Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012610

Physical Location & Seq

Genomic Coordinates Reverse (-)

17302914 .. 17304334

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGGTGTCCTCAACTCTCATCCCTGAATTTGTCAATCACCTAGTAGAAGTCCGACCTCCAATTCCGTTGTTTGGAAATGACGGAACCACAATGAGCATAACCGTGCCTGCAACCGCAATGATGGAACCATCTTCTGTATTTCGAAAATCTCATTCAAGCCAAACAGCCGCTGTCCACCGCCACCGTCGGAACACCACCAATCCTCCACCGATCCAAATGAACAAGGCACCGCCTTATGATCATTTCAAGAAGCTCCTCCTCCTCGGCGATAGTGGCGTTGGGAAGACCAGTCTACTTCTTCGATTCTCGGATATACCTACAGGGACAGACCTTAGTGTGAAGACCATCAAGATGGACAACGAATGGGTCAAACTGCAAATCTGTGACACAAACAGTCAGGAACGATTATTCAAAAAAATCACAAGAGCTTGCTACGAGGCAGCTGATGGTATTTTGTTGGTGTATGATGTTACGAATGAGTCATCATTTCTGCACGTTAGAGACTGGATTCGGAAAAACATACATTCTTCTTCTAACAATGTGAAGAAGGTACTGGTGGGGAACAAGGCGGACATGGATGATGAGAGCAAAAGGGCTGTATCAAGAGCTAGAGCTCAAACTCTTGCGGATGTGTGCGACATCATGTTCTTGGAAACCAGTGCAAAGACGAACAAGAATGTTGAAGACGTTTTCTTTGCATTAGCCTCGTGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

239

Amino Acids

26.68

Weight (kDa)

9.01

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	84 - 230	8.2e-06	ADP-ribosylation factor family
Ras	PF00071	85 - 236	4.7e-42	Ras family
Roc	PF08477	85 - 192	2.2e-14	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01280
rosa_chinensis	RchiOBHm_Chr7g0199661 RchiOBHm_Chr7g0201581
rosa_multiflora	Rmu_co8364891.1_g000001 Rmu_sc0009191.1_g000003 Rmu_sc0010180.1_g000001 Rmu_sc0037386.1_g000003 Rmu_sc0039265.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255230 Rroxscaffold_3G00256510
rosa_rugosa	Rorug07G0064800
rosa_samantha	Rh7AG180800 Rh7AG191400 Rh7BG183700 Rh7BG193700 Rh7CG202600 Rh7DG183700 Rh7DG196600
rosa_wichuraiana	Rw7G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	6 cut(s)	117, 171, 181, 233, 572, 629
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	159, 250, 415, 686
AluBI	AGCT	5 cut(s)	256, 431, 446, 611, 617
AluI	AGCT	5 cut(s)	256, 431, 446, 611, 617
Alw21I	GWGCWC	2 cut(s)	619, 716
Alw26I	GTCTC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	712
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
AsuHPI	GGTGA	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	619
BauI	CACGAG	1 cut(s)	709
BbsI	GAAGAC	3 cut(s)	293, 350, 693
Bbv12I	GWGCWC	2 cut(s)	619, 716
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	5 cut(s)	118, 139, 349, 356, 443
BcgI	CGANNNNNNTGC	1 cut(s)	690
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	44, 612
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	171, 444
BlsI	GCNGC	2 cut(s)	172, 445
BmiI	GGNNCC	3 cut(s)	88, 129, 231
BpiI	GAAGAC	3 cut(s)	293, 350, 693
Bpu14I	TTCGAA	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	4 cut(s)	291, 512, 561, 660
Bse3DI	GCAATG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	21, 586, 637
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	4 cut(s)	291, 512, 561, 660
BseRI	GAGGAG	3 cut(s)	248, 251, 254
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	619, 716
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	619, 716
Bsp143I	GATC	2 cut(s)	213, 241
BspACI	CCGC	6 cut(s)	117, 171, 181, 233, 572, 629
BspLI	GGNNCC	3 cut(s)	88, 129, 231
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	4 cut(s)	291, 512, 561, 660
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	2 cut(s)	213, 241
BssSI	CACGAG	1 cut(s)	709
Bst2BI	CACGAG	1 cut(s)	709
Bst4CI	ACNGT	3 cut(s)	106, 188, 398
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	111, 433
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	21, 586, 637
BstKTI	GATC	2 cut(s)	216, 244
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	213, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	716
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	3 cut(s)	293, 350, 693
BstXI	CCANNNNNNTGG	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	21, 586, 637
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	111, 433
CaiI	CAGNNNCTG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	2 cut(s)	577, 646
CviJI	RGCY	9 cut(s)	162, 170, 256, 431, 446, 599, 611, 617, 707
CviKI_1	RGCY	9 cut(s)	162, 170, 256, 431, 446, 599, 611, 617, 707
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	2 cut(s)	215, 243
DpnII	GATC	2 cut(s)	213, 241
EciI	GGCGGA	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	619
Eco53kI	GAGCTC	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	619
FaeI	CATG	2 cut(s)	580, 649
FaiI	YATR	7 cut(s)	101, 240, 317, 468, 524, 578, 647
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	576, 645
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	171, 444
FokI	GGATG	3 cut(s)	8, 593, 644
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	171, 444
FspBI	CTAG	2 cut(s)	44, 612
GluI	GCNGC	2 cut(s)	171, 444
Hin1II	CATG	2 cut(s)	580, 649
HinfI	GANTC	3 cut(s)	306, 482, 511
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	3 cut(s)	178, 296, 714
Hpy188I	TCNGA	4 cut(s)	56, 192, 313, 516
Hpy188III	TCNNGA	4 cut(s)	250, 352, 401, 606
Hpy8I	GTNNAC	3 cut(s)	178, 296, 714
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	3 cut(s)	106, 188, 398
HpyCH4IV	ACGT	2 cut(s)	498, 690
HpyCH4V	TGCA	6 cut(s)	113, 379, 496, 665, 701, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	498, 690
Hsp92II	CATG	2 cut(s)	580, 649
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	213, 241
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	39, 123, 304, 309, 386, 493, 542, 673
Lsp1109I	GCAGC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	44, 612
MaeII	ACGT	2 cut(s)	498, 690
MaeIII	GTNAC	2 cut(s)	386, 472
MalI	GATC	2 cut(s)	215, 243
MboI	GATC	2 cut(s)	213, 241
MboII	GAAGA	8 cut(s)	126, 293, 298, 355, 522, 525, 559, 698
MhlI	GDGCHC	2 cut(s)	619, 716
MluCI	AATT	2 cut(s)	29, 63
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	79, 170
MnlI	CCTC	8 cut(s)	22, 69, 216, 269, 272, 275, 433, 718
MseI	TTAA	1 cut(s)	718
MslI	CAYNNNNRTG	2 cut(s)	104, 353
MspA1I	CMGCKG	2 cut(s)	173, 446
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	213, 241
NlaIII	CATG	2 cut(s)	580, 649
NlaIV	GGNNCC	3 cut(s)	88, 129, 231
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	306, 511
PkrI	GCNGC	2 cut(s)	172, 445
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	88, 129, 231
PstNI	CAGNNNCTG	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	2 cut(s)	104, 353
SacI	GAGCTC	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	718
SatI	GCNGC	2 cut(s)	171, 444
Sau3AI	GATC	2 cut(s)	213, 241
SchI	GAGTC	1 cut(s)	491
SduI	GDGCHC	2 cut(s)	619, 716
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	104, 353
Sse9I	AATT	2 cut(s)	29, 63
SsiI	CCGC	6 cut(s)	117, 171, 181, 233, 572, 629
SspMI	CTAG	2 cut(s)	44, 612
SstI	GAGCTC	1 cut(s)	619
TaaI	ACNGT	3 cut(s)	106, 188, 398
TaiI	ACGT	2 cut(s)	501, 693
TaqI	TCGA	2 cut(s)	145, 304
TasI	AATT	2 cut(s)	29, 63
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	306, 511
Tru1I	TTAA	1 cut(s)	718
Tru9I	TTAA	1 cut(s)	718
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	17, 236
TspGWI	ACGGA	2 cut(s)	57, 99
TspRI	CASTG	1 cut(s)	667
VneI	GTGCAC	1 cut(s)	712
XapI	RAATTY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	295
XspI	CTAG	2 cut(s)	44, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.