Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012610

Physical Location & Seq

Genomic Coordinates Reverse (-)

14732704 .. 14733248

Gene Structure 545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCAGTACCAACCCACAATCATTTCAGGAAGCTTCTCCTCCTCGGCGACAATGGCGTTGGGAAGACCAGCCTGTTTCTTCGATTCTTGGATATACCTATAGGGATAGATCTGAGTTTAAAAACCATTGAGATGGACGATGAATGGGTCAAATTGCAAATCTGTGACACAACCGGCCGGCAACGGTTATACAAAAAAGTCACAAGAGTTTGCTACCTGCAGGCAGCTGATGGTATTTTGTTGGTGTATGATGTCACAAATGAGTTATCATTCGAGCACGTCAAGGAATGGATTCGTAAAAACATATATTCTTGTTCTAACAATGTGAACAAGATACTGGTGGGGAACAAGGTGGACATGGATGATGAGAGCAAAAGGATTGTGCCGAGGTGTAGAGGTCAAGCTCTTGCGGATGCGTGCGGCATCATGTTCTTGGAATCCACAGATTTCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

151

Amino Acids

17.3

Weight (kDa)

7.63

Isoelectric Point (pI)

24.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	11 - 147	1.4e-32	Ras family
Roc	PF08477	11 - 119	1.4e-15	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01280
rosa_chinensis	RchiOBHm_Chr7g0199661 RchiOBHm_Chr7g0201581
rosa_multiflora	Rmu_co8364891.1_g000001 Rmu_sc0009191.1_g000003 Rmu_sc0010180.1_g000001 Rmu_sc0037386.1_g000003 Rmu_sc0039265.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255230 Rroxscaffold_3G00256510
rosa_rugosa	Rorug07G0064800
rosa_samantha	Rh7AG180800 Rh7AG191400 Rh7BG183700 Rh7BG193700 Rh7CG202600 Rh7DG183700 Rh7DG196600
rosa_wichuraiana	Rw7G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	2 cut(s)	410, 420
AcoI	YGGCCR	1 cut(s)	175
AfaI	GTAC	1 cut(s)	9
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	3 cut(s)	34, 227, 404
AluI	AGCT	3 cut(s)	34, 227, 404
Alw21I	GWGCWC	1 cut(s)	279
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	2 cut(s)	127, 224
BfmI	CTRYAG	2 cut(s)	99, 218
BfuAI	ACCTGC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	2 cut(s)	225, 421
BlsI	GCNGC	2 cut(s)	226, 422
BmgBI	CACGTC	1 cut(s)	280
BmsI	GCATC	2 cut(s)	403, 432
BpiI	GAAGAC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	43, 386
Bse118I	RCCGGY	2 cut(s)	173, 177
Bse1I	ACTGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	43, 386
BseGI	GGATG	2 cut(s)	367, 418
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	2 cut(s)	29, 32
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	174, 178
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	2 cut(s)	410, 420
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	173, 177
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	2 cut(s)	173, 177
BssECI	CCNNGG	2 cut(s)	43, 386
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	179, 222, 418
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	367, 418
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	99, 218
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	109
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	367, 418
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	179, 222, 418
Cfr10I	RCCGGY	2 cut(s)	173, 177
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	2 cut(s)	358, 427
CviJI	RGCY	5 cut(s)	34, 72, 177, 227, 404
CviKI_1	RGCY	5 cut(s)	34, 72, 177, 227, 404
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	175
Eco52I	CGGCCG	1 cut(s)	175
FaeI	CATG	2 cut(s)	361, 430
FaiI	YATR	8 cut(s)	95, 101, 190, 249, 305, 307, 359, 428
FatI	CATG	2 cut(s)	357, 426
Fnu4HI	GCNGC	2 cut(s)	225, 421
FokI	GGATG	2 cut(s)	374, 425
Fsp4HI	GCNGC	2 cut(s)	225, 421
GluI	GCNGC	2 cut(s)	225, 421
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	174, 178
Hin1II	CATG	2 cut(s)	361, 430
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	84, 292, 437
HpaII	CCGG	2 cut(s)	174, 178
Hpy166II	GTNNAC	2 cut(s)	328, 355
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	328, 355
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	157, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	361, 430
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	13, 82, 86, 187, 191, 206, 230, 323
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	403, 432
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	164, 199, 253
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	71, 76
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	4 cut(s)	50, 53, 381, 389
MroNI	GCCGGC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	174, 178
MwoI	GCNNNNNNNGC	1 cut(s)	54
NaeI	GCCGGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	109
NgoMIV	GCCGGC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	361, 430
NmeAIII	GCCGAG	2 cut(s)	24, 411
NmuCI	GTSAC	3 cut(s)	164, 199, 253
PdiI	GCCGGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	84, 292, 437
PkrI	GCNGC	2 cut(s)	226, 422
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	225, 421
Sau3AI	GATC	1 cut(s)	109
SbfI	CCTGCAGG	1 cut(s)	222
SdaI	CCTGCAGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	36, 100, 219, 229, 282, 354, 392, 400, 406
SfaNI	GCATC	2 cut(s)	403, 432
SfcI	CTRYAG	2 cut(s)	99, 218
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse8387I	CCTGCAGG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	410, 420
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	82, 273
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	84, 292, 437
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseFI	GTSAC	3 cut(s)	164, 199, 253
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	3 cut(s)	164, 199, 253
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.