349, 549
Hpy99I	CGWCG	3 cut(s)	146, 583, 586
HpyAV	CCTTC	5 cut(s)	112, 130, 484, 544, 577
HpyCH4III	ACNGT	5 cut(s)	51, 73, 227, 412, 553
HpyCH4IV	ACGT	4 cut(s)	66, 276, 342, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 129
HpySE526I	ACGT	4 cut(s)	66, 276, 342, 581
Hsp92I	GRCGYC	2 cut(s)	99, 581
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	2 cut(s)	90, 531
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	3 cut(s)	60, 401, 408
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	2 cut(s)	87, 290
MaeII	ACGT	4 cut(s)	66, 276, 342, 581
MaeIII	GTNAC	2 cut(s)	67, 277
MalI	GATC	1 cut(s)	468
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	1 cut(s)	466
MboII	GAAGA	3 cut(s)	16, 271, 514
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	152
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	7 cut(s)	22, 68, 206, 281, 323, 448, 502
Mox20I	TGGCCA	1 cut(s)	152
MroXI	GAANNNNTTC	2 cut(s)	167, 263
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	5 cut(s)	129, 372, 435, 443, 488
MspR9I	CCNGG	3 cut(s)	94, 129, 435
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 129
NciI	CCSGG	2 cut(s)	129, 435
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	67, 277
PaeR7I	CTCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 282
PdmI	GAANNNNTTC	2 cut(s)	167, 263
PflFI	GACNNNGTC	2 cut(s)	344, 580
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	82, 125, 329, 332, 461
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	450, 457
PspXI	VCTCGAGB	1 cut(s)	233
PsyI	GACNNNGTC	2 cut(s)	344, 580
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	2 cut(s)	140, 547
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	81, 124, 328, 331, 460
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	2 cut(s)	450, 457
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	94, 129, 435
SduI	GDGCHC	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	3 cut(s)	158, 233, 245
SmoI	CTYRAG	3 cut(s)	158, 233, 245
SsiI	CCGC	6 cut(s)	15, 81, 124, 325, 330, 460
SspMI	CTAG	2 cut(s)	87, 290
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	92, 127, 433
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	5 cut(s)	51, 73, 227, 412, 553
TaiI	ACGT	4 cut(s)	69, 279, 345, 584
TaqI	TCGA	3 cut(s)	141, 234, 548
TauI	GCSGC	4 cut(s)	83, 126, 333, 462
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	67, 277
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	2 cut(s)	67, 277
TspDTI	ATGAA	1 cut(s)	380
Tth111I	GACNNNGTC	2 cut(s)	344, 580
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	141, 548
XmnI	GAANNNNTTC	2 cut(s)	167, 263
XspI	CTAG	2 cut(s)	87, 290
ZraI	GACGTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.