Rorug07G0064800

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012610
Physical Location & Seq
Reverse (-)
4895549 .. 4899014
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0064800.1

Sequence Viewer

Length: 837 bp
ATGACGTACAGGATGGTGTTGGGTTGTAAAAGGGATGATCAGTTTGATTTGAAAGCCATTGTTGAGGAAACGTCTTTCTTGGCTGGGGCTTTCAATATATCTGATTTTGTTCCTTCCCTTGCTGCACTTGATATTCAGGGGTTGACTAAGCGAATGAAGAAAGTTAGCAAGACAATCGATCAGCTCTTGGAGAAGATAATTGACGACCATGAACAAGTTGCTAAAACTACGAGTGGGAAACAAGGGAAGCATGAGGACTTTGTAGACGTCTTGCTTTCATTAATGAACCAACCGTTGAACCCGAATGATGAGCAAGTACACTTCCTTGATCGAACAAATGTGAAAGCCATCTTACTAGACATGATAACGGCGGCTTTTGATACTTCGGCCACATCGATTGTTTGGAGCCTTGCCGAGCTCTTGAGGCATCCAAGGATCATGAAGAATCTCCAAGAAGATATCCAAACTGTGGTTGGCATGGACCGAATGGTGGAAGAGACTGATTTGCCAAAGCTGGATTACTTGAGTATGGTGGTCAAGGAGAGCTTCAGACTACACCCAGTTGGACCATTACTAATCCCACATGAATCTATCGAGGACATTGCAATAAATGGATACGACATACCTAAGAAGTCGCGGATCATTGTAAACATCTGGAGCATTGGAAGAGATCCTAGTGTATGGTCGGAAAATGTTGAGGAATTTTATCCTGAAAGGTTCATGAACAACAATATAGACCTCCGGGGACATGACTTTCAGCTCATCCCATTTGGGTCTGGCCGAAGAGGTTGTCCAGGTCTGCAATTAGGGCTAACCACAGCTGGTGCACTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

278

Amino Acids

31.39

Weight (kDa)

5.21

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 10 - 271 1.1e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccB7I CCANNNNNTGG 1 cut(s) 469
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 637
AciI CCGC 2 cut(s) 371, 637
AclWI GGATC 3 cut(s) 443, 647, 665
AcoI YGGCCR 2 cut(s) 387, 778
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 8, 318
AfiI CCNNNNNNNGG 2 cut(s) 469, 490
AgsI TTSAA 3 cut(s) 52, 94, 298
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 6 cut(s) 184, 418, 514, 546, 760, 821
AluI AGCT 6 cut(s) 184, 418, 514, 546, 760, 821
Alw21I GWGCWC 2 cut(s) 420, 829
Alw26I GTCTC 1 cut(s) 491
Alw44I GTGCAC 1 cut(s) 825
AlwI GGATC 3 cut(s) 443, 647, 665
AoxI GGCC 2 cut(s) 387, 778
ApaLI GTGCAC 1 cut(s) 825
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 701
ArsI GACNNNNNNTTYG 2 cut(s) 775, 807
AseI ATTAAT 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 481, 566
AsuC2I CCSGG 1 cut(s) 743
AvaII GGWCC 2 cut(s) 481, 566
BaeGI GKGCMC 1 cut(s) 829
BanII GRGCYC 1 cut(s) 420
Bbv12I GWGCWC 2 cut(s) 420, 829
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 7, 356
BceAI ACGGC 1 cut(s) 384
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 584, 618
BciT130I CCWGG 1 cut(s) 795
BciVI GTATCC 1 cut(s) 608
BclI TGATCA 1 cut(s) 37
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 2 cut(s) 356, 675
BfuI GTATCC 1 cut(s) 608
BisI GCNGC 2 cut(s) 123, 372
BlsI GCNGC 2 cut(s) 124, 373
Bme1390I CCNGG 2 cut(s) 743, 795
Bme18I GGWCC 2 cut(s) 481, 566
BmgT120I GGNCC 2 cut(s) 481, 566
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 743, 795
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 676
BpuEI CTTGAG 2 cut(s) 442, 544
BpuMI CCSGG 1 cut(s) 743
Bsa29I ATCGAT 2 cut(s) 177, 395
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 431, 742
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 490
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 1 cut(s) 795
BseCI ATCGAT 2 cut(s) 177, 395
BseDI CCNNGG 2 cut(s) 431, 742
BseGI GGATG 4 cut(s) 18, 40, 427, 762
BseLI CCNNNNNNNGG 2 cut(s) 469, 490
BseMI GCAATG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 2 cut(s) 389, 780
BshVI ATCGAT 2 cut(s) 177, 395
BsiHKAI GWGCWC 2 cut(s) 420, 829
BsiSI CCGG 1 cut(s) 742
BslFI GGGAC 1 cut(s) 759
BslI CCNNNNNNNGG 2 cut(s) 469, 490
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 759
BsnI GGCC 2 cut(s) 389, 780
Bsp1286I GDGCHC 2 cut(s) 420, 829
Bsp143I GATC 6 cut(s) 37, 178, 328, 435, 639, 670
BspACI CCGC 2 cut(s) 371, 637
BspANI GGCC 2 cut(s) 389, 780
BspDI ATCGAT 2 cut(s) 177, 395
BspFNI CGCG 1 cut(s) 637
BspHI TCATGA 2 cut(s) 438, 720
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 3 cut(s) 443, 647, 665
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 431, 742
BssMI GATC 6 cut(s) 37, 178, 328, 435, 639, 670
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 2 cut(s) 294, 469
Bst6I CTCTTC 3 cut(s) 489, 661, 778
BstACI GRCGYC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 147, 627
BstF5I GGATG 4 cut(s) 18, 40, 427, 762
BstFNI CGCG 1 cut(s) 637
BstKTI GATC 6 cut(s) 40, 181, 331, 438, 642, 673
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 6 cut(s) 37, 178, 328, 435, 639, 670
BstMWI GCNNNNNNNGC 2 cut(s) 424, 808
BstNI CCWGG 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 741, 793
BstSLI GKGCMC 1 cut(s) 829
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu15I ATCGAT 2 cut(s) 177, 395
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 2 cut(s) 389, 780
BsuTUI ATCGAT 2 cut(s) 177, 395
BtsCI GGATG 4 cut(s) 18, 40, 427, 762
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 1 cut(s) 827
CciI TCATGA 2 cut(s) 438, 720
Cfr13I GGNCC 2 cut(s) 481, 566
ClaI ATCGAT 2 cut(s) 177, 395
Csp6I GTAC 2 cut(s) 7, 317
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 8 cut(s) 209, 251, 361, 439, 478, 584, 721, 749
CviQI GTAC 2 cut(s) 7, 317
DdeI CTNAG 2 cut(s) 147, 627
DpnI GATC 6 cut(s) 39, 180, 330, 437, 641, 672
DpnII GATC 6 cut(s) 37, 178, 328, 435, 639, 670
EaeI YGGCCR 2 cut(s) 387, 778
Eam1104I CTCTTC 3 cut(s) 489, 661, 778
EarI CTCTTC 3 cut(s) 489, 661, 778
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 420
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 481, 566
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 8 cut(s) 212, 254, 364, 442, 481, 587, 724, 752
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 1 cut(s) 759
FatI CATG 8 cut(s) 208, 250, 360, 438, 477, 583, 720, 748
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 123, 372
FokI GGATG 4 cut(s) 25, 47, 414, 749
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 2 cut(s) 123, 372
FspBI CTAG 2 cut(s) 356, 675
GluI GCNGC 2 cut(s) 123, 372
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 676
HaeIII GGCC 2 cut(s) 389, 780
HapII CCGG 1 cut(s) 742
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 8 cut(s) 212, 254, 364, 442, 481, 587, 724, 752
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 2 cut(s) 445, 587
HpaII CCGG 1 cut(s) 742
Hpy166II GTNNAC 5 cut(s) 144, 265, 319, 649, 827
Hpy188I TCNGA 3 cut(s) 103, 551, 688
Hpy188III TCNNGA 5 cut(s) 421, 439, 655, 710, 721
Hpy8I GTNNAC 5 cut(s) 144, 265, 319, 649, 827
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 294, 469
HpyCH4IV ACGT 3 cut(s) 5, 71, 267
HpyCH4V TGCA 4 cut(s) 125, 605, 802, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 808
HpyF3I CTNAG 2 cut(s) 147, 627
HpySE526I ACGT 3 cut(s) 5, 71, 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 8 cut(s) 212, 254, 364, 442, 481, 587, 724, 752
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 6 cut(s) 37, 178, 328, 435, 639, 670
LmnI GCTCC 2 cut(s) 405, 657
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 356, 675
MaeII ACGT 3 cut(s) 5, 71, 267
MalI GATC 6 cut(s) 39, 180, 330, 437, 641, 672
MboI GATC 6 cut(s) 37, 178, 328, 435, 639, 670
MboII GAAGA 7 cut(s) 169, 205, 454, 467, 506, 678, 795
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 420, 829
MluCI AATT 3 cut(s) 198, 701, 803
MmeI TCCRAC 2 cut(s) 544, 666
MnlI CCTC 7 cut(s) 58, 247, 417, 589, 691, 749, 779
MseI TTAA 2 cut(s) 281, 835
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 1 cut(s) 742
MspR9I CCNGG 2 cut(s) 743, 795
MvaI CCWGG 1 cut(s) 795
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 2 cut(s) 424, 808
NciI CCSGG 1 cut(s) 743
NdeII GATC 6 cut(s) 37, 178, 328, 435, 639, 670
NlaIII CATG 8 cut(s) 212, 254, 364, 442, 481, 587, 724, 752
NlaIV GGNNCC 1 cut(s) 407
NmeAIII GCCGAG 1 cut(s) 439
PagI TCATGA 2 cut(s) 438, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PfeI GAWTC 2 cut(s) 445, 587
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 2 cut(s) 124, 373
PshBI ATTAAT 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 793
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 481, 566
PsuI RGATCY 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 8, 318
RsaNI GTAC 2 cut(s) 7, 317
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 281, 835
SatI GCNGC 2 cut(s) 123, 372
Sau3AI GATC 6 cut(s) 37, 178, 328, 435, 639, 670
Sau96I GGNCC 2 cut(s) 481, 566
ScrFI CCNGG 2 cut(s) 743, 795
SduI GDGCHC 2 cut(s) 420, 829
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 2 cut(s) 481, 566
SmlI CTYRAG 2 cut(s) 421, 523
SmoI CTYRAG 2 cut(s) 421, 523
Sse9I AATT 3 cut(s) 198, 701, 803
SsiI CCGC 2 cut(s) 371, 637
SspMI CTAG 2 cut(s) 356, 675
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 741, 793
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 2 cut(s) 294, 469
TaiI ACGT 3 cut(s) 8, 74, 270
TaqI TCGA 4 cut(s) 177, 331, 395, 594
TaqII GACCGA 1 cut(s) 498
TasI AATT 3 cut(s) 198, 701, 803
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 445, 587
Tru1I TTAA 2 cut(s) 281, 835
Tru9I TTAA 2 cut(s) 281, 835
TscAI CASTG 1 cut(s) 834
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 8 cut(s) 170, 225, 267, 299, 455, 600, 709, 737
TspRI CASTG 1 cut(s) 834
Van91I CCANNNNNTGG 1 cut(s) 469
VneI GTGCAC 1 cut(s) 825
VpaK11BI GGWCC 2 cut(s) 481, 566
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 2 cut(s) 356, 675
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.