Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008159.1

Orthogroup ID

OG0012728

Physical Location & Seq

Genomic Coordinates Forward (+)

100955 .. 105363

Gene Structure 4409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008159.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgacggcggagcggcgatcagagtggaggtcggagaggttgatggtagggattggttgggcgtcgggtcgggttgtgggctggaattggtgtgatgttacgaacttccattttcatctgggaatggcaaagagttacttcaagcaagaacatgatcttgagaagaggagggctgaggctgctaggattagggagaaataccctgataggattccggtgattgtggagaaggcagaaagaagtgatatcccaaacattgataagaaaaagtaccttgttccggctgatctaactgtaggacaatttgtttatgtcatccgcaaaaggattaaattaagtgcagagaaggcaatctttatattcgtggacaatgttcttccaccaacgggggcaattatgtctgccatatatgaagagaagaaggatgaggatgggtttctctatgtcacttacagcggtgagaacacattcggttcccagatcccaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

163

Amino Acids

18.86

Weight (kDa)

8.92

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16520 AT4G16520
fragaria_vesca	FvH4_5g00060 FvH4_5g00060
malus_domestica	MD00G1114800.v1.1 MD06G1061100.v1.1
prunus_persica	Prupe.5G072400_v2.0.a1 Prupe.5G072400_v2.0.a1 Prupe.5G072400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202901
rosa_multiflora	Rmu_sc0008159.1_g000018
rosa_roxburghii	Rroxscaffold_3G00254190
rosa_rugosa	Rorug07G0073800 Rorug07G0073800 Rorug07G0073900
rosa_samantha	Rh7AG201500 Rh7DG208500
rosa_wichuraiana	Rw7G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	13
AciI	CCGC	4 cut(s)	8, 13, 319, 456
AclWI	GGATC	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	280, 386
AgsI	TTSAA	1 cut(s)	142
AlwI	GGATC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	229, 470
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	37, 425
BceAI	ACGGC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	14, 180
BlsI	GCNGC	2 cut(s)	15, 181
BmiI	GGNNCC	1 cut(s)	475
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 386
BseGI	GGATG	3 cut(s)	315, 430, 436
BseLI	CCNNNNNNNGG	2 cut(s)	280, 386
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	215, 281
BslI	CCNNNNNNNGG	2 cut(s)	280, 386
Bsp143I	GATC	4 cut(s)	17, 154, 286, 480
BspACI	CCGC	4 cut(s)	8, 13, 319, 456
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	13
BssMI	GATC	4 cut(s)	17, 154, 286, 480
BssNI	GRCGYC	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	158, 408
BstACI	GRCGYC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	315, 430, 436
BstKTI	GATC	4 cut(s)	20, 157, 289, 483
BstMBI	GATC	4 cut(s)	17, 154, 286, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 347
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	315, 430, 436
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	4 cut(s)	81, 173, 179, 284
CviKI_1	RGCY	4 cut(s)	81, 173, 179, 284
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	4 cut(s)	19, 156, 288, 482
DpnII	GATC	4 cut(s)	17, 154, 286, 480
Eam1104I	CTCTTC	2 cut(s)	158, 408
EarI	CTCTTC	2 cut(s)	158, 408
EciI	GGCGGA	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	1 cut(s)	155
FaiI	YATR	8 cut(s)	153, 312, 359, 398, 407, 409, 411, 444
FalI	AAGNNNNNCTT	4 cut(s)	122, 154, 338, 370
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	14, 180
FokI	GGATG	3 cut(s)	302, 437, 443
Fsp4HI	GCNGC	2 cut(s)	14, 180
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	14, 180
HapII	CCGG	2 cut(s)	215, 281
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	215, 281
HphI	GGTGA	2 cut(s)	229, 470
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	22, 34
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	223, 340, 415
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 347
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	17, 154, 286, 480
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	67, 104, 216, 228, 294
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	97, 134, 445
MalI	GATC	4 cut(s)	19, 156, 288, 482
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	4 cut(s)	17, 154, 286, 480
MboII	GAAGA	4 cut(s)	175, 368, 425, 430
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	4 cut(s)	85, 302, 332, 393
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	21, 30, 159, 162, 169, 421
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	2 cut(s)	330, 335
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	2 cut(s)	215, 281
MwoI	GCNNNNNNNGC	2 cut(s)	179, 347
NdeII	GATC	4 cut(s)	17, 154, 286, 480
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	15, 181
PspN4I	GGNNCC	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	330, 335
SatI	GCNGC	2 cut(s)	14, 180
Sau3AI	GATC	4 cut(s)	17, 154, 286, 480
SetI	ASST	3 cut(s)	32, 41, 276
SfcI	CTRYAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	85, 302, 332, 393
SsiI	CCGC	4 cut(s)	8, 13, 319, 456
SspMI	CTAG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	295
TasI	AATT	4 cut(s)	85, 302, 332, 393
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	330, 335
Tru9I	TTAA	2 cut(s)	330, 335
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	104, 426
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.