Rorug01G0481600

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007044
Physical Location & Seq
Forward (+)
56929865 .. 56930486
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0481600.1

Sequence Viewer

Length: 504 bp
ATGGAGCATATCATAAACAAGATCGATAAAGATAGCCTCAAGCCTGGAGATCATATCTATGCTTACAGAAAATTGCACACCTACTCCCACCATGAACAAAAGACGGAAACACATCGCAACGAGCTAAACCATCCAAGAACTGCGGGGTTGACAAAAACCACCTCCGAGGAGTTGTCAAGTCCTGCGTCGACTGCTTCCTCAAACACCACACCCTCCGCCGCTTCCAATATGGCGTTGGTTACGGCCGCTACCTCACCAACTGGCCAGGTACGTACATGCACCACCGGCCGTTCTCACCCGCCAGAAGTGACCATTTGCCGAGCCAATGACTTGTTTAACAGGAACAATGGGTTCGGGGACTACAACTTGTTTGAGAACAACTGCGAGGCGTTTGCAATGTTCTGCAAGACGGAGAAGCGCGTGAGCGACCAGGCGTGCTCCGCCATGTTGTTGATCAAGGCTAGTGTGAAGGTGGCGATGGATAGGCTTCTTCGTGAATCGTGA

Protein Analysis

167

Amino Acids

18.5

Weight (kDa)

8.29

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 140 3.8e-09 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AccII CGCG 1 cut(s) 420
AciI CCGC 6 cut(s) 143, 216, 219, 246, 299, 441
AcoI YGGCCR 3 cut(s) 243, 262, 286
AfaI GTAC 2 cut(s) 270, 274
AjnI CCWGG 3 cut(s) 43, 264, 429
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw21I GWGCWC 1 cut(s) 440
AoxI GGCC 3 cut(s) 243, 262, 286
AspLEI GCGC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 246, 287
BalI TGGCCA 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 440
BccI CCATC 2 cut(s) 138, 472
BceAI ACGGC 2 cut(s) 258, 273
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 3 cut(s) 45, 266, 431
BclI TGATCA 1 cut(s) 453
BfaI CTAG 1 cut(s) 462
BisI GCNGC 2 cut(s) 219, 246
BlsI GCNGC 2 cut(s) 220, 247
Bme1390I CCNGG 3 cut(s) 45, 266, 431
BmrFI CCNGG 3 cut(s) 45, 266, 431
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 3 cut(s) 45, 266, 431
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 182
BseX3I CGGCCG 2 cut(s) 243, 286
Bsh1236I CGCG 1 cut(s) 420
Bsh1285I CGRYCG 2 cut(s) 246, 289
BshFI GGCC 3 cut(s) 245, 264, 288
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 2 cut(s) 246, 289
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 3 cut(s) 245, 264, 288
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 3 cut(s) 21, 49, 453
BspACI CCGC 6 cut(s) 143, 216, 219, 246, 299, 441
BspANI GGCC 3 cut(s) 245, 264, 288
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 21, 49, 453
Bst2UI CCWGG 3 cut(s) 45, 266, 431
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 436
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 3 cut(s) 24, 52, 456
BstMBI GATC 3 cut(s) 21, 49, 453
BstMCI CGRYCG 2 cut(s) 246, 289
BstMWI GCNNNNNNNGC 3 cut(s) 191, 285, 440
BstNI CCWGG 3 cut(s) 45, 266, 431
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 3 cut(s) 43, 264, 429
BstSNI TACGTA 1 cut(s) 272
BstUI CGCG 1 cut(s) 420
BstZI CGGCCG 2 cut(s) 243, 286
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 3 cut(s) 245, 264, 288
BsuTUI ATCGAT 1 cut(s) 24
BtgZI GCGATG 2 cut(s) 98, 491
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 436
CfoI GCGC 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 284
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 269, 273
CviAII CATG 3 cut(s) 92, 276, 445
CviJI RGCY 9 cut(s) 36, 43, 124, 245, 264, 288, 323, 461, 487
CviKI_1 RGCY 9 cut(s) 36, 43, 124, 245, 264, 288, 323, 461, 487
CviQI GTAC 2 cut(s) 269, 273
DpnI GATC 3 cut(s) 23, 51, 455
DpnII GATC 3 cut(s) 21, 49, 453
EaeI YGGCCR 3 cut(s) 243, 262, 286
EagI CGGCCG 2 cut(s) 243, 286
EciI GGCGGA 2 cut(s) 205, 430
EclXI CGGCCG 2 cut(s) 243, 286
Eco105I TACGTA 1 cut(s) 272
Eco52I CGGCCG 2 cut(s) 243, 286
EcoRII CCWGG 3 cut(s) 43, 264, 429
FaeI CATG 3 cut(s) 95, 279, 448
FaiI YATR 8 cut(s) 9, 14, 54, 60, 93, 230, 277, 446
FaqI GGGAC 1 cut(s) 371
FatI CATG 3 cut(s) 91, 275, 444
FauI CCCGC 2 cut(s) 136, 306
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 219, 246
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 219, 246
FspBI CTAG 1 cut(s) 462
GlaI GCGC 1 cut(s) 419
GluI GCNGC 2 cut(s) 219, 246
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 245, 264, 288
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 420
Hin1II CATG 3 cut(s) 95, 279, 448
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HincII GTYRAC 2 cut(s) 150, 189
HindII GTYRAC 2 cut(s) 150, 189
HinfI GANTC 1 cut(s) 497
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 246, 287
Hpy166II GTNNAC 2 cut(s) 150, 189
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 494, 501
Hpy8I GTNNAC 2 cut(s) 150, 189
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 76, 279, 395, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 285, 440
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 3 cut(s) 95, 279, 448
HspAI GCGC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 3 cut(s) 21, 49, 453
LmnI GCTCC 2 cut(s) 4, 443
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 238, 307
MalI GATC 3 cut(s) 23, 51, 455
MboI GATC 3 cut(s) 21, 49, 453
MboII GAAGA 1 cut(s) 482
MhlI GDGCHC 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 264
MnlI CCTC 7 cut(s) 47, 160, 172, 208, 223, 262, 379
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 264
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 45, 266, 431
MvaI CCWGG 3 cut(s) 45, 266, 431
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 191, 285, 440
NdeII GATC 3 cut(s) 21, 49, 453
NlaIII CATG 3 cut(s) 95, 279, 448
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 279
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 220, 247
Ppu21I YACGTR 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 43, 264, 429
PspGI CCWGG 3 cut(s) 43, 264, 429
RsaI GTAC 2 cut(s) 270, 274
RsaNI GTAC 2 cut(s) 269, 273
RseI CAYNNNNRTG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 219, 246
Sau3AI GATC 3 cut(s) 21, 49, 453
ScrFI CCNGG 3 cut(s) 45, 266, 431
SduI GDGCHC 1 cut(s) 440
SetI ASST 7 cut(s) 83, 126, 164, 254, 270, 274, 474
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SnaBI TACGTA 1 cut(s) 272
Sse9I AATT 1 cut(s) 71
SsiI CCGC 6 cut(s) 143, 216, 219, 246, 299, 441
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 3 cut(s) 43, 264, 429
TaiI ACGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 24, 188
TasI AATT 1 cut(s) 71
TauI GCSGC 2 cut(s) 221, 248
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 2 cut(s) 119, 425
XceI RCATGY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.