FvH4_4g36300

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
33292889 .. 33296253
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36300.t5

Sequence Viewer

Length: 1380 bp
ATGGGGAGTAGGGTTCCGGTGCAGCAGCAGTACACCATGAGAACGCCGCCGCCGAATACCTTCCTCGCCGCCGCCAGCAGCCCTCTCCACGACCTCAACGATCCCCGCTCCGCCAAGCTCGACTCCATCGCCGCCGACAGCCTCGACAACGACGAAGACGACTCCAGCGCCGGCGTCAGCGACTGCATCCATGACTCGTACTCCAACTCTCTGCCGGTTCACGGCGTCGGCGTGGAGGATGAGCCGTCTAGCCTCGACAACGACGGGTCGTCTAGCTCCAGAGCTCCTCCCTACGACATCGACATGGTGTCGCTTCAAGATGTGTCGCCGATTGAGTCAGCTAGGGCGAGATTTCTGCAACTTGTGGTGGATCATTTTCTTAGCCAACATGTGATCCAAGCGATTGATAGTGAGGATAGTGGCGGCAGTGGTTATAGTGCTCGGTCTGGGCAAGATAAGCTTAGTAAGAGGAAGCTTGGGGAGGTACAGGTTGAAGGAGACCCAAGGTTTGCGTTGCCGTTGATGTATGTTGCAAATATTTACGAAACTTTAGTTCATGAAGTAGACACTAGGCTTGCTTCCGTGGGTGGATTTCGCGAAAAGACTATTGGTGTTGCTCTTGAAGCAGCTGGCGGTTTGTATAGATTGCTGGCTAAGAAATTTCCCAAGAAAGGACCATGTACATTTAGAAGAAGAGAATTGGCCACTTCTCATGAAACGAGGGCAAGATTTCCAGAATTGGTTGTACAAGAAGAGAGGCGAATCCGTTTTGTAGTAGTCAATGGATTGGATATTGTGGAAAAACCAAATAGCCTACCTATTGATGATGCTGAGTGGTTCATAAGATTGACTGGTCGGAATGAAGTGGCTGTCTCTGCTCGAGACTTTAAGTTCTACTCTCCAAGACACAAGTGTAGGCGTGGTCCATCAAACTCTTCTCCTAATATGCTCAGTTTACCTACGTATCCTGGACCTGACAATTCCTCTATGTTGGCTGCTGCCCAAGGATTCCGCTCCATAAATGAACCACAAAATCAGCCGGAGACTCCATCCAAGCATCATCATATGCAACCTCTATCACTCCAGTCTCAGTTTCAAACTGTTCACCAGAACCATCACCAATCCATGCACCAAAGTCAACACTCTGTTCACTATTCCCAAAACCATGAATGCGGTCCAACCTCGCACCTCCCTGATATAGCTCATGCTCACCATTCGTCAACCTTATCGCAACACATGGCTTGCTTACAACATGTAGGGGGACGCTTACATGTAATGCCATCCAACCCCGCCAAGTTTTGCGACGAATGCGGCACCCAGTACCTAAGAGAAACCTCCAAATTCTGCTCCGAATGTGGCGTCAAGAGATTGGGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

50.75

Weight (kDa)

6.33

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1313
AccBSI CCGCTC 2 cut(s) 108, 1014
AccI GTMKAC 1 cut(s) 564
AccII CGCG 1 cut(s) 597
AclWI GGATC 3 cut(s) 95, 378, 388
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 2 cut(s) 659, 1340
AcyI GRCGYC 3 cut(s) 174, 225, 1359
AfaI GTAC 6 cut(s) 32, 200, 486, 682, 747, 1322
AfiI CCNNNNNNNGG 2 cut(s) 221, 671
AflIII ACRYGT 3 cut(s) 388, 1252, 1270
AgsI TTSAA 4 cut(s) 317, 494, 623, 1097
AhdI GACNNNNNGTC 2 cut(s) 268, 307
AjnI CCWGG 1 cut(s) 967
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AluBI AGCT 8 cut(s) 118, 276, 284, 341, 460, 475, 629, 1202
AluI AGCT 8 cut(s) 118, 276, 284, 341, 460, 475, 629, 1202
Alw21I GWGCWC 2 cut(s) 286, 442
Alw26I GTCTC 5 cut(s) 492, 876, 877, 1037, 1092
AlwI GGATC 3 cut(s) 95, 378, 388
AlwNI CAGNNNCTG 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 1 cut(s) 702
ApeKI GCWGC 6 cut(s) 22, 25, 78, 626, 995, 998
ApoI RAATTY 2 cut(s) 659, 1340
ArsI GACNNNNNNTTYG 4 cut(s) 491, 523, 1344, 1376
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 4 cut(s) 674, 923, 971, 1175
AsuHPI GGTGA 3 cut(s) 1097, 1109, 1202
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 4 cut(s) 674, 923, 971, 1175
BaeI ACNNNNGTAYC 2 cut(s) 947, 980
BalI TGGCCA 1 cut(s) 704
BanI GGYRCC 1 cut(s) 1313
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 286, 442
BbvI GCAGC 6 cut(s) 34, 37, 90, 638, 982, 985
BccI CCATC 5 cut(s) 134, 934, 1057, 1122, 1288
BceAI ACGGC 3 cut(s) 229, 238, 502
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 969
BciVI GTATCC 1 cut(s) 975
BcoDI GTCTC 5 cut(s) 492, 876, 877, 1037, 1092
BfaI CTAG 4 cut(s) 249, 273, 342, 570
BfoI RGCGCY 1 cut(s) 171
BfuI GTATCC 1 cut(s) 975
Bme1390I CCNGG 1 cut(s) 969
Bme18I GGWCC 4 cut(s) 674, 923, 971, 1175
BmeRI GACNNNNNGTC 2 cut(s) 268, 307
BmeT110I CYCGRG 1 cut(s) 879
BmgT120I GGNCC 4 cut(s) 674, 923, 971, 1175
BmiI GGNNCC 2 cut(s) 15, 1315
BmrFI CCNGG 1 cut(s) 969
BmrI ACTGGG 1 cut(s) 1312
BmsI GCATC 3 cut(s) 195, 817, 1066
BmuI ACTGGG 1 cut(s) 1312
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 3 cut(s) 148, 262, 1067
BsaAI YACGTR 1 cut(s) 963
BsaHI GRCGYC 3 cut(s) 174, 225, 1359
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 503, 582, 1003
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 671
Bse118I RCCGGY 2 cut(s) 170, 214
Bse1I ACTGG 3 cut(s) 856, 1084, 1318
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 3 cut(s) 503, 582, 1003
BseGI GGATG 4 cut(s) 186, 244, 1049, 1280
BseLI CCNNNNNNNGG 2 cut(s) 221, 671
BseMII CTCAG 3 cut(s) 822, 964, 1103
BseNI ACTGG 3 cut(s) 856, 1084, 1318
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 6 cut(s) 34, 37, 90, 638, 982, 985
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 1 cut(s) 704
BshNI GGYRCC 1 cut(s) 1313
BsiHKAI GWGCWC 2 cut(s) 286, 442
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 4 cut(s) 17, 171, 215, 1040
BslFI GGGAC 1 cut(s) 1275
BslI CCNNNNNNNGG 2 cut(s) 221, 671
BsmAI GTCTC 5 cut(s) 492, 876, 877, 1037, 1092
BsmFI GGGAC 1 cut(s) 1275
BsmI GAATGC 2 cut(s) 1175, 1313
BsnI GGCC 1 cut(s) 704
Bso31I GGTCTC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 879
Bsp1286I GDGCHC 2 cut(s) 286, 442
Bsp1407I TGTACA 2 cut(s) 680, 745
Bsp143I GATC 3 cut(s) 100, 370, 393
Bsp68I TCGCGA 1 cut(s) 597
BspANI GGCC 1 cut(s) 704
BspCNI CTCAG 3 cut(s) 823, 963, 1102
BspFNI CGCG 1 cut(s) 597
BspHI TCATGA 2 cut(s) 556, 712
BspLI GGNNCC 2 cut(s) 15, 1315
BspPI GGATC 3 cut(s) 95, 378, 388
BspT107I GGYRCC 1 cut(s) 1313
BspTNI GGTCTC 1 cut(s) 492
BsrBI CCGCTC 2 cut(s) 108, 1014
BsrFI RCCGGY 2 cut(s) 170, 214
BsrGI TGTACA 2 cut(s) 680, 745
BsrI ACTGG 3 cut(s) 856, 1084, 1318
BssAI RCCGGY 2 cut(s) 170, 214
BssECI CCNNGG 3 cut(s) 503, 582, 1003
BssMI GATC 3 cut(s) 100, 370, 393
BssNI GRCGYC 3 cut(s) 174, 225, 1359
BssT1I CCWWGG 2 cut(s) 503, 1003
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 1 cut(s) 1102
Bst6I CTCTTC 3 cut(s) 688, 747, 940
BstACI GRCGYC 3 cut(s) 174, 225, 1359
BstAUI TGTACA 2 cut(s) 680, 745
BstBAI YACGTR 1 cut(s) 963
BstC8I GCNNGC 6 cut(s) 76, 172, 576, 631, 651, 1243
BstDEI CTNAG 7 cut(s) 380, 461, 654, 831, 950, 1089, 1325
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 4 cut(s) 186, 244, 1049, 1280
BstFNI CGCG 1 cut(s) 597
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 3 cut(s) 103, 373, 396
BstMAI GTCTC 5 cut(s) 492, 876, 877, 1037, 1092
BstMBI GATC 3 cut(s) 100, 370, 393
BstMWI GCNNNNNNNGC 4 cut(s) 457, 623, 875, 1308
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 3 cut(s) 392, 1256, 1274
BstSCI CCNGG 1 cut(s) 967
BstSNI TACGTA 1 cut(s) 963
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 6 cut(s) 34, 37, 90, 638, 982, 985
BstV2I GAAGAC 1 cut(s) 162
BsuI GTATCC 1 cut(s) 975
BsuRI GGCC 1 cut(s) 704
BtgI CCRYGG 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 4 cut(s) 186, 244, 1049, 1280
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 433
BtuMI TCGCGA 1 cut(s) 597
Cac8I GCNNGC 6 cut(s) 76, 172, 576, 631, 651, 1243
CaiI CAGNNNCTG 1 cut(s) 183
CciI TCATGA 2 cut(s) 556, 712
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 2 cut(s) 170, 214
Cfr13I GGNCC 4 cut(s) 674, 923, 971, 1175
CseI GACGC 4 cut(s) 163, 214, 1272, 1348
Csp6I GTAC 6 cut(s) 31, 199, 485, 681, 746, 1321
CviQI GTAC 6 cut(s) 31, 199, 485, 681, 746, 1321
DdeI CTNAG 7 cut(s) 380, 461, 654, 831, 950, 1089, 1325
DpnI GATC 3 cut(s) 102, 372, 395
DpnII GATC 3 cut(s) 100, 370, 393
DriI GACNNNNNGTC 2 cut(s) 268, 307
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 3 cut(s) 688, 747, 940
Eam1105I GACNNNNNGTC 2 cut(s) 268, 307
EarI CTCTTC 3 cut(s) 688, 747, 940
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 284
Eco105I TACGTA 1 cut(s) 963
Eco130I CCWWGG 2 cut(s) 503, 1003
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 492
Eco47I GGWCC 4 cut(s) 674, 923, 971, 1175
Eco53kI GAGCTC 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 879
EcoICRI GAGCTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 503, 1003
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 2 cut(s) 503, 1003
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 1275
FauI CCCGC 2 cut(s) 113, 1297
FauNDI CATATG 1 cut(s) 1065
FblI GTMKAC 1 cut(s) 564
FokI GGATG 4 cut(s) 173, 251, 1036, 1267
FriOI GRGCYC 1 cut(s) 286
FspBI CTAG 4 cut(s) 249, 273, 342, 570
GlaI GCGC 1 cut(s) 169
GsuI CTGGAG 3 cut(s) 148, 262, 1067
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 704
HapII CCGG 4 cut(s) 17, 171, 215, 1040
HgaI GACGC 4 cut(s) 163, 214, 1272, 1348
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 3 cut(s) 174, 225, 1359
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 2 cut(s) 1139, 1221
HindII GTYRAC 2 cut(s) 1139, 1221
HindIII AAGCTT 2 cut(s) 458, 473
HinfI GANTC 7 cut(s) 122, 161, 194, 335, 762, 1008, 1045
HpaII CCGG 4 cut(s) 17, 171, 215, 1040
HphI GGTGA 3 cut(s) 1097, 1109, 1202
Hpy166II GTNNAC 8 cut(s) 33, 220, 565, 956, 1105, 1139, 1150, 1221
Hpy188I TCNGA 2 cut(s) 858, 1351
Hpy188III TCNNGA 9 cut(s) 279, 317, 557, 596, 620, 713, 734, 881, 1363
Hpy8I GTNNAC 8 cut(s) 33, 220, 565, 956, 1105, 1139, 1150, 1221
Hpy99I CGWCG 4 cut(s) 155, 230, 266, 1307
HpyAV CCTTC 2 cut(s) 70, 488
HpyCH4III ACNGT 1 cut(s) 1102
HpyCH4IV ACGT 1 cut(s) 962
HpyCH4V TGCA 6 cut(s) 22, 186, 358, 533, 1069, 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 457, 623, 875, 1308
HpyF3I CTNAG 7 cut(s) 380, 461, 654, 831, 950, 1089, 1325
HpySE526I ACGT 1 cut(s) 962
Hsp92I GRCGYC 3 cut(s) 174, 225, 1359
HspAI GCGC 1 cut(s) 168
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 100, 370, 393
LmnI GCTCC 5 cut(s) 113, 281, 289, 1019, 1352
Lsp1109I GCAGC 6 cut(s) 34, 37, 90, 638, 982, 985
LweI GCATC 3 cut(s) 195, 817, 1066
MaeI CTAG 4 cut(s) 249, 273, 342, 570
MaeII ACGT 1 cut(s) 962
MalI GATC 3 cut(s) 102, 372, 395
MbiI CCGCTC 2 cut(s) 108, 1014
MboI GATC 3 cut(s) 100, 370, 393
MboII GAAGA 5 cut(s) 167, 702, 705, 764, 927
MhlI GDGCHC 2 cut(s) 286, 442
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 5 cut(s) 659, 698, 737, 979, 1340
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 5 cut(s) 116, 155, 188, 344, 1039
MmeI TCCRAC 4 cut(s) 228, 836, 1202, 1308
Mox20I TGGCCA 1 cut(s) 704
MreI CGCCGGCG 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 59
MscI TGGCCA 1 cut(s) 704
MseI TTAA 1 cut(s) 888
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 4 cut(s) 17, 171, 215, 1040
MspR9I CCNGG 1 cut(s) 969
Mva1269I GAATGC 2 cut(s) 1175, 1313
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 4 cut(s) 457, 623, 875, 1308
NaeI GCCGGC 1 cut(s) 172
NdeI CATATG 1 cut(s) 1065
NdeII GATC 3 cut(s) 100, 370, 393
NgoMIV GCCGGC 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 15, 1315
NruI TCGCGA 1 cut(s) 597
NspI RCATGY 3 cut(s) 392, 1256, 1274
PaeR7I CTCGAG 1 cut(s) 879
PagI TCATGA 2 cut(s) 556, 712
PciI ACATGT 3 cut(s) 388, 1252, 1270
PcsI WCGNNNNNNNCGW 5 cut(s) 50, 96, 150, 156, 228
PctI GAATGC 2 cut(s) 1175, 1313
PdiI GCCGGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 762, 1008
PfoI TCCNGGA 1 cut(s) 967
PleI GAGTC 5 cut(s) 116, 155, 188, 343, 1039
PpsI GAGTC 5 cut(s) 116, 155, 188, 343, 1039
Ppu21I YACGTR 1 cut(s) 963
PscI ACATGT 3 cut(s) 388, 1252, 1270
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 2 cut(s) 15, 1315
PspPI GGNCC 4 cut(s) 674, 923, 971, 1175
PstNI CAGNNNCTG 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 629
RruI TCGCGA 1 cut(s) 597
RsaI GTAC 6 cut(s) 32, 200, 486, 682, 747, 1322
RsaNI GTAC 6 cut(s) 31, 199, 485, 681, 746, 1321
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 888
Sau3AI GATC 3 cut(s) 100, 370, 393
Sau96I GGNCC 4 cut(s) 674, 923, 971, 1175
SchI GAGTC 5 cut(s) 116, 155, 188, 344, 1039
ScrFI CCNGG 1 cut(s) 969
SduI GDGCHC 2 cut(s) 286, 442
SfaNI GCATC 3 cut(s) 195, 817, 1066
Sfr274I CTCGAG 1 cut(s) 879
SgrAI CRCCGGYG 1 cut(s) 170
SinI GGWCC 4 cut(s) 674, 923, 971, 1175
SlaI CTCGAG 1 cut(s) 879
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
SnaBI TACGTA 1 cut(s) 963
Sse9I AATT 5 cut(s) 659, 698, 737, 979, 1340
SspI AATATT 1 cut(s) 538
SspMI CTAG 4 cut(s) 249, 273, 342, 570
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 967
StyI CCWWGG 2 cut(s) 503, 1003
TaaI ACNGT 1 cut(s) 1102
TaiI ACGT 1 cut(s) 965
TaqI TCGA 5 cut(s) 120, 144, 255, 300, 880
TaqII GACCGA 1 cut(s) 432
TasI AATT 5 cut(s) 659, 698, 737, 979, 1340
TatI WGTACW 3 cut(s) 30, 680, 745
TauI GCSGC 7 cut(s) 49, 52, 71, 74, 134, 426, 1314
TfiI GAWTC 2 cut(s) 762, 1008
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 1 cut(s) 433
TseI GCWGC 6 cut(s) 22, 25, 78, 626, 995, 998
TspDTI ATGAA 7 cut(s) 545, 573, 729, 829, 876, 1038, 1182
TspGWI ACGGA 2 cut(s) 571, 755
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 4 cut(s) 674, 923, 971, 1175
XapI RAATTY 2 cut(s) 659, 1340
XceI RCATGY 3 cut(s) 392, 1256, 1274
XhoI CTCGAG 1 cut(s) 879
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 4 cut(s) 249, 273, 342, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.