FvH4_5g02040

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008951
Physical Location & Seq
Forward (+)
1273841 .. 1277544
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02040.t1

Sequence Viewer

Length: 1452 bp
ATGTTGCGTAGATCTCGCTTTGTCAGACTGTTTCAGCTTCAAGGTGTAAGAAGTTGCCAATCGTACTCTATCTTCTTCTTCGGTTTACTAACCATTGCAGCCATTCTATCTTCTTTCTGTGTTCACCTTTCGAGTGACACCACTGTTCAGATTGATCCCTTCTTCACAAACCAAAGACAAACGTGTCCAACAAACTACTCTACAGCCTTTAGTACTGATCGTCTTGACACATTGTCGAACACTACATGCCCGGACTACTTCCGGTTCATCCACGAAGATCTAAAGCCATGGAAAACCACAGGAATTACAAGAACCATGGTGGAGAAAGCAAAGAAGACGGCGCACTTTCGGCTAGTGATTGTTGATGGAAAGGCTTATGTTGAAAATTACAAGAAGTCCATACAGACAAGGGATGTGTTTACCATATGGGGTATTTTGCAGCTTCTTAGGAGGTACCCCGGGAAAGTGCCTGACTTGGAGCTGATGTTTGACTGTAATGACCGTCCGGTCATCCGGGACTACTGGTGGAATCCGACGCAGGTGCCACCGCTGTTCCGGTACTGTGGTGATAGATGGACAAAAGACATCGTGTTTCCTGATTGGTCTTTCTGGGGCTGGGCTGAGATAAACATGAAACCATGGGAAAGTGTGTTGAAAGATGTCAAGAAAGGTAACGAGAGGAGCAAATGGATGGAAAGAGAACCTTATGCATACTGGAAAGGGAACCCATTAGTAGCACAAAAAAGGAGAGATCTCCTCAAATGCAACGTCTCGAGCACAAAGGACTGGAATGCTCGCTTGTTTATCCAGGACTGGATCCTTGAATCTCTACAGGGCTTCAAGCAATCAGATGTAGCAAGCCAATGCACACATAGGTACAAGATATACATTGAGGGAACTGCATGGTCTGTTAGTGAGAAGTACATACTGGCCTGTGATTCAGTAACATTGCTGGTAAAACCAAAATACTATGATTTCTTCACAAGAAGTCTACAACCAATGCACCATTACTGGCCTATAAGGAATGACAACAAATGCAAGTCCATTAAGTTTGCTGTAGATTGGGGAAACAATCATAAACAACAGGCACAAGCAATTGGGAAAGCAGCAAGCAGCTTCATTCAGCAAGAACTGAAGATGGACTATGTGTACGGTTACATGTTTCATCTACTAAATGAATATGCCAAACTATCCAAATTTGAGCCAAGAGTACCGAAAGGAGCTACACTTATGTGCACAGAGACACTCGCTTTCGCTGCAGATGAGTCGGAGAAAAAGTTCATGACAGAATCATTGGTGAAGAGTCCGTCCATGACAAACCCCTGCACCATGCCGCCTTCCTATGAACCCCAAGATCTTGCAAACTTATATAGGAATAACATCAATTCAATTAAACAAGTAGAAAAATGGGAAGATAAGTACTGGGAGAGTATCCATAATAAGCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

484

Amino Acids

56.99

Weight (kDa)

9.16

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 80 - 471 2.9e-185 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
AasI GACNNNNNNGTC 2 cut(s) 183, 506
Acc36I ACCTGC 1 cut(s) 529
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 2 cut(s) 453, 541
AccI GTMKAC 1 cut(s) 991
AciI CCGC 2 cut(s) 548, 1334
AclWI GGATC 3 cut(s) 149, 811, 824
AcsI RAATTY 1 cut(s) 1196
AcuI CTGAAG 1 cut(s) 1154
AfaI GTAC 9 cut(s) 65, 214, 455, 560, 878, 923, 1151, 1212, 1421
AflIII ACRYGT 2 cut(s) 182, 1158
AgsI TTSAA 6 cut(s) 41, 383, 655, 824, 841, 1389
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 807
AleI CACNNNNGTG 1 cut(s) 1231
AloI GAACNNNNNNTCC 2 cut(s) 1262, 1294
AluBI AGCT 5 cut(s) 37, 442, 481, 1116, 1223
AluI AGCT 5 cut(s) 37, 442, 481, 1116, 1223
Alw21I GWGCWC 2 cut(s) 779, 1238
Alw26I GTCTC 2 cut(s) 775, 1235
Alw44I GTGCAC 1 cut(s) 1234
AlwI GGATC 3 cut(s) 149, 811, 824
Ama87I CYCGRG 2 cut(s) 458, 772
AoxI GGCC 2 cut(s) 930, 1013
ApaLI GTGCAC 1 cut(s) 1234
ApeKI GCWGC 6 cut(s) 98, 439, 1106, 1113, 1256, 1444
ApoI RAATTY 1 cut(s) 1196
ArsI GACNNNNNNTTYG 2 cut(s) 753, 785
Asp700I GAANNNNTTC 1 cut(s) 1277
Asp718I GGTACC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 343
AsuC2I CCSGG 4 cut(s) 251, 459, 460, 515
AsuHPI GGTGA 3 cut(s) 116, 578, 1309
AvaI CYCGRG 2 cut(s) 458, 772
BaeGI GKGCMC 1 cut(s) 1238
BaeI ACNNNNGTAYC 2 cut(s) 550, 583
BamHI GGATCC 1 cut(s) 816
BanI GGYRCC 2 cut(s) 453, 541
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 779, 1238
BbvI GCAGC 5 cut(s) 110, 451, 1118, 1125, 1243
BccI CCATC 4 cut(s) 359, 567, 685, 1132
BceAI ACGGC 1 cut(s) 354
BcgI CGANNNNNNTGC 4 cut(s) 523, 557, 1248, 1282
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 1 cut(s) 1442
BcnI CCSGG 4 cut(s) 251, 459, 460, 515
BcoDI GTCTC 2 cut(s) 775, 1235
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 4 cut(s) 201, 830, 1056, 1257
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 1 cut(s) 1442
BglII AGATCT 4 cut(s) 11, 277, 751, 1354
BisI GCNGC 7 cut(s) 99, 440, 1107, 1114, 1257, 1334, 1445
BlsI GCNGC 7 cut(s) 100, 441, 1108, 1115, 1258, 1335, 1446
BmcAI AGTACT 2 cut(s) 214, 1421
Bme1390I CCNGG 5 cut(s) 251, 459, 460, 515, 809
BmeRI GACNNNNNGTC 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 458, 772
BmiI GGNNCC 4 cut(s) 455, 543, 725, 818
BmrFI CCNGG 5 cut(s) 251, 459, 460, 515, 809
BmrI ACTGGG 1 cut(s) 1432
BmuI ACTGGG 1 cut(s) 1432
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 741, 773
BpuMI CCSGG 4 cut(s) 251, 459, 460, 515
BsaJI CCNNGG 5 cut(s) 287, 315, 457, 458, 638
BsaWI WCCGGW 3 cut(s) 261, 505, 555
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 1262, 1292
Bse1I ACTGG 7 cut(s) 527, 719, 791, 818, 933, 1016, 1427
Bse3DI GCAATG 2 cut(s) 93, 947
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 5 cut(s) 287, 315, 457, 458, 638
BseGI GGATG 4 cut(s) 267, 418, 510, 696
BseMI GCAATG 2 cut(s) 93, 947
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 7 cut(s) 527, 719, 791, 818, 933, 1016, 1427
BseRI GAGGAG 2 cut(s) 694, 746
BseSI GKGCMC 1 cut(s) 1238
BseXI GCAGC 5 cut(s) 110, 451, 1118, 1125, 1243
BseYI CCCAGC 1 cut(s) 615
BsgI GTGCAG 1 cut(s) 1309
BshFI GGCC 2 cut(s) 932, 1015
BshNI GGYRCC 2 cut(s) 453, 541
BsiHKAI GWGCWC 2 cut(s) 779, 1238
BsiHKCI CYCGRG 2 cut(s) 458, 772
BsiSI CCGG 6 cut(s) 251, 262, 459, 506, 514, 556
BslFI GGGAC 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 775, 1235
BsmBI CGTCTC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 530
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 2 cut(s) 932, 1015
BsoBI CYCGRG 2 cut(s) 458, 772
Bsp1286I GDGCHC 2 cut(s) 779, 1238
Bsp143I GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
Bsp19I CCATGG 3 cut(s) 287, 315, 638
BspACI CCGC 2 cut(s) 548, 1334
BspANI GGCC 2 cut(s) 932, 1015
BspCNI CTCAG 1 cut(s) 613
BspHI TCATGA 1 cut(s) 1281
BspLI GGNNCC 4 cut(s) 455, 543, 725, 818
BspMAI CTGCAG 1 cut(s) 1261
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 3 cut(s) 149, 811, 824
BspT107I GGYRCC 2 cut(s) 453, 541
BsrDI GCAATG 2 cut(s) 93, 947
BsrI ACTGG 7 cut(s) 527, 719, 791, 818, 933, 1016, 1427
BssECI CCNNGG 5 cut(s) 287, 315, 457, 458, 638
BssMI GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
BssT1I CCWWGG 3 cut(s) 287, 315, 638
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 6 cut(s) 30, 145, 494, 503, 563, 1154
Bst6I CTCTTC 1 cut(s) 1295
BstC8I GCNNGC 3 cut(s) 796, 859, 1111
BstDEI CTNAG 2 cut(s) 446, 621
BstDSI CCRYGG 3 cut(s) 287, 315, 638
BstF5I GGATG 4 cut(s) 267, 418, 510, 696
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 7 cut(s) 14, 157, 220, 280, 754, 819, 1357
BstMAI GTCTC 2 cut(s) 775, 1235
BstMBI GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
BstMWI GCNNNNNNNGC 2 cut(s) 349, 1256
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 2 cut(s) 249, 1162
BstSCI CCNGG 5 cut(s) 249, 457, 458, 513, 807
BstSFI CTRYAG 4 cut(s) 201, 830, 1056, 1257
BstSLI GKGCMC 1 cut(s) 1238
BstV1I GCAGC 5 cut(s) 110, 451, 1118, 1125, 1243
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 5 cut(s) 11, 277, 751, 816, 1354
BstYI RGATCY 5 cut(s) 11, 277, 751, 816, 1354
BsuI GTATCC 1 cut(s) 1442
BsuRI GGCC 2 cut(s) 932, 1015
BtgI CCRYGG 3 cut(s) 287, 315, 638
BtsCI GGATG 4 cut(s) 267, 418, 510, 696
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 796, 859, 1111
CciI TCATGA 1 cut(s) 1281
CfoI GCGC 1 cut(s) 343
Cfr9I CCCGGG 1 cut(s) 458
CseI GACGC 1 cut(s) 544
Csp6I GTAC 9 cut(s) 64, 213, 454, 559, 877, 922, 1150, 1211, 1420
CviQI GTAC 9 cut(s) 64, 213, 454, 559, 877, 922, 1150, 1211, 1420
DdeI CTNAG 2 cut(s) 446, 621
DpnI GATC 7 cut(s) 13, 156, 219, 279, 753, 818, 1356
DpnII GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
DrdI GACNNNNNNGTC 2 cut(s) 183, 506
DriI GACNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 2 cut(s) 183, 506
Eam1104I CTCTTC 1 cut(s) 1295
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 1295
Eco130I CCWWGG 3 cut(s) 287, 315, 638
Eco57I CTGAAG 1 cut(s) 1154
Eco88I CYCGRG 2 cut(s) 458, 772
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 3 cut(s) 287, 315, 638
EcoT22I ATGCAT 1 cut(s) 712
ErhI CCWWGG 3 cut(s) 287, 315, 638
Esp3I CGTCTC 1 cut(s) 775
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FaqI GGGAC 1 cut(s) 530
FauNDI CATATG 1 cut(s) 425
FblI GTMKAC 1 cut(s) 991
Fnu4HI GCNGC 7 cut(s) 99, 440, 1107, 1114, 1257, 1334, 1445
FokI GGATG 4 cut(s) 254, 425, 497, 703
Fsp4HI GCNGC 7 cut(s) 99, 440, 1107, 1114, 1257, 1334, 1445
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 342
GluI GCNGC 7 cut(s) 99, 440, 1107, 1114, 1257, 1334, 1445
GsaI CCCAGC 1 cut(s) 619
HaeIII GGCC 2 cut(s) 932, 1015
HapII CCGG 6 cut(s) 251, 262, 459, 506, 514, 556
HgaI GACGC 1 cut(s) 544
HhaI GCGC 1 cut(s) 343
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 6 cut(s) 529, 824, 938, 1265, 1289, 1303
HpaII CCGG 6 cut(s) 251, 262, 459, 506, 514, 556
HphI GGTGA 3 cut(s) 116, 578, 1309
Hpy166II GTNNAC 6 cut(s) 86, 124, 420, 992, 1150, 1236
Hpy188I TCNGA 5 cut(s) 26, 150, 534, 850, 1270
Hpy188III TCNNGA 5 cut(s) 224, 596, 664, 772, 1282
Hpy8I GTNNAC 6 cut(s) 86, 124, 420, 992, 1150, 1236
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 2 cut(s) 169, 1347
HpyCH4III ACNGT 6 cut(s) 30, 145, 494, 503, 563, 1154
HpyCH4IV ACGT 2 cut(s) 182, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 1256
HpyF3I CTNAG 2 cut(s) 446, 621
HpySE526I ACGT 2 cut(s) 182, 768
HspAI GCGC 1 cut(s) 341
KpnI GGTACC 1 cut(s) 457
Kzo9I GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
LmnI GCTCC 3 cut(s) 478, 681, 1220
Lsp1109I GCAGC 5 cut(s) 110, 451, 1118, 1125, 1243
MaeI CTAG 1 cut(s) 353
MaeII ACGT 2 cut(s) 182, 768
MaeIII GTNAC 4 cut(s) 134, 671, 943, 1154
MalI GATC 7 cut(s) 13, 156, 219, 279, 753, 818, 1356
MboI GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 5 cut(s) 11, 277, 751, 816, 1354
MhlI GDGCHC 2 cut(s) 779, 1238
MluCI AATT 6 cut(s) 303, 385, 1095, 1196, 1384, 1389
MlyI GAGTC 2 cut(s) 1274, 1312
MmeI TCCRAC 3 cut(s) 212, 557, 1248
MnlI CCTC 4 cut(s) 444, 672, 767, 886
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 1277
MseI TTAA 2 cut(s) 1047, 1392
MslI CAYNNNNRTG 1 cut(s) 1231
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 6 cut(s) 251, 262, 459, 506, 514, 556
MspR9I CCNGG 5 cut(s) 251, 459, 460, 515, 809
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 809
MwoI GCNNNNNNNGC 2 cut(s) 349, 1256
NciI CCSGG 4 cut(s) 251, 459, 460, 515
NcoI CCATGG 3 cut(s) 287, 315, 638
NdeI CATATG 1 cut(s) 425
NdeII GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
NlaIV GGNNCC 4 cut(s) 455, 543, 725, 818
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 2 cut(s) 249, 1162
OliI CACNNNNGTG 1 cut(s) 1231
PaeR7I CTCGAG 1 cut(s) 772
PagI TCATGA 1 cut(s) 1281
PaqCI CACCTGC 1 cut(s) 529
PciI ACATGT 1 cut(s) 1158
PctI GAATGC 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 1277
PfeI GAWTC 4 cut(s) 529, 824, 938, 1289
PfoI TCCNGGA 2 cut(s) 513, 807
PkrI GCNGC 7 cut(s) 100, 441, 1108, 1115, 1258, 1335, 1446
PleI GAGTC 2 cut(s) 1273, 1311
PpsI GAGTC 2 cut(s) 1273, 1311
PscI ACATGT 1 cut(s) 1158
Psp6I CCWGG 1 cut(s) 807
PspFI CCCAGC 1 cut(s) 615
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 4 cut(s) 455, 543, 725, 818
PstI CTGCAG 1 cut(s) 1261
PsuI RGATCY 5 cut(s) 11, 277, 751, 816, 1354
RsaI GTAC 9 cut(s) 65, 214, 455, 560, 878, 923, 1151, 1212, 1421
RsaNI GTAC 9 cut(s) 64, 213, 454, 559, 877, 922, 1150, 1211, 1420
RseI CAYNNNNRTG 1 cut(s) 1231
SaqAI TTAA 2 cut(s) 1047, 1392
SatI GCNGC 7 cut(s) 99, 440, 1107, 1114, 1257, 1334, 1445
Sau3AI GATC 7 cut(s) 11, 154, 217, 277, 751, 816, 1354
ScaI AGTACT 2 cut(s) 214, 1421
SchI GAGTC 2 cut(s) 1274, 1312
ScrFI CCNGG 5 cut(s) 251, 459, 460, 515, 809
SduI GDGCHC 2 cut(s) 779, 1238
SfcI CTRYAG 4 cut(s) 201, 830, 1056, 1257
Sfr274I CTCGAG 1 cut(s) 772
SlaI CTCGAG 1 cut(s) 772
SmaI CCCGGG 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 1231
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
Sse9I AATT 6 cut(s) 303, 385, 1095, 1196, 1384, 1389
SsiI CCGC 2 cut(s) 548, 1334
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 5 cut(s) 249, 457, 458, 513, 807
StyI CCWWGG 3 cut(s) 287, 315, 638
TaaI ACNGT 6 cut(s) 30, 145, 494, 503, 563, 1154
TaiI ACGT 2 cut(s) 185, 771
TaqI TCGA 3 cut(s) 131, 236, 773
TasI AATT 6 cut(s) 303, 385, 1095, 1196, 1384, 1389
TatI WGTACW 3 cut(s) 212, 921, 1419
TauI GCSGC 1 cut(s) 1336
TfiI GAWTC 4 cut(s) 529, 824, 938, 1289
Tru1I TTAA 2 cut(s) 1047, 1392
Tru9I TTAA 2 cut(s) 1047, 1392
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 6 cut(s) 98, 439, 1106, 1113, 1256, 1444
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 7 cut(s) 256, 647, 1108, 1154, 1191, 1270, 1359
TspGWI ACGGA 1 cut(s) 1296
TspMI CCCGGG 1 cut(s) 458
TspRI CASTG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 1234
XapI RAATTY 1 cut(s) 1196
XceI RCATGY 2 cut(s) 249, 1162
XhoI CTCGAG 1 cut(s) 772
XmaI CCCGGG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 991
XmnI GAANNNNTTC 1 cut(s) 1277
XspI CTAG 1 cut(s) 353
ZrmI AGTACT 2 cut(s) 214, 1421
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.