Rw4G036650

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
63493951 .. 63497357
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036650.1

Sequence Viewer

Length: 1299 bp
ATGGGGAGTAGGGTTCCGGTGCAGCACTACAACATGAGATCGCCGCCGCCGAGTTCCTTCATCGGCGGCAGCCCCCTGCACGACCTCAACAACAACGCCGTCGATTCCCGCTCCACCAAGCTCGAATCGATCGGCGGCGGCGACGCCGTCGTCAACGACAGCCTCGACAACGACGACGATTCCAGCGCCGTCGTCAGCGACTGTATCCACGAGTCCTACTCGAATTCTCTGCCGATTCACGGCGTCGGAGTGGAAGAAGAGCGGTCTAGTCTCGACAACGACGGGTCGTCTAGCTCCAGAGCTCCGTACGACATTTTGTCCCTTCAAGATGTGTCACCTATTGAATCATCAAGGGCTAGATTTCTGCAACTTGTGGTGGATCATTTTATTAGTGAACATGTGGTCGAAGCGATTGATAGTGAGGGTGGTGGTAATGATTATAGTGCTCAGTCTGGCCAAGATAAACTTAATAAGAGGAAGCATGGGGAGGTACAGCTTGAAGGAGACCCGAGGTTTGCTTTGCCATTGATGTATATTGCAAATATGTACCAAACTTTAGTTCATGAGGTAGACACTAGGCTTGCTTCCGTGGGTGGATTTCGCGAAAAGACTATTGGTGTTGCTCTTGAAGCAGCTGGTGGTTTGTATAGATTGCTGGCTAAGAAATTTCCCAAGAAAGGATCATGTACATTTAAGAGAAGAGAATTGGCCACTTCTCTTGAAACGAGGACAAGATTTCCAGAGTTGGTCGTACAAGAAGAGAAGCGTGTCCGTTTTGTTGTAGTCAATGGTTTGGATATTGTTGAAAAGCCAAATAGCCTACCTATTGATGATGCTGAGTGGTTCATAAGATTGACTGGTCGGAATGAAGTGGCTGTCTCTGCTCGAGACTTTAAGTTCTACTCTCCAAGACACAAGTATAGGCGTGTTCCATCAAACTCTTCGCCTAATATGATGGGTTTACCTACGTATCCTGGCCCTGACAATTCTTCTATGTTGGCTGCTGCCCAAGGATTCCGCTCAGTAAATGAACCACAAAATCAGCAGGAGACTCCATCAAAGCATCATCATATGCAACCTCTGTCACTCCAACCTCAGTTTCAAACTGTTCACCAGAATCATCACCAATCAATGCACCAAAGTCAACACGCTGTTCACTATTCCCAAAACCATGAATGCGGTCCAACCTCGCACCTGCCTGAAATCCCTCATGCTCACCATTCGCCAACCATATCGCAACACATATCTTGCTTACAACACGTAGGGGGACGCTTGCATGTATTGGTGAGCCCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

47.87

Weight (kDa)

6.28

Isoelectric Point (pI)

67.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1203
AasI GACNNNNNNGTC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 1203
AccBSI CCGCTC 3 cut(s) 111, 262, 1020
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 603
AciI CCGC 9 cut(s) 44, 47, 66, 109, 135, 138, 262, 1018, 1179
AclWI GGATC 2 cut(s) 387, 688
AcoI YGGCCR 2 cut(s) 454, 708
AcsI RAATTY 2 cut(s) 223, 665
AcyI GRCGYC 2 cut(s) 144, 243
AfaI GTAC 5 cut(s) 308, 492, 548, 688, 753
AfiI CCNNNNNNNGG 2 cut(s) 239, 677
AflIII ACRYGT 2 cut(s) 397, 1258
AgsI TTSAA 7 cut(s) 326, 344, 500, 629, 722, 806, 1103
AhdI GACNNNNNGTC 2 cut(s) 286, 316
AjnI CCWGG 1 cut(s) 973
AjuI GAANNNNNNNTTGG 6 cut(s) 543, 575, 597, 629, 1083, 1115
AluBI AGCT 5 cut(s) 121, 294, 302, 496, 635
AluI AGCT 5 cut(s) 121, 294, 302, 496, 635
Alw21I GWGCWC 2 cut(s) 304, 448
Alw26I GTCTC 5 cut(s) 275, 498, 882, 883, 1043
AlwI GGATC 2 cut(s) 387, 688
AlwNI CAGNNNCTG 1 cut(s) 201
Ama87I CYCGRG 2 cut(s) 508, 885
AoxI GGCC 3 cut(s) 454, 708, 976
ApeKI GCWGC 5 cut(s) 22, 69, 632, 1001, 1004
ApoI RAATTY 2 cut(s) 223, 665
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 977, 1181
AsuHPI GGTGA 5 cut(s) 327, 1103, 1115, 1208, 1297
AvaI CYCGRG 2 cut(s) 508, 885
AvaII GGWCC 1 cut(s) 1181
BaeI ACNNNNGTAYC 2 cut(s) 953, 986
BalI TGGCCA 2 cut(s) 456, 710
BanII GRGCYC 2 cut(s) 304, 1292
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 304, 448
BbvI GCAGC 5 cut(s) 34, 81, 644, 988, 991
BccI CCATC 3 cut(s) 940, 949, 1063
BceAI ACGGC 4 cut(s) 83, 131, 173, 256
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 975
BciVI GTATCC 2 cut(s) 215, 981
BcoDI GTCTC 5 cut(s) 275, 498, 882, 883, 1043
BfaI CTAG 4 cut(s) 267, 291, 357, 576
BfmI CTRYAG 1 cut(s) 1295
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 1203
BfuI GTATCC 2 cut(s) 215, 981
Bme1390I CCNGG 1 cut(s) 975
Bme18I GGWCC 1 cut(s) 1181
BmeRI GACNNNNNGTC 2 cut(s) 286, 316
BmeT110I CYCGRG 2 cut(s) 508, 885
BmgT120I GGNCC 2 cut(s) 977, 1181
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 975
BmsI GCATC 2 cut(s) 823, 1072
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 280
Bsa29I ATCGAT 1 cut(s) 128
BsaAI YACGTR 2 cut(s) 969, 1261
BsaHI GRCGYC 2 cut(s) 144, 243
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 509, 588, 1009
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 677
Bse1I ACTGG 1 cut(s) 862
BseBI CCWGG 1 cut(s) 975
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 509, 588, 1009
BseLI CCNNNNNNNGG 2 cut(s) 239, 677
BseMII CTCAG 4 cut(s) 461, 828, 1035, 1109
BseNI ACTGG 1 cut(s) 862
BseXI GCAGC 5 cut(s) 34, 81, 644, 988, 991
BsgI GTGCAG 2 cut(s) 41, 62
Bsh1236I CGCG 1 cut(s) 603
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 456, 710, 978
BshVI ATCGAT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 304, 448
BsiHKCI CYCGRG 2 cut(s) 508, 885
BsiSI CCGG 1 cut(s) 17
BsiWI CGTACG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 304, 1281
BslI CCNNNNNNNGG 2 cut(s) 239, 677
BsmAI GTCTC 5 cut(s) 275, 498, 882, 883, 1043
BsmFI GGGAC 2 cut(s) 304, 1281
BsmI GAATGC 1 cut(s) 1181
BsnI GGCC 3 cut(s) 456, 710, 978
Bso31I GGTCTC 1 cut(s) 498
BsoBI CYCGRG 2 cut(s) 508, 885
Bsp1286I GDGCHC 3 cut(s) 304, 448, 1292
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 4 cut(s) 38, 129, 379, 680
Bsp68I TCGCGA 1 cut(s) 603
BspACI CCGC 9 cut(s) 44, 47, 66, 109, 135, 138, 262, 1018, 1179
BspANI GGCC 3 cut(s) 456, 710, 978
BspCNI CTCAG 4 cut(s) 460, 829, 1034, 1108
BspDI ATCGAT 1 cut(s) 128
BspFNI CGCG 1 cut(s) 603
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 1203
BspPI GGATC 2 cut(s) 387, 688
BspQI GCTCTTC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 498
BsrBI CCGCTC 3 cut(s) 111, 262, 1020
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 1 cut(s) 862
BssECI CCNNGG 3 cut(s) 509, 588, 1009
BssMI GATC 4 cut(s) 38, 129, 379, 680
BssNI GRCGYC 2 cut(s) 144, 243
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 1009
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 975
Bst4CI ACNGT 2 cut(s) 203, 1108
Bst6I CTCTTC 4 cut(s) 252, 694, 753, 946
BstACI GRCGYC 2 cut(s) 144, 243
BstAUI TGTACA 1 cut(s) 686
BstBAI YACGTR 2 cut(s) 969, 1261
BstC8I GCNNGC 3 cut(s) 582, 657, 1274
BstDEI CTNAG 5 cut(s) 447, 660, 837, 1021, 1095
BstDSI CCRYGG 1 cut(s) 588
BstFNI CGCG 1 cut(s) 603
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 41, 132, 382, 683
BstMAI GTCTC 5 cut(s) 275, 498, 882, 883, 1043
BstMBI GATC 4 cut(s) 38, 129, 379, 680
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 629, 881
BstNI CCWGG 1 cut(s) 975
BstNSI RCATGY 2 cut(s) 401, 1280
BstSCI CCNGG 1 cut(s) 973
BstSFI CTRYAG 1 cut(s) 1295
BstSNI TACGTA 1 cut(s) 969
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 5 cut(s) 34, 81, 644, 988, 991
Bsu15I ATCGAT 1 cut(s) 128
BsuI GTATCC 2 cut(s) 215, 981
BsuRI GGCC 3 cut(s) 456, 710, 978
BsuTUI ATCGAT 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 588
BtuMI TCGCGA 1 cut(s) 603
BveI ACCTGC 1 cut(s) 1203
Cac8I GCNNGC 3 cut(s) 582, 657, 1274
CaiI CAGNNNCTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 977, 1181
ClaI ATCGAT 1 cut(s) 128
CseI GACGC 3 cut(s) 152, 232, 1278
Csp6I GTAC 5 cut(s) 307, 491, 547, 687, 752
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 8 cut(s) 34, 398, 482, 563, 684, 1172, 1211, 1277
CviQI GTAC 5 cut(s) 307, 491, 547, 687, 752
DdeI CTNAG 5 cut(s) 447, 660, 837, 1021, 1095
DpnI GATC 4 cut(s) 40, 131, 381, 682
DpnII GATC 4 cut(s) 38, 129, 379, 680
DrdI GACNNNNNNGTC 1 cut(s) 149
DriI GACNNNNNGTC 2 cut(s) 286, 316
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 2 cut(s) 454, 708
Eam1104I CTCTTC 4 cut(s) 252, 694, 753, 946
Eam1105I GACNNNNNGTC 2 cut(s) 286, 316
EarI CTCTTC 4 cut(s) 252, 694, 753, 946
Ecl136II GAGCTC 1 cut(s) 302
Eco105I TACGTA 1 cut(s) 969
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 2 cut(s) 304, 1292
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 1181
Eco53kI GAGCTC 1 cut(s) 302
Eco88I CYCGRG 2 cut(s) 508, 885
EcoICRI GAGCTC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 2 cut(s) 304, 1292
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 8 cut(s) 37, 401, 485, 566, 687, 1175, 1214, 1280
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 304, 1281
FatI CATG 8 cut(s) 33, 397, 481, 562, 683, 1171, 1210, 1276
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 1071
FblI GTMKAC 1 cut(s) 570
FriOI GRGCYC 2 cut(s) 304, 1292
FspBI CTAG 4 cut(s) 267, 291, 357, 576
GlaI GCGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 456, 710, 978
HapII CCGG 1 cut(s) 17
HgaI GACGC 3 cut(s) 152, 232, 1278
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 144, 243
Hin1II CATG 8 cut(s) 37, 401, 485, 566, 687, 1175, 1214, 1280
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 2 cut(s) 154, 1145
HindII GTYRAC 2 cut(s) 154, 1145
HinfI GANTC 9 cut(s) 104, 125, 179, 212, 235, 344, 1014, 1051, 1117
HpaII CCGG 1 cut(s) 17
HphI GGTGA 5 cut(s) 327, 1103, 1115, 1208, 1297
Hpy166II GTNNAC 7 cut(s) 154, 395, 571, 962, 1111, 1145, 1156
Hpy188I TCNGA 2 cut(s) 248, 864
Hpy188III TCNNGA 9 cut(s) 272, 297, 326, 563, 602, 626, 719, 740, 887
Hpy8I GTNNAC 7 cut(s) 154, 395, 571, 962, 1111, 1145, 1156
Hpy99I CGWCG 8 cut(s) 104, 146, 152, 176, 179, 194, 248, 284
HpyAV CCTTC 3 cut(s) 67, 332, 494
HpyCH4III ACNGT 2 cut(s) 203, 1108
HpyCH4IV ACGT 2 cut(s) 968, 1260
HpyCH4V TGCA 7 cut(s) 22, 79, 367, 539, 1075, 1135, 1276
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 881
HpyF3I CTNAG 5 cut(s) 447, 660, 837, 1021, 1095
HpySE526I ACGT 2 cut(s) 968, 1260
Hsp92I GRCGYC 2 cut(s) 144, 243
Hsp92II CATG 8 cut(s) 37, 401, 485, 566, 687, 1175, 1214, 1280
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 4 cut(s) 38, 129, 379, 680
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 116, 299, 307
Lsp1109I GCAGC 5 cut(s) 34, 81, 644, 988, 991
LweI GCATC 2 cut(s) 823, 1072
MaeI CTAG 4 cut(s) 267, 291, 357, 576
MaeII ACGT 2 cut(s) 968, 1260
MaeIII GTNAC 2 cut(s) 333, 1083
MalI GATC 4 cut(s) 40, 131, 381, 682
MbiI CCGCTC 3 cut(s) 111, 262, 1020
MboI GATC 4 cut(s) 38, 129, 379, 680
MboII GAAGA 6 cut(s) 266, 269, 711, 770, 933, 981
MhlI GDGCHC 3 cut(s) 304, 448, 1292
MlsI TGGCCA 2 cut(s) 456, 710
MluCI AATT 4 cut(s) 223, 665, 704, 985
MluNI TGGCCA 2 cut(s) 456, 710
MlyI GAGTC 2 cut(s) 221, 1045
MmeI TCCRAC 4 cut(s) 226, 842, 1114, 1208
Mox20I TGGCCA 2 cut(s) 456, 710
MscI TGGCCA 2 cut(s) 456, 710
MseI TTAA 3 cut(s) 468, 693, 894
Msp20I TGGCCA 2 cut(s) 456, 710
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 975
Mva1269I GAATGC 1 cut(s) 1181
MvaI CCWGG 1 cut(s) 975
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 2 cut(s) 629, 881
NdeI CATATG 1 cut(s) 1071
NdeII GATC 4 cut(s) 38, 129, 379, 680
NlaIII CATG 8 cut(s) 37, 401, 485, 566, 687, 1175, 1214, 1280
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 333, 1083
NruI TCGCGA 1 cut(s) 603
NspI RCATGY 2 cut(s) 401, 1280
PaeR7I CTCGAG 1 cut(s) 885
PagI TCATGA 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 1203
PciI ACATGT 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 252
PcsI WCGNNNNNNNCGW 4 cut(s) 47, 138, 162, 171
PctI GAATGC 1 cut(s) 1181
PfeI GAWTC 7 cut(s) 104, 125, 179, 235, 344, 1014, 1117
Pfl23II CGTACG 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 146
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 2 cut(s) 220, 1045
PpsI GAGTC 2 cut(s) 220, 1045
Ppu21I YACGTR 2 cut(s) 969, 1261
PscI ACATGT 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 973
PspGI CCWGG 1 cut(s) 973
PspLI CGTACG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 977, 1181
PstNI CAGNNNCTG 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 146
PvuI CGATCG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 635
RruI TCGCGA 1 cut(s) 603
RsaI GTAC 5 cut(s) 308, 492, 548, 688, 753
RsaNI GTAC 5 cut(s) 307, 491, 547, 687, 752
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 3 cut(s) 468, 693, 894
Sau3AI GATC 4 cut(s) 38, 129, 379, 680
Sau96I GGNCC 2 cut(s) 977, 1181
SchI GAGTC 2 cut(s) 221, 1045
ScrFI CCNGG 1 cut(s) 975
SduI GDGCHC 3 cut(s) 304, 448, 1292
SfaNI GCATC 2 cut(s) 823, 1072
SfcI CTRYAG 1 cut(s) 1295
Sfr274I CTCGAG 1 cut(s) 885
SinI GGWCC 1 cut(s) 1181
SlaI CTCGAG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 885
SmoI CTYRAG 1 cut(s) 885
SnaBI TACGTA 1 cut(s) 969
Sse9I AATT 4 cut(s) 223, 665, 704, 985
SsiI CCGC 9 cut(s) 44, 47, 66, 109, 135, 138, 262, 1018, 1179
SspMI CTAG 4 cut(s) 267, 291, 357, 576
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 2 cut(s) 203, 1108
TaiI ACGT 2 cut(s) 971, 1263
TaqI TCGA 8 cut(s) 102, 123, 128, 165, 221, 273, 405, 886
TasI AATT 4 cut(s) 223, 665, 704, 985
TatI WGTACW 1 cut(s) 686
TauI GCSGC 5 cut(s) 46, 49, 69, 138, 141
TfiI GAWTC 7 cut(s) 104, 125, 179, 235, 344, 1014, 1117
Tru1I TTAA 3 cut(s) 468, 693, 894
Tru9I TTAA 3 cut(s) 468, 693, 894
TseFI GTSAC 2 cut(s) 333, 1083
TseI GCWGC 5 cut(s) 22, 69, 632, 1001, 1004
Tsp45I GTSAC 2 cut(s) 333, 1083
TspDTI ATGAA 6 cut(s) 49, 551, 835, 882, 1044, 1188
TspGWI ACGGA 3 cut(s) 294, 577, 761
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 1181
XapI RAATTY 2 cut(s) 223, 665
XceI RCATGY 2 cut(s) 401, 1280
XhoI CTCGAG 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 4 cut(s) 267, 291, 357, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.