FvH4_5g01280

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012610
Physical Location & Seq
Forward (+)
798916 .. 799344
429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01280.t1

Sequence Viewer

Length: 429 bp
ATGGCAGTACCACCCAACCACCCGTTCAAGAAGCTCCTCATCGTCGGTGACAAAGGTGTTGGGAAGACCAACCTTCTTCTTCGATTCTCGGATATACCTATAGCAGGGATAGAACTTGGAGTGAAAACAATTGAGTTGGGCAACGAATTACCAGAACTTGCTACCGCTGATGGTATTTTGTTGATGTATGATGTGACCAATGAGTTATCATTCGAGCATATTCTTAAATACATGCATAATTTTCCGAAAAATGTGAAGAAGATACTGGTGGGGAACAAGGCGGACATGGATGATGAGAGCAAAAGAGCAGTGCGGAGACGTAGAGGTCAAACTCTTGCGGATATATATGAAATCATGTTCTTGGAAACCAGTGCAGAGACCAACAAGAATGTTGAAGACGTTTTCTTTGCATTAGCCTTGAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

5.92

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 54 - 139 1.2e-20 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 324
AciI CCGC 4 cut(s) 165, 281, 313, 338
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 28, 395
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 2 cut(s) 310, 371
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsuHPI GGTGA 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 71, 402
Bbv12I GWGCWC 1 cut(s) 425
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 310, 371
BfmI CTRYAG 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 71, 402
BsaI GGTCTC 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 270, 369
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 270, 369
BseRI GAGGAG 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 310, 371
BsmBI CGTCTC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 425
BspACI CCGC 4 cut(s) 165, 281, 313, 338
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 2 cut(s) 270, 369
BstDEI CTNAG 1 cut(s) 426
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 310, 371
BstNSI RCATGY 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 99
BstV2I GAAGAC 2 cut(s) 71, 402
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 376
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 232, 286, 355
CviJI RGCY 2 cut(s) 34, 416
CviKI_1 RGCY 2 cut(s) 34, 416
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 426
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
EciI GGCGGA 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 371
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 3 cut(s) 235, 289, 358
FatI CATG 3 cut(s) 231, 285, 354
FokI GGATG 1 cut(s) 302
Hin1II CATG 3 cut(s) 235, 289, 358
HinfI GANTC 1 cut(s) 84
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 91, 246
Hpy188III TCNNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 2 cut(s) 319, 399
HpyCH4V TGCA 3 cut(s) 235, 374, 410
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 319, 399
Hsp92II CATG 3 cut(s) 235, 289, 358
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 90, 165, 251, 382
MaeII ACGT 2 cut(s) 319, 399
MaeIII GTNAC 2 cut(s) 47, 193
MboII GAAGA 6 cut(s) 68, 71, 76, 268, 271, 407
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 3 cut(s) 129, 146, 238
MnlI CCTC 2 cut(s) 47, 317
Mph1103I ATGCAT 1 cut(s) 237
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 167
MunI CAATTG 1 cut(s) 129
NlaIII CATG 3 cut(s) 235, 289, 358
NmuCI GTSAC 2 cut(s) 47, 193
NsiI ATGCAT 1 cut(s) 237
NspI RCATGY 1 cut(s) 235
PfeI GAWTC 1 cut(s) 84
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 225
SduI GDGCHC 1 cut(s) 425
SetI ASST 7 cut(s) 36, 58, 75, 100, 322, 328, 402
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 3 cut(s) 129, 146, 238
SsiI CCGC 4 cut(s) 165, 281, 313, 338
TaiI ACGT 2 cut(s) 322, 402
TaqI TCGA 2 cut(s) 82, 213
TasI AATT 3 cut(s) 129, 146, 238
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 315, 376
TseFI GTSAC 2 cut(s) 47, 193
Tsp45I GTSAC 2 cut(s) 47, 193
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 315, 376
XagI CCTNNNNNAGG 1 cut(s) 102
XceI RCATGY 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.