Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012610

Physical Location & Seq

Genomic Coordinates Forward (+)

50881986 .. 50882483

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTGTACCAACCCACAATCATTTCAGGAAGTTTCTCCTCCTCGGCGACAATGGCGTTGGGAAGACCAGCCTGTTTCTTCGATTCTTGGATATACCTATAGGGATAGATCTGAGTTTAAAAACCATTGAGATGGACGATGAATGGGTCAAATTGCAAATCTGTGACACAACCGGTCGGCAACGGTTATACAAAAAAGTCACAAAAGCTTGCTACCAGGCAGCTGATGGTATTTTGTTGGTGTATGATGTCACAAATGAGTTATCATTCGAGCACGTCAAGGAATGGATTCGTAAAAACATACATTCTTGTTCTAACAATGTGAACAAGATACTGGTGGGGAACAAGGCGGACATGGATGACGAGAGCAAAAGGGTTGTGCCGAGGTGGAGAGGTCAAGCTCTTGCGGATGCGTGCGGCATCATGTTCTTGGAAACCAGTGCAAAGACTAACAAGAATGTTGAAGACGTTTTCTTTGCATTAGCCTCAAGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

7.68

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	11 - 164	5.6e-43	Ras family
Roc	PF08477	11 - 118	2.4e-15	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	35 - 162	7.1e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01280
rosa_chinensis	RchiOBHm_Chr7g0199661 RchiOBHm_Chr7g0201581
rosa_multiflora	Rmu_co8364891.1_g000001 Rmu_sc0009191.1_g000003 Rmu_sc0010180.1_g000001 Rmu_sc0037386.1_g000003 Rmu_sc0039265.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255230 Rroxscaffold_3G00256510
rosa_rugosa	Rorug07G0064800
rosa_samantha	Rh7AG180800 Rh7AG191400 Rh7BG183700 Rh7BG193700 Rh7CG202600 Rh7DG183700 Rh7DG196600
rosa_wichuraiana	Rw7G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	350, 407, 417
AfaI	GTAC	1 cut(s)	9
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	464
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	209, 224, 401
AluI	AGCT	3 cut(s)	209, 224, 401
Alw21I	GWGCWC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AsiGI	ACCGGT	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	71, 471
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	127, 221
BciT130I	CCWGG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	2 cut(s)	222, 418
BlsI	GCNGC	2 cut(s)	223, 419
Bme1390I	CCNGG	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	400, 429
BpiI	GAAGAC	2 cut(s)	71, 471
BpuEI	CTTGAG	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	43, 383
BsaWI	WCCGGW	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	339, 438
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	43, 383
BseGI	GGATG	2 cut(s)	364, 415
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	339, 438
BseRI	GAGGAG	2 cut(s)	29, 32
BseXI	GCAGC	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	178
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	3 cut(s)	350, 407, 417
BspCNI	CTCAG	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	339, 438
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	43, 383
BssMI	GATC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	211, 415
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	364, 415
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	71, 471
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	364, 415
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	211, 415
Cfr10I	RCCGGY	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	8
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	2 cut(s)	355, 424
CviJI	RGCY	6 cut(s)	5, 72, 209, 224, 401, 485
CviKI_1	RGCY	6 cut(s)	5, 72, 209, 224, 401, 485
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraI	TTTAAA	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	358, 427
FaiI	YATR	7 cut(s)	95, 101, 190, 246, 302, 356, 425
FatI	CATG	2 cut(s)	354, 423
Fnu4HI	GCNGC	2 cut(s)	222, 418
FokI	GGATG	2 cut(s)	371, 422
Fsp4HI	GCNGC	2 cut(s)	222, 418
GluI	GCNGC	2 cut(s)	222, 418
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	2 cut(s)	358, 427
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	84, 289
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	276, 468
HpyCH4V	TGCA	3 cut(s)	157, 443, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	276, 468
Hsp92II	CATG	2 cut(s)	358, 427
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	13, 82, 86, 187, 203, 230, 320, 451
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	400, 429
MaeII	ACGT	2 cut(s)	276, 468
MaeIII	GTNAC	3 cut(s)	164, 199, 250
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	71, 76, 476
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	5 cut(s)	50, 53, 378, 386, 496
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	119, 496
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	358, 427
NmeAIII	GCCGAG	2 cut(s)	24, 408
NmuCI	GTSAC	3 cut(s)	164, 199, 250
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	84, 289
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	223, 419
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	119, 496
SatI	GCNGC	2 cut(s)	222, 418
Sau3AI	GATC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	8 cut(s)	100, 211, 226, 279, 389, 397, 403, 471
SfaNI	GCATC	2 cut(s)	400, 429
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	3 cut(s)	350, 407, 417
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	279, 471
TaqI	TCGA	2 cut(s)	82, 270
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	84, 289
Tru1I	TTAA	2 cut(s)	119, 496
Tru9I	TTAA	2 cut(s)	119, 496
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	3 cut(s)	164, 199, 250
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	3 cut(s)	164, 199, 250
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.