Rh4AG428900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0007044
Physical Location & Seq
Reverse (-)
72458883 .. 72462142
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG428900.1

Sequence Viewer

Length: 1071 bp
ATGGGGAGTAGGGTTCCGGTGCAGCACTACAACATGAGATCGCCGCCGCCGAGTTCCTTCATCGGCGGCAGCCCTCTGCACGACCTCAACAACAACGCCGTCGATTCCCGCTCCACCAAGCTCGAATCGATCGGCGGCGGCGACGCCGTCGTCAACGACAGCCTCGACAACGACGACGATTCCAGCGCCGTCGTCAGCGACTGTATCCACGAGTCCTACTCGAATTCTCTGCCGATTCACGGCGTCGGAGTGGAAGAAGAGCGGTCTAGTCTCGACAACGACGGGTCGTCTAGCTCCAGAGCTCCGTACGACATTTTGTCCCTTCAAGATGTGTCACCTATTGAATCATCAAGGGCTAGATTTCTGCAACTTGTGGTGGATCATTTTATTAGTGAACATGTGGTCGAAGCGATTGATAGTGAGGGTGGTGGTAATGATTATAGTGCTCAGTCTGGCCAAGATAAACTTAATAAGAGGAAGCATGGGGAGGTACAGCTTGAAGGAGACCCGAGGTTCGCTTTGCCATTGATGTATATTGCAAATATGTACCAAACTTTGGTTCATGAGGTAGACACTAGGCTCGCTTCCGTGGGTGGATTTCGCGAAAAGACTATTGGTGTTGCTCTTGAAGCAGCTGGTGGTTTGTATAGATTGCTGGCTAAGAAATTTCCCAAGAAAGGATCATGTACATTTAAGAGAAGAGAATTGGCCACTTCTCTTGAAACGAGGACAAGATTTCCAGAGTTGGTCGTACAAGAAGAGAAGCGTGTCCGTTTTGTTGTAGTCAATGGTTTGGATATTGTTGAAAAGCCAAATAGCCTACCTATTGATGATGCTGAGTGGTTCATAAGATTGACTGGTCGGAATGAAGTGGCTGTCTCTTCTCGAGACTTTAAGTTCTACTCTCCAAGACACAAGTATAGGCGTGTTCCATCAAACTCTTCGCCTAATATGATGGGTTTACCTACGTATCCTGGCCCTGACAATTCTTCCATGTTGGCTGCTGCCCAAGGATTCCGCTCAGTAAATGAAGTAAGAGTTATCTCTATTAATTATTGTTTTATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.33

Weight (kDa)

5.77

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 556
AccBSI CCGCTC 3 cut(s) 111, 262, 1020
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 603
AciI CCGC 8 cut(s) 44, 47, 66, 109, 135, 138, 262, 1018
AclWI GGATC 2 cut(s) 387, 688
AcoI YGGCCR 2 cut(s) 454, 708
AcsI RAATTY 2 cut(s) 223, 665
AcyI GRCGYC 2 cut(s) 144, 243
AfaI GTAC 5 cut(s) 308, 492, 548, 688, 753
AfiI CCNNNNNNNGG 3 cut(s) 239, 556, 677
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 6 cut(s) 326, 344, 500, 629, 722, 806
AhdI GACNNNNNGTC 2 cut(s) 286, 316
AjnI CCWGG 1 cut(s) 973
AjuI GAANNNNNNNTTGG 4 cut(s) 543, 575, 597, 629
AluBI AGCT 5 cut(s) 121, 294, 302, 496, 635
AluI AGCT 5 cut(s) 121, 294, 302, 496, 635
Alw21I GWGCWC 2 cut(s) 304, 448
Alw26I GTCTC 4 cut(s) 275, 498, 882, 883
AlwI GGATC 2 cut(s) 387, 688
AlwNI CAGNNNCTG 1 cut(s) 201
Ama87I CYCGRG 2 cut(s) 508, 885
AoxI GGCC 3 cut(s) 454, 708, 976
ApeKI GCWGC 5 cut(s) 22, 69, 632, 1001, 1004
ApoI RAATTY 2 cut(s) 223, 665
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AseI ATTAAT 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 977
AsuHPI GGTGA 1 cut(s) 327
AvaI CYCGRG 2 cut(s) 508, 885
BaeI ACNNNNGTAYC 2 cut(s) 953, 986
BalI TGGCCA 2 cut(s) 456, 710
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 304, 448
BbvI GCAGC 5 cut(s) 34, 81, 644, 988, 991
BccI CCATC 2 cut(s) 940, 949
BceAI ACGGC 4 cut(s) 83, 131, 173, 256
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 975
BciVI GTATCC 2 cut(s) 215, 981
BcoDI GTCTC 4 cut(s) 275, 498, 882, 883
BfaI CTAG 4 cut(s) 267, 291, 357, 576
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 2 cut(s) 215, 981
Bme1390I CCNGG 1 cut(s) 975
BmeRI GACNNNNNGTC 2 cut(s) 286, 316
BmeT110I CYCGRG 2 cut(s) 508, 885
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 975
BmsI GCATC 1 cut(s) 823
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 280
Bsa29I ATCGAT 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 969
BsaHI GRCGYC 2 cut(s) 144, 243
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 509, 588, 1009
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 556, 677
Bse1I ACTGG 1 cut(s) 862
BseBI CCWGG 1 cut(s) 975
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 509, 588, 1009
BseLI CCNNNNNNNGG 3 cut(s) 239, 556, 677
BseMII CTCAG 3 cut(s) 461, 828, 1035
BseNI ACTGG 1 cut(s) 862
BseXI GCAGC 5 cut(s) 34, 81, 644, 988, 991
BsgI GTGCAG 2 cut(s) 41, 62
Bsh1236I CGCG 1 cut(s) 603
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 456, 710, 978
BshVI ATCGAT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 304, 448
BsiHKCI CYCGRG 2 cut(s) 508, 885
BsiSI CCGG 1 cut(s) 17
BsiWI CGTACG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 3 cut(s) 239, 556, 677
BsmAI GTCTC 4 cut(s) 275, 498, 882, 883
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 3 cut(s) 456, 710, 978
Bso31I GGTCTC 1 cut(s) 498
BsoBI CYCGRG 2 cut(s) 508, 885
Bsp1286I GDGCHC 2 cut(s) 304, 448
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 4 cut(s) 38, 129, 379, 680
Bsp68I TCGCGA 1 cut(s) 603
BspACI CCGC 8 cut(s) 44, 47, 66, 109, 135, 138, 262, 1018
BspANI GGCC 3 cut(s) 456, 710, 978
BspCNI CTCAG 3 cut(s) 460, 829, 1034
BspDI ATCGAT 1 cut(s) 128
BspFNI CGCG 1 cut(s) 603
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 2 cut(s) 387, 688
BspQI GCTCTTC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 498
BsrBI CCGCTC 3 cut(s) 111, 262, 1020
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 1 cut(s) 862
BssECI CCNNGG 3 cut(s) 509, 588, 1009
BssMI GATC 4 cut(s) 38, 129, 379, 680
BssNI GRCGYC 2 cut(s) 144, 243
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 1009
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 975
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 5 cut(s) 252, 694, 753, 886, 946
BstACI GRCGYC 2 cut(s) 144, 243
BstAUI TGTACA 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 969
BstC8I GCNNGC 2 cut(s) 582, 657
BstDEI CTNAG 4 cut(s) 447, 660, 837, 1021
BstDSI CCRYGG 1 cut(s) 588
BstFNI CGCG 1 cut(s) 603
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 41, 132, 382, 683
BstMAI GTCTC 4 cut(s) 275, 498, 882, 883
BstMBI GATC 4 cut(s) 38, 129, 379, 680
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 1 cut(s) 975
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 973
BstSNI TACGTA 1 cut(s) 969
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 5 cut(s) 34, 81, 644, 988, 991
Bsu15I ATCGAT 1 cut(s) 128
BsuI GTATCC 2 cut(s) 215, 981
BsuRI GGCC 3 cut(s) 456, 710, 978
BsuTUI ATCGAT 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 588
BtuMI TCGCGA 1 cut(s) 603
Cac8I GCNNGC 2 cut(s) 582, 657
CaiI CAGNNNCTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 977
ClaI ATCGAT 1 cut(s) 128
CseI GACGC 2 cut(s) 152, 232
Csp6I GTAC 5 cut(s) 307, 491, 547, 687, 752
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 6 cut(s) 34, 398, 482, 563, 684, 994
CviQI GTAC 5 cut(s) 307, 491, 547, 687, 752
DdeI CTNAG 4 cut(s) 447, 660, 837, 1021
DpnI GATC 4 cut(s) 40, 131, 381, 682
DpnII GATC 4 cut(s) 38, 129, 379, 680
DrdI GACNNNNNNGTC 1 cut(s) 149
DriI GACNNNNNGTC 2 cut(s) 286, 316
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 2 cut(s) 454, 708
Eam1104I CTCTTC 5 cut(s) 252, 694, 753, 886, 946
Eam1105I GACNNNNNGTC 2 cut(s) 286, 316
EarI CTCTTC 5 cut(s) 252, 694, 753, 886, 946
Ecl136II GAGCTC 1 cut(s) 302
Eco105I TACGTA 1 cut(s) 969
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 302
Eco88I CYCGRG 2 cut(s) 508, 885
EcoICRI GAGCTC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 6 cut(s) 37, 401, 485, 566, 687, 997
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 304
FatI CATG 6 cut(s) 33, 397, 481, 562, 683, 993
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 570
FriOI GRGCYC 1 cut(s) 304
FspBI CTAG 4 cut(s) 267, 291, 357, 576
GlaI GCGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 456, 710, 978
HapII CCGG 1 cut(s) 17
HgaI GACGC 2 cut(s) 152, 232
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 144, 243
Hin1II CATG 6 cut(s) 37, 401, 485, 566, 687, 997
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 7 cut(s) 104, 125, 179, 212, 235, 344, 1014
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 4 cut(s) 154, 395, 571, 962
Hpy188I TCNGA 2 cut(s) 248, 864
Hpy8I GTNNAC 4 cut(s) 154, 395, 571, 962
Hpy99I CGWCG 8 cut(s) 104, 146, 152, 176, 179, 194, 248, 284
HpyAV CCTTC 3 cut(s) 67, 332, 494
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 968
HpyCH4V TGCA 4 cut(s) 22, 79, 367, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 4 cut(s) 447, 660, 837, 1021
HpySE526I ACGT 1 cut(s) 968
Hsp92I GRCGYC 2 cut(s) 144, 243
Hsp92II CATG 6 cut(s) 37, 401, 485, 566, 687, 997
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 4 cut(s) 38, 129, 379, 680
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 116, 299, 307
Lsp1109I GCAGC 5 cut(s) 34, 81, 644, 988, 991
LweI GCATC 1 cut(s) 823
MaeI CTAG 4 cut(s) 267, 291, 357, 576
MaeII ACGT 1 cut(s) 968
MaeIII GTNAC 1 cut(s) 333
MalI GATC 4 cut(s) 40, 131, 381, 682
MbiI CCGCTC 3 cut(s) 111, 262, 1020
MboI GATC 4 cut(s) 38, 129, 379, 680
MboII GAAGA 7 cut(s) 266, 269, 711, 770, 873, 933, 981
MhlI GDGCHC 2 cut(s) 304, 448
MlsI TGGCCA 2 cut(s) 456, 710
MluCI AATT 5 cut(s) 223, 665, 704, 985, 1051
MluNI TGGCCA 2 cut(s) 456, 710
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 226, 842
MnlI CCTC 9 cut(s) 84, 95, 173, 415, 468, 481, 504, 559, 720
Mox20I TGGCCA 2 cut(s) 456, 710
MscI TGGCCA 2 cut(s) 456, 710
MseI TTAA 4 cut(s) 468, 693, 894, 1050
Msp20I TGGCCA 2 cut(s) 456, 710
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 975
MvaI CCWGG 1 cut(s) 975
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 4 cut(s) 38, 129, 379, 680
NlaIII CATG 6 cut(s) 37, 401, 485, 566, 687, 997
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 333
NruI TCGCGA 1 cut(s) 603
NspI RCATGY 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 885
PagI TCATGA 1 cut(s) 562
PciI ACATGT 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 252
PcsI WCGNNNNNNNCGW 4 cut(s) 47, 138, 162, 171
PfeI GAWTC 6 cut(s) 104, 125, 179, 235, 344, 1014
Pfl23II CGTACG 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 556
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 969
PscI ACATGT 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 1050
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 973
PspGI CCWGG 1 cut(s) 973
PspLI CGTACG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 977
PstNI CAGNNNCTG 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 146
PvuI CGATCG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 635
RruI TCGCGA 1 cut(s) 603
RsaI GTAC 5 cut(s) 308, 492, 548, 688, 753
RsaNI GTAC 5 cut(s) 307, 491, 547, 687, 752
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 468, 693, 894, 1050
Sau3AI GATC 4 cut(s) 38, 129, 379, 680
Sau96I GGNCC 1 cut(s) 977
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 975
SduI GDGCHC 2 cut(s) 304, 448
SfaNI GCATC 1 cut(s) 823
Sfr274I CTCGAG 1 cut(s) 885
SlaI CTCGAG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 885
SmoI CTYRAG 1 cut(s) 885
SnaBI TACGTA 1 cut(s) 969
Sse9I AATT 5 cut(s) 223, 665, 704, 985, 1051
SsiI CCGC 8 cut(s) 44, 47, 66, 109, 135, 138, 262, 1018
SspMI CTAG 4 cut(s) 267, 291, 357, 576
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 971
TaqI TCGA 8 cut(s) 102, 123, 128, 165, 221, 273, 405, 886
TasI AATT 5 cut(s) 223, 665, 704, 985, 1051
TatI WGTACW 1 cut(s) 686
TauI GCSGC 5 cut(s) 46, 49, 69, 138, 141
TfiI GAWTC 6 cut(s) 104, 125, 179, 235, 344, 1014
Tru1I TTAA 4 cut(s) 468, 693, 894, 1050
Tru9I TTAA 4 cut(s) 468, 693, 894, 1050
TseFI GTSAC 1 cut(s) 333
TseI GCWGC 5 cut(s) 22, 69, 632, 1001, 1004
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 5 cut(s) 49, 551, 835, 882, 1044
TspGWI ACGGA 3 cut(s) 294, 577, 761
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 556
VspI ATTAAT 1 cut(s) 1050
XapI RAATTY 2 cut(s) 223, 665
XceI RCATGY 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 4 cut(s) 267, 291, 357, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.