Rh7DG172400

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008951
Physical Location & Seq
Reverse (-)
15695536 .. 15699462
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG172400.1

Sequence Viewer

Length: 1407 bp
ATGCAGTGGACTTTTCAGATTGATCATTCTACAAACCAAACAATAGTGATCAACGACAAGTATGAGATAACCCCCAAAATAATCGAGTTTCCACTCAACTGTTCTATCGGCATCAATCAAACACAAACGTGTCCAACAAATTACCCTATAGCCTTTACTAGTGATCGTCTTGACCCATCGTCAAACGGTACATGCCCGGACTATTTCCGGTTTATCCACGAAGATCTAAAGCCATGGAGAACCACAGGAATCACAAGGGACATGGTGGAGAGGGGAAAGAAGACGGCACATTTTCGGCTAGTGATTGTTAAAGGCAAGGCTTATATTGACAGGTACAAGAAGTCCATACAGACAAGGGATATGTTTACCATATGGGGTATTTTGCAGCTTCTTAGGAGGTACCCCGGGAAAGTACCTGACTTGGAGCTGATGTTTGACTGTGATGACCTTCCGGTTATCCGATCACGGGACTACCGGGGACAGAACTCGACGCAGGTGCCACCGCTGTTCCGGTACTGTGGTGATAGATGGACAAAAGACATTGTGTTCCCTGATTGGTCTTTCTGGGGTTGGGCTGAGATAAACATAAAACCGTGGGGAAGTTTGTTGAAAGATGTGAAGAAAGGTAACGAGAGGAGCAAATGGATGGAAAGAGAACCTTATGCATACTGGAAAGGGAACCCCTTTGTAGCTGAATCAAGGAGAGACCTCCTCAAATGCAACGTCTCGGATACACAGGATTGGAATGCTCGCTTATTCATCCAGGACTGGATCCTTGAATCTCAACAAGGCTTCAAGCATTCAGATGTAACAAACCAATGCACACATAGGTATAAGATATATATTGAGGGCTTTGCATGGTCTGTTAGTGAGAAGTACATTCTGGCCTGTGATTCAGTAACATTCCTGGTAAAACCACACTACTATGATTTCTTCACAAGAAGTCTACGACCAGTGCACCATTACTGGCCTATAAGGAATGATAACAAATGCAAATCCATCAAGTTTGCTGTAGATTGGGGAAACAATCACAAACAAAAGGCACAAGCAATTGGGAAAGCAGCAAGCGACTTCATTCAGCAAGAACTGAAGATGGACTATGTGTATGATTACATGTTTCATCTACTAAATGAATATGCCAAACTCTCCAAATTTGAGCCAAGAATACCTGAAGGAGCTACACATTTGTGCGCAGAGACTCTCGCTTGCCCTGCAGATGAGTCAGAGAAAAAGTTCATGACCGAGTCGTTGGTGAAGAGTCCGTCGATGACAAACCCCTGCACCATGCCACCTCCCTATGAACCCAAAGATCTTGGAAACTTTTATAGGAATAATATCAATTTAATTAAACAAGTAGAAAAGTGGGAAGATAAGTACTGGGATAGTATCCATAATAAGCAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

468

Amino Acids

55.4

Weight (kDa)

8.62

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 61 - 456 6.8e-194 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
Acc16I TGCGCA 1 cut(s) 1192
Acc36I ACCTGC 1 cut(s) 484
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 2 cut(s) 399, 496
AccI GTMKAC 1 cut(s) 946
AciI CCGC 1 cut(s) 503
AclWI GGATC 2 cut(s) 766, 779
AcsI RAATTY 1 cut(s) 1151
AcuI CTGAAG 2 cut(s) 1109, 1191
AfaI GTAC 7 cut(s) 190, 335, 401, 414, 515, 878, 1376
AfiI CCNNNNNNNGG 1 cut(s) 466
AflIII ACRYGT 2 cut(s) 128, 1113
AgsI TTSAA 3 cut(s) 610, 779, 796
AhdI GACNNNNNGTC 1 cut(s) 178
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 2 cut(s) 762, 906
AleI CACNNNNGTG 2 cut(s) 127, 1186
AluBI AGCT 4 cut(s) 388, 427, 692, 1178
AluI AGCT 4 cut(s) 388, 427, 692, 1178
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 3 cut(s) 699, 730, 1190
Alw44I GTGCAC 1 cut(s) 956
AlwI GGATC 2 cut(s) 766, 779
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 2 cut(s) 885, 968
ApaLI GTGCAC 1 cut(s) 956
ApeKI GCWGC 3 cut(s) 385, 1061, 1399
ApoI RAATTY 1 cut(s) 1151
ArsI GACNNNNNNTTYG 2 cut(s) 708, 740
Asp700I GAANNNNTTC 1 cut(s) 1232
Asp718I GGTACC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 1193
AsuC2I CCSGG 4 cut(s) 197, 405, 406, 476
AsuHPI GGTGA 2 cut(s) 533, 1264
AvaI CYCGRG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 960
BaeI ACNNNNGTAYC 2 cut(s) 505, 538
BamHI GGATCC 1 cut(s) 771
BanI GGYRCC 2 cut(s) 399, 496
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 960
BbvI GCAGC 2 cut(s) 397, 1073
BccI CCATC 5 cut(s) 184, 522, 640, 1007, 1087
BceAI ACGGC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 2 cut(s) 764, 908
BciVI GTATCC 2 cut(s) 724, 1397
BclI TGATCA 2 cut(s) 22, 48
BcnI CCSGG 4 cut(s) 197, 405, 406, 476
BcoDI GTCTC 3 cut(s) 699, 730, 1190
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 159, 299
BfmI CTRYAG 3 cut(s) 147, 1011, 1212
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 2 cut(s) 724, 1397
BglII AGATCT 2 cut(s) 223, 1309
BisI GCNGC 3 cut(s) 386, 1062, 1400
BlsI GCNGC 3 cut(s) 387, 1063, 1401
BmcAI AGTACT 1 cut(s) 1376
Bme1390I CCNGG 6 cut(s) 197, 405, 406, 476, 764, 908
BmeRI GACNNNNNGTC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 404
BmiI GGNNCC 4 cut(s) 401, 498, 680, 773
BmrFI CCNGG 6 cut(s) 197, 405, 406, 476, 764, 908
BmrI ACTGGG 1 cut(s) 1387
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 1387
BpiI GAAGAC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpuMI CCSGG 4 cut(s) 197, 405, 406, 476
BsaI GGTCTC 1 cut(s) 699
BsaJI CCNNGG 5 cut(s) 233, 403, 404, 475, 593
BsaWI WCCGGW 3 cut(s) 207, 451, 510
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 5 cut(s) 674, 773, 953, 971, 1382
BseBI CCWGG 2 cut(s) 764, 908
BseDI CCNNGG 5 cut(s) 233, 403, 404, 475, 593
BseGI GGATG 2 cut(s) 651, 759
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 5 cut(s) 674, 773, 953, 971, 1382
BseRI GAGGAG 2 cut(s) 649, 701
BseSI GKGCMC 1 cut(s) 960
BseXI GCAGC 2 cut(s) 397, 1073
BsgI GTGCAG 1 cut(s) 1264
BshFI GGCC 2 cut(s) 887, 970
BshNI GGYRCC 2 cut(s) 399, 496
BsiHKAI GWGCWC 1 cut(s) 960
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 6 cut(s) 197, 208, 405, 452, 475, 511
BslFI GGGAC 3 cut(s) 272, 482, 492
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 3 cut(s) 699, 730, 1190
BsmBI CGTCTC 1 cut(s) 730
BsmFI GGGAC 3 cut(s) 272, 482, 492
BsmI GAATGC 2 cut(s) 751, 799
BsnI GGCC 2 cut(s) 887, 970
Bso31I GGTCTC 1 cut(s) 699
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 960
Bsp143I GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 1 cut(s) 503
BspANI GGCC 2 cut(s) 887, 970
BspCNI CTCAG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 1236
BspLI GGNNCC 4 cut(s) 401, 498, 680, 773
BspMAI CTGCAG 1 cut(s) 1216
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 2 cut(s) 766, 779
BspT107I GGYRCC 2 cut(s) 399, 496
BspTNI GGTCTC 1 cut(s) 699
BsrI ACTGG 5 cut(s) 674, 773, 953, 971, 1382
BssECI CCNNGG 5 cut(s) 233, 403, 404, 475, 593
BssMI GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 764, 908
Bst4CI ACNGT 5 cut(s) 101, 188, 440, 518, 594
Bst6I CTCTTC 1 cut(s) 1250
BstC8I GCNNGC 3 cut(s) 751, 1066, 1207
BstDEI CTNAG 2 cut(s) 392, 576
BstDSI CCRYGG 2 cut(s) 233, 593
BstF5I GGATG 2 cut(s) 651, 759
BstHHI GCGC 1 cut(s) 1193
BstKTI GATC 7 cut(s) 25, 51, 166, 226, 464, 774, 1312
BstMAI GTCTC 3 cut(s) 699, 730, 1190
BstMBI GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
BstMWI GCNNNNNNNGC 1 cut(s) 1211
BstNI CCWGG 2 cut(s) 764, 908
BstNSI RCATGY 2 cut(s) 195, 1117
BstSCI CCNGG 6 cut(s) 195, 403, 404, 474, 762, 906
BstSFI CTRYAG 3 cut(s) 147, 1011, 1212
BstSLI GKGCMC 1 cut(s) 960
BstV1I GCAGC 2 cut(s) 397, 1073
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 3 cut(s) 223, 771, 1309
BstYI RGATCY 3 cut(s) 223, 771, 1309
BsuI GTATCC 2 cut(s) 724, 1397
BsuRI GGCC 2 cut(s) 887, 970
BtgI CCRYGG 2 cut(s) 233, 593
BtsCI GGATG 2 cut(s) 651, 759
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 960
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 3 cut(s) 751, 1066, 1207
CciI TCATGA 1 cut(s) 1236
CfoI GCGC 1 cut(s) 1193
Cfr9I CCCGGG 1 cut(s) 404
CseI GACGC 1 cut(s) 499
Csp6I GTAC 7 cut(s) 189, 334, 400, 413, 514, 877, 1375
CviAII CATG 7 cut(s) 192, 234, 262, 858, 1114, 1237, 1285
CviQI GTAC 7 cut(s) 189, 334, 400, 413, 514, 877, 1375
DdeI CTNAG 2 cut(s) 392, 576
DpnI GATC 7 cut(s) 24, 50, 165, 225, 463, 773, 1311
DpnII GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
DriI GACNNNNNGTC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 1250
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 1250
Eco130I CCWWGG 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 1109, 1191
Eco88I CYCGRG 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 762, 906
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 730
FaeI CATG 7 cut(s) 195, 237, 265, 861, 1117, 1240, 1288
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 3 cut(s) 272, 482, 492
FatI CATG 7 cut(s) 191, 233, 261, 857, 1113, 1236, 1284
FauNDI CATATG 1 cut(s) 371
FbaI TGATCA 2 cut(s) 22, 48
FblI GTMKAC 1 cut(s) 946
Fnu4HI GCNGC 3 cut(s) 386, 1062, 1400
FokI GGATG 2 cut(s) 658, 746
Fsp4HI GCNGC 3 cut(s) 386, 1062, 1400
FspBI CTAG 2 cut(s) 159, 299
FspI TGCGCA 1 cut(s) 1192
GlaI GCGC 1 cut(s) 1192
GluI GCNGC 3 cut(s) 386, 1062, 1400
HaeIII GGCC 2 cut(s) 887, 970
HapII CCGG 6 cut(s) 197, 208, 405, 452, 475, 511
HgaI GACGC 1 cut(s) 499
HhaI GCGC 1 cut(s) 1193
Hin1II CATG 7 cut(s) 195, 237, 265, 861, 1117, 1240, 1288
Hin6I GCGC 1 cut(s) 1191
HinP1I GCGC 1 cut(s) 1191
HinfI GANTC 8 cut(s) 249, 695, 779, 893, 1198, 1220, 1244, 1258
HpaII CCGG 6 cut(s) 197, 208, 405, 452, 475, 511
HphI GGTGA 2 cut(s) 533, 1264
Hpy166II GTNNAC 4 cut(s) 9, 366, 947, 958
Hpy188I TCNGA 5 cut(s) 18, 461, 730, 805, 1225
Hpy188III TCNNGA 2 cut(s) 170, 1237
Hpy8I GTNNAC 4 cut(s) 9, 366, 947, 958
Hpy99I CGWCG 2 cut(s) 493, 1267
HpyAV CCTTC 2 cut(s) 458, 1166
HpyCH4III ACNGT 5 cut(s) 101, 188, 440, 518, 594
HpyCH4IV ACGT 2 cut(s) 128, 723
HpyF10VI GCNNNNNNNGC 1 cut(s) 1211
HpyF3I CTNAG 2 cut(s) 392, 576
HpySE526I ACGT 2 cut(s) 128, 723
Hsp92II CATG 7 cut(s) 195, 237, 265, 861, 1117, 1240, 1288
HspAI GCGC 1 cut(s) 1191
KpnI GGTACC 1 cut(s) 403
Ksp22I TGATCA 2 cut(s) 22, 48
Kzo9I GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
LmnI GCTCC 3 cut(s) 424, 636, 1175
Lsp1109I GCAGC 2 cut(s) 397, 1073
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 159, 299
MaeII ACGT 2 cut(s) 128, 723
MaeIII GTNAC 3 cut(s) 626, 808, 898
MalI GATC 7 cut(s) 24, 50, 165, 225, 463, 773, 1311
MboI GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
MboII GAAGA 7 cut(s) 233, 292, 631, 925, 1102, 1267, 1379
MfeI CAATTG 1 cut(s) 1050
MflI RGATCY 3 cut(s) 223, 771, 1309
MhlI GDGCHC 1 cut(s) 960
MluCI AATT 5 cut(s) 139, 1050, 1151, 1339, 1344
MlyI GAGTC 4 cut(s) 1192, 1229, 1253, 1267
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 7 cut(s) 264, 390, 627, 719, 722, 841, 1302
Mph1103I ATGCAT 1 cut(s) 667
MroXI GAANNNNTTC 1 cut(s) 1232
MseI TTAA 3 cut(s) 309, 1343, 1347
MslI CAYNNNNRTG 4 cut(s) 127, 804, 924, 1186
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 6 cut(s) 197, 208, 405, 452, 475, 511
MspR9I CCNGG 6 cut(s) 197, 405, 406, 476, 764, 908
MunI CAATTG 1 cut(s) 1050
Mva1269I GAATGC 2 cut(s) 751, 799
MvaI CCWGG 2 cut(s) 764, 908
MwoI GCNNNNNNNGC 1 cut(s) 1211
NciI CCSGG 4 cut(s) 197, 405, 406, 476
NcoI CCATGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 371
NdeII GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
NlaIII CATG 7 cut(s) 195, 237, 265, 861, 1117, 1240, 1288
NlaIV GGNNCC 4 cut(s) 401, 498, 680, 773
NsbI TGCGCA 1 cut(s) 1192
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 195, 1117
OliI CACNNNNGTG 2 cut(s) 127, 1186
PacI TTAATTAA 1 cut(s) 1347
PagI TCATGA 1 cut(s) 1236
PaqCI CACCTGC 1 cut(s) 484
PciI ACATGT 1 cut(s) 1113
PctI GAATGC 2 cut(s) 751, 799
PdmI GAANNNNTTC 1 cut(s) 1232
PfeI GAWTC 4 cut(s) 249, 695, 779, 893
PflFI GACNNNGTC 1 cut(s) 1243
PfoI TCCNGGA 1 cut(s) 762
PkrI GCNGC 3 cut(s) 387, 1063, 1401
PleI GAGTC 4 cut(s) 1192, 1228, 1252, 1266
PpsI GAGTC 4 cut(s) 1192, 1228, 1252, 1266
PscI ACATGT 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 762, 906
PspGI CCWGG 2 cut(s) 762, 906
PspN4I GGNNCC 4 cut(s) 401, 498, 680, 773
PstI CTGCAG 1 cut(s) 1216
PsuI RGATCY 3 cut(s) 223, 771, 1309
PsyI GACNNNGTC 1 cut(s) 1243
RsaI GTAC 7 cut(s) 190, 335, 401, 414, 515, 878, 1376
RsaNI GTAC 7 cut(s) 189, 334, 400, 413, 514, 877, 1375
RseI CAYNNNNRTG 4 cut(s) 127, 804, 924, 1186
SaqAI TTAA 3 cut(s) 309, 1343, 1347
SatI GCNGC 3 cut(s) 386, 1062, 1400
Sau3AI GATC 7 cut(s) 22, 48, 163, 223, 461, 771, 1309
ScaI AGTACT 1 cut(s) 1376
SchI GAGTC 4 cut(s) 1192, 1229, 1253, 1267
ScrFI CCNGG 6 cut(s) 197, 405, 406, 476, 764, 908
SduI GDGCHC 1 cut(s) 960
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 3 cut(s) 147, 1011, 1212
SmaI CCCGGG 1 cut(s) 406
SmiMI CAYNNNNRTG 4 cut(s) 127, 804, 924, 1186
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 5 cut(s) 139, 1050, 1151, 1339, 1344
SsiI CCGC 1 cut(s) 503
SspMI CTAG 2 cut(s) 159, 299
StyD4I CCNGG 6 cut(s) 195, 403, 404, 474, 762, 906
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 5 cut(s) 101, 188, 440, 518, 594
TaiI ACGT 2 cut(s) 131, 726
TaqI TCGA 3 cut(s) 84, 488, 1265
TaqII GACCGA 1 cut(s) 1256
TasI AATT 5 cut(s) 139, 1050, 1151, 1339, 1344
TatI WGTACW 2 cut(s) 876, 1374
TfiI GAWTC 4 cut(s) 249, 695, 779, 893
Tru1I TTAA 3 cut(s) 309, 1343, 1347
Tru9I TTAA 3 cut(s) 309, 1343, 1347
TscAI CASTG 1 cut(s) 960
TseI GCWGC 3 cut(s) 385, 1061, 1399
TspDTI ATGAA 6 cut(s) 748, 1063, 1109, 1146, 1225, 1314
TspGWI ACGGA 1 cut(s) 1251
TspMI CCCGGG 1 cut(s) 404
TspRI CASTG 1 cut(s) 960
Tth111I GACNNNGTC 1 cut(s) 1243
VneI GTGCAC 1 cut(s) 956
XapI RAATTY 1 cut(s) 1151
XceI RCATGY 2 cut(s) 195, 1117
XmaI CCCGGG 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 1232
XspI CTAG 2 cut(s) 159, 299
ZrmI AGTACT 1 cut(s) 1376
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.