Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012728

Physical Location & Seq

Genomic Coordinates Forward (+)

45087 .. 47072

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCAAAGAGTTACTTCAAGCAAGAACATGATCTTGAGAAGAGGAGGGCTGAGGCTGCTAGGATTAGGGAGAAATACCCGGATAGGATTCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAACATTGATAAGAAAAAGTACCTTGTTCCGGCCGATCTAACTGTAGGACAATTTGTTTATGTCATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAATGTTCTTCCACCAACAGGTGCAATTATGTCTGCCATATATGAAGAGAAGAAGGATGAAGATGGCTTTCTCTACGTCACTTACAGCGGTGAGAACACATTCGGTTCCCAGATCCCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

123

Amino Acids

14.04

Weight (kDa)

8.73

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	14 - 117	3.9e-51	Autophagy protein Atg8 ubiquitin like
APG12	PF04110	40 - 117	5.7e-07	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16520 AT4G16520
fragaria_vesca	FvH4_5g00060 FvH4_5g00060
malus_domestica	MD00G1114800.v1.1 MD06G1061100.v1.1
prunus_persica	Prupe.5G072400_v2.0.a1 Prupe.5G072400_v2.0.a1 Prupe.5G072400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202901
rosa_multiflora	Rmu_sc0008159.1_g000018
rosa_roxburghii	Rroxscaffold_3G00254190
rosa_rugosa	Rorug07G0073800 Rorug07G0073800 Rorug07G0073900
rosa_samantha	Rh7AG201500 Rh7DG208500
rosa_wichuraiana	Rw7G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	196, 333
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	157, 263
AgsI	TTSAA	1 cut(s)	19
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	106, 347
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 263
BseGI	GGATG	2 cut(s)	192, 307
BseLI	CCNNNNNNNGG	2 cut(s)	157, 263
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	58
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	80, 92, 158
BslI	CCNNNNNNNGG	2 cut(s)	157, 263
BsnI	GGCC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	31, 163, 357
BspACI	CCGC	2 cut(s)	196, 333
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	352
BssMI	GATC	3 cut(s)	31, 163, 357
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	35, 285
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	192, 307
BstKTI	GATC	3 cut(s)	34, 166, 360
BstMBI	GATC	3 cut(s)	31, 163, 357
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 224
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	192, 307
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	4 cut(s)	50, 56, 161, 312
CviKI_1	RGCY	4 cut(s)	50, 56, 161, 312
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	33, 165, 359
DpnII	GATC	3 cut(s)	31, 163, 357
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	35, 285
EarI	CTCTTC	2 cut(s)	35, 285
EclXI	CGGCCG	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	124
FaeI	CATG	1 cut(s)	32
FaiI	YATR	7 cut(s)	30, 189, 236, 275, 284, 286, 288
FalI	AAGNNNNNCTT	3 cut(s)	31, 215, 247
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	179, 314
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	3 cut(s)	80, 92, 158
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	80, 92, 158
HphI	GGTGA	2 cut(s)	106, 347
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	100, 292
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	218, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 224
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	31, 163, 357
LpnPI	CCDG	4 cut(s)	93, 105, 171, 249
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	11, 322
MalI	GATC	3 cut(s)	33, 165, 359
MboI	GATC	3 cut(s)	31, 163, 357
MboII	GAAGA	5 cut(s)	52, 245, 302, 307, 317
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	3 cut(s)	179, 209, 270
MnlI	CCTC	3 cut(s)	36, 39, 46
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	2 cut(s)	207, 212
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	3 cut(s)	80, 92, 158
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	56, 224
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	31, 163, 357
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	207, 212
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	31, 163, 357
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	3 cut(s)	153, 268, 324
SfcI	CTRYAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	179, 209, 270
SsiI	CCGC	2 cut(s)	196, 333
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	324
TasI	AATT	3 cut(s)	179, 209, 270
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	207, 212
Tru9I	TTAA	2 cut(s)	207, 212
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	303, 318
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.