Rh7DG208500

Belongs to the ATG8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012728
Physical Location & Seq
Reverse (-)
19901971 .. 19904569
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG208500.1

Sequence Viewer

Length: 297 bp
ATGTTGATTTCAGCAGGAATGGCAAAGAGTTACTTCAAGCAAGAACATGATCTTGAGAAGAGGAGGGCTGAGGCTGCTAGGATTAGGGAGAAATACCCTGATAGAATTCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAACATTGATAAGAAAAAGTACCTTGTTCCGGCTGATCTAACTGTAGGACAATTTGTTTATGTCATCCGCAAAAGGATTAAATTAAGTGCAGAGAAGGCAATCTTTATATTCGTGGACAATGTTCTTCCACCAACGGGTAAATTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

98

Amino Acids

11.35

Weight (kDa)

9.77

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 20 - 98 1.8e-35 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AcsI RAATTY 2 cut(s) 105, 287
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 175, 281
AgsI TTSAA 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 105, 287
AsuHPI GGTGA 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 61
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 281
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 175, 281
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 110, 176
BslI CCNNNNNNNGG 2 cut(s) 175, 281
Bsp143I GATC 2 cut(s) 49, 181
BspACI CCGC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 61
BssMI GATC 2 cut(s) 49, 181
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 2 cut(s) 52, 184
BstMBI GATC 2 cut(s) 49, 181
BstMWI GCNNNNNNNGC 3 cut(s) 20, 74, 242
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 210
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 47, 292
CviJI RGCY 3 cut(s) 68, 74, 179
CviKI_1 RGCY 3 cut(s) 68, 74, 179
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 51, 183
DpnII GATC 2 cut(s) 49, 181
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 105
EcoRV GATATC 1 cut(s) 142
FaeI CATG 2 cut(s) 50, 295
FaiI YATR 4 cut(s) 48, 207, 254, 293
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 233, 265
FatI CATG 2 cut(s) 46, 291
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 75
HapII CCGG 2 cut(s) 110, 176
Hin1II CATG 2 cut(s) 50, 295
HpaII CCGG 2 cut(s) 110, 176
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 118, 235
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 74, 242
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 50, 295
Kzo9I GATC 2 cut(s) 49, 181
LpnPI CCDG 3 cut(s) 111, 123, 189
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 51, 183
MboI GATC 2 cut(s) 49, 181
MboII GAAGA 2 cut(s) 70, 263
MluCI AATT 4 cut(s) 105, 197, 227, 287
MnlI CCTC 3 cut(s) 54, 57, 64
MseI TTAA 2 cut(s) 225, 230
MspI CCGG 2 cut(s) 110, 176
MwoI GCNNNNNNNGC 3 cut(s) 20, 74, 242
NdeII GATC 2 cut(s) 49, 181
NlaIII CATG 2 cut(s) 50, 295
PkrI GCNGC 1 cut(s) 76
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 225, 230
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 49, 181
SetI ASST 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 105, 197, 227, 287
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 190
TasI AATT 4 cut(s) 105, 197, 227, 287
Tru1I TTAA 2 cut(s) 225, 230
Tru9I TTAA 2 cut(s) 225, 230
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 280
XapI RAATTY 2 cut(s) 105, 287
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.