Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001250.1

Orthogroup ID

OG0008951

Physical Location & Seq

Genomic Coordinates Forward (+)

194437 .. 196937

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001250.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgttgcgcgggtctcgttttgtcaaaccttttcagcttcaggctgcaacaaattggcaatcctctttgataaagggacctccagctgatactatcttcttcttgggttttctaatcattgcagccgttctatcttctttctggattcacctttggacttttcagattgatcattctacaaaccaaacaatagtgatcaacgacaagtatgagataacccccaaaataatcgagtttccactcaactgttctatcggcatcaatcaaacacaaacgtgtccaacaaattaccctatagcctttactagtgatcgtcttgacccatcgtcaaacggtacatgcccggactatttccggtttatccacgaagatctaaagccatggagaaccacaggaatcacaagggacatggtggagaggggaaagaagacggcacattttcggctagtgattgttaaaggcaaggcttatattgacaggtacaagaagtccatacagacaagggatatgtttaccatatggggtattttgcagcttcttaggaggtaccccgggaaagtacctgacttggagctgatgtttgactgtgatgaccttccggttatccgatcacgggactaccggggacagaactcgacgcaggtgccaccgctgttccggtactgtggtgatagatggacaaaagacattgtgttccctgattggtctttctggggttgggctgagataaacataaaaccgtggggaagtttgttgaaagatgtgaagaaaggtaacgagaggagcaaatggatggaaagagaaccttatgcatactggaaagggaacccctttgtagctgaatcaaggagagacctcctcaaatgcaacgtctcggatacacaggactggaatgctcgcttattcatccaggactggatccttgaatctcaacaaggcttcaagcattcagatgtaacaaaccaatgcacacatagacttcagaacttcagatcggtggtggaggaatctcccggtctccagtcttcagtctccagtctcactctcccggtctccagccaccgagctacctcctcggctcctccgccaccgtccactgagccacatccaaggctgacggctccactgggacctgcggactgcggtctgcatctctggattccctgcgtcatgcgactcagccgactcctgcaatcctgctccttgaactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Glyco_transf_90

Protein Analysis

404

Amino Acids

46.59

Weight (kDa)

9.1

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63420 AT1G63420
fragaria_vesca	FvH4_5g02040 FvH4_5g02040 FvH4_5g02040 FvH4_5g02041
malus_domestica	MD06G1079900.v1.1
prunus_persica	Prupe.5G097300_v2.0.a1 Prupe.5G097300_v2.0.a1
pyrus_communis	pycom06g07670
rosa_chinensis	RchiOBHm_Chr7g0198281
rosa_laevigata	RLG00000003878
rosa_multiflora	Rmu_sc0001250.1_g000040
rosa_roxburghii	Rroxscaffold_3G00257860
rosa_rugosa	Rorug07G0046700 Rorug07G0046700 Rorug07G0046700
rosa_samantha	Rh7AG170000 Rh7BG173200 Rh7CG179800 Rh7DG172400
rosa_wichuraiana	Rw7G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	2 cut(s)	631, 1141
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	2 cut(s)	546, 643
AccII	CGCG	1 cut(s)	9
AciI	CCGC	5 cut(s)	9, 650, 1085, 1136, 1143
AclWI	GGATC	2 cut(s)	913, 926
AcuI	CTGAAG	4 cut(s)	23, 965, 973, 1011
AfaI	GTAC	5 cut(s)	337, 482, 548, 561, 662
AfiI	CCNNNNNNNGG	1 cut(s)	613
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	757, 926, 943, 1207
AhdI	GACNNNNNGTC	1 cut(s)	325
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	909
AleI	CACNNNNGTG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	37, 86, 535, 574, 839, 1067
AluI	AGCT	6 cut(s)	37, 86, 535, 574, 839, 1067
Alw26I	GTCTC	7 cut(s)	18, 846, 877, 1022, 1036, 1043, 1057
AlwI	GGATC	2 cut(s)	913, 926
Ama87I	CYCGRG	1 cut(s)	551
ApeKI	GCWGC	3 cut(s)	44, 122, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	77, 1130
AsuC2I	CCSGG	6 cut(s)	344, 552, 553, 623, 1014, 1049
AsuHPI	GGTGA	2 cut(s)	140, 680
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	77, 1130
BaeI	ACNNNNGTAYC	2 cut(s)	652, 685
BamHI	GGATCC	1 cut(s)	918
BanI	GGYRCC	2 cut(s)	546, 643
BbsI	GAAGAC	2 cut(s)	434, 1017
BbvI	GCAGC	3 cut(s)	31, 134, 544
BccI	CCATC	3 cut(s)	331, 669, 787
BceAI	ACGGC	3 cut(s)	110, 447, 1134
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	1 cut(s)	911
BciVI	GTATCC	1 cut(s)	871
BclI	TGATCA	2 cut(s)	169, 195
BcnI	CCSGG	6 cut(s)	344, 552, 553, 623, 1014, 1049
BcoDI	GTCTC	7 cut(s)	18, 846, 877, 1022, 1036, 1043, 1057
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	2 cut(s)	306, 446
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	2 cut(s)	631, 1141
BfuI	GTATCC	1 cut(s)	871
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	45, 123, 533
BlsI	GCNGC	3 cut(s)	46, 124, 534
Bme1390I	CCNGG	7 cut(s)	344, 552, 553, 623, 911, 1014, 1049
Bme18I	GGWCC	2 cut(s)	77, 1130
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	77, 1130
BmiI	GGNNCC	8 cut(s)	78, 548, 645, 827, 920, 1080, 1122, 1131
BmrFI	CCNGG	7 cut(s)	344, 552, 553, 623, 911, 1014, 1049
BmrI	ACTGGG	1 cut(s)	1136
BmsI	GCATC	2 cut(s)	267, 1159
BmuI	ACTGGG	1 cut(s)	1136
BoxI	GACNNNNGTC	1 cut(s)	1143
BpiI	GAAGAC	2 cut(s)	434, 1017
BplI	GAGNNNNNCTC	2 cut(s)	843, 875
BpmI	CTGGAG	4 cut(s)	66, 1004, 1018, 1039
BpuMI	CCSGG	6 cut(s)	344, 552, 553, 623, 1014, 1049
BsaI	GGTCTC	4 cut(s)	18, 846, 1022, 1057
BsaJI	CCNNGG	7 cut(s)	380, 550, 551, 622, 740, 1074, 1109
BsaWI	WCCGGW	3 cut(s)	354, 598, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	6 cut(s)	821, 893, 920, 1021, 1035, 1131
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	911
BseDI	CCNNGG	7 cut(s)	380, 550, 551, 622, 740, 1074, 1109
BseGI	GGATG	3 cut(s)	798, 906, 1105
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	714, 1089, 1192
BseNI	ACTGG	6 cut(s)	821, 893, 920, 1021, 1035, 1131
BseRI	GAGGAG	4 cut(s)	796, 848, 1063, 1071
BseXI	GCAGC	3 cut(s)	31, 134, 544
Bsh1236I	CGCG	1 cut(s)	9
BshNI	GGYRCC	2 cut(s)	546, 643
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	8 cut(s)	344, 355, 552, 599, 622, 658, 1014, 1049
BslFI	GGGAC	5 cut(s)	90, 419, 629, 639, 1143
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	7 cut(s)	18, 846, 877, 1022, 1036, 1043, 1057
BsmBI	CGTCTC	1 cut(s)	877
BsmFI	GGGAC	5 cut(s)	90, 419, 629, 639, 1143
BsmI	GAATGC	2 cut(s)	898, 946
Bso31I	GGTCTC	4 cut(s)	18, 846, 1022, 1057
BsoBI	CYCGRG	1 cut(s)	551
Bsp143I	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	5 cut(s)	9, 650, 1085, 1136, 1143
BspCNI	CTCAG	3 cut(s)	715, 1090, 1191
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	8 cut(s)	78, 548, 645, 827, 920, 1080, 1122, 1131
BspMI	ACCTGC	2 cut(s)	631, 1141
BspPI	GGATC	2 cut(s)	913, 926
BspT107I	GGYRCC	2 cut(s)	546, 643
BspTNI	GGTCTC	4 cut(s)	18, 846, 1022, 1057
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	6 cut(s)	821, 893, 920, 1021, 1035, 1131
BssECI	CCNNGG	7 cut(s)	380, 550, 551, 622, 740, 1074, 1109
BssMI	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
BssT1I	CCWWGG	2 cut(s)	380, 1109
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	6 cut(s)	248, 335, 587, 665, 741, 1092
BstC8I	GCNNGC	1 cut(s)	898
BstDEI	CTNAG	4 cut(s)	539, 723, 1098, 1178
BstDSI	CCRYGG	2 cut(s)	380, 740
BstF5I	GGATG	3 cut(s)	798, 906, 1105
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	7 cut(s)	172, 198, 313, 373, 611, 921, 995
BstMAI	GTCTC	7 cut(s)	18, 846, 877, 1022, 1036, 1043, 1057
BstMBI	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	1 cut(s)	342
BstPAI	GACNNNNGTC	1 cut(s)	1143
BstSCI	CCNGG	7 cut(s)	342, 550, 551, 621, 909, 1012, 1047
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	31, 134, 544
BstV2I	GAAGAC	2 cut(s)	434, 1017
BstX2I	RGATCY	2 cut(s)	370, 918
BstYI	RGATCY	2 cut(s)	370, 918
BsuI	GTATCC	1 cut(s)	871
BtgI	CCRYGG	2 cut(s)	380, 740
BtsCI	GGATG	3 cut(s)	798, 906, 1105
BtsIMutI	CAGTG	2 cut(s)	1095, 1124
BveI	ACCTGC	2 cut(s)	631, 1141
Cac8I	GCNNGC	1 cut(s)	898
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	77, 1130
Cfr9I	CCCGGG	1 cut(s)	551
CseI	GACGC	2 cut(s)	646, 1156
Csp6I	GTAC	5 cut(s)	336, 481, 547, 560, 661
CviAII	CATG	4 cut(s)	339, 381, 409, 1171
CviQI	GTAC	5 cut(s)	336, 481, 547, 560, 661
DdeI	CTNAG	4 cut(s)	539, 723, 1098, 1178
DpnI	GATC	7 cut(s)	171, 197, 312, 372, 610, 920, 994
DpnII	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
DriI	GACNNNNNGTC	1 cut(s)	325
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	1074
Eco130I	CCWWGG	2 cut(s)	380, 1109
Eco31I	GGTCTC	4 cut(s)	18, 846, 1022, 1057
Eco47I	GGWCC	2 cut(s)	77, 1130
Eco57I	CTGAAG	4 cut(s)	23, 965, 973, 1011
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	2 cut(s)	77, 1130
EcoRII	CCWGG	1 cut(s)	909
EcoT14I	CCWWGG	2 cut(s)	380, 1109
EcoT22I	ATGCAT	1 cut(s)	814
ErhI	CCWWGG	2 cut(s)	380, 1109
Esp3I	CGTCTC	1 cut(s)	877
FaeI	CATG	4 cut(s)	342, 384, 412, 1174
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	5 cut(s)	90, 419, 629, 639, 1143
FatI	CATG	4 cut(s)	338, 380, 408, 1170
FauI	CCCGC	1 cut(s)	2
FauNDI	CATATG	1 cut(s)	518
FbaI	TGATCA	2 cut(s)	169, 195
Fnu4HI	GCNGC	3 cut(s)	45, 123, 533
FokI	GGATG	3 cut(s)	805, 893, 1092
Fsp4HI	GCNGC	3 cut(s)	45, 123, 533
FspBI	CTAG	2 cut(s)	306, 446
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	45, 123, 533
GsuI	CTGGAG	4 cut(s)	66, 1004, 1018, 1039
HapII	CCGG	8 cut(s)	344, 355, 552, 599, 622, 658, 1014, 1049
HgaI	GACGC	2 cut(s)	646, 1156
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	342, 384, 412, 1174
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	8 cut(s)	145, 396, 842, 926, 1007, 1159, 1176, 1185
HpaII	CCGG	8 cut(s)	344, 355, 552, 599, 622, 658, 1014, 1049
HphI	GGTGA	2 cut(s)	140, 680
Hpy166II	GTNNAC	2 cut(s)	513, 1095
Hpy188I	TCNGA	6 cut(s)	165, 608, 877, 952, 984, 992
Hpy188III	TCNNGA	4 cut(s)	142, 317, 1156, 1212
Hpy8I	GTNNAC	2 cut(s)	513, 1095
Hpy99I	CGWCG	1 cut(s)	640
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	6 cut(s)	248, 335, 587, 665, 741, 1092
HpyCH4IV	ACGT	2 cut(s)	275, 870
HpyCH4V	TGCA	8 cut(s)	47, 122, 532, 812, 867, 969, 1150, 1192
HpyF3I	CTNAG	4 cut(s)	539, 723, 1098, 1178
HpySE526I	ACGT	2 cut(s)	275, 870
Hsp92II	CATG	4 cut(s)	342, 384, 412, 1174
HspAI	GCGC	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	169, 195
Kzo9I	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
LmnI	GCTCC	5 cut(s)	571, 783, 1084, 1126, 1205
Lsp1109I	GCAGC	3 cut(s)	31, 134, 544
LweI	GCATC	2 cut(s)	267, 1159
MaeI	CTAG	2 cut(s)	306, 446
MaeII	ACGT	2 cut(s)	275, 870
MaeIII	GTNAC	2 cut(s)	773, 955
MalI	GATC	7 cut(s)	171, 197, 312, 372, 610, 920, 994
MboI	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
MboII	GAAGA	7 cut(s)	88, 91, 126, 380, 439, 778, 1017
MflI	RGATCY	2 cut(s)	370, 918
MluCI	AATT	2 cut(s)	52, 286
MlyI	GAGTC	2 cut(s)	1170, 1179
MmeI	TCCRAC	1 cut(s)	305
Mph1103I	ATGCAT	1 cut(s)	814
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	274, 951
MspA1I	CMGCKG	2 cut(s)	86, 652
MspI	CCGG	8 cut(s)	344, 355, 552, 599, 622, 658, 1014, 1049
MspR9I	CCNGG	7 cut(s)	344, 552, 553, 623, 911, 1014, 1049
Mva1269I	GAATGC	2 cut(s)	898, 946
MvaI	CCWGG	1 cut(s)	911
MvnI	CGCG	1 cut(s)	9
NciI	CCSGG	6 cut(s)	344, 552, 553, 623, 1014, 1049
NcoI	CCATGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
NlaIII	CATG	4 cut(s)	342, 384, 412, 1174
NlaIV	GGNNCC	8 cut(s)	78, 548, 645, 827, 920, 1080, 1122, 1131
NmeAIII	GCCGAG	1 cut(s)	1055
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	631
PctI	GAATGC	2 cut(s)	898, 946
PfeI	GAWTC	6 cut(s)	145, 396, 842, 926, 1007, 1159
PfoI	TCCNGGA	1 cut(s)	909
PkrI	GCNGC	3 cut(s)	46, 124, 534
PleI	GAGTC	2 cut(s)	1170, 1179
PpsI	GAGTC	2 cut(s)	1170, 1179
PpuMI	RGGWCCY	2 cut(s)	77, 1130
PshAI	GACNNNNGTC	1 cut(s)	1143
Psp5II	RGGWCCY	2 cut(s)	77, 1130
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	8 cut(s)	78, 548, 645, 827, 920, 1080, 1122, 1131
PspPI	GGNCC	2 cut(s)	77, 1130
PspPPI	RGGWCCY	2 cut(s)	77, 1130
PsuI	RGATCY	2 cut(s)	370, 918
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	5 cut(s)	337, 482, 548, 561, 662
RsaNI	GTAC	5 cut(s)	336, 481, 547, 560, 661
RseI	CAYNNNNRTG	2 cut(s)	274, 951
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	3 cut(s)	45, 123, 533
Sau3AI	GATC	7 cut(s)	169, 195, 310, 370, 608, 918, 992
Sau96I	GGNCC	2 cut(s)	77, 1130
SchI	GAGTC	2 cut(s)	1170, 1179
ScrFI	CCNGG	7 cut(s)	344, 552, 553, 623, 911, 1014, 1049
SfaNI	GCATC	2 cut(s)	267, 1159
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	2 cut(s)	77, 1130
SmaI	CCCGGG	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	274, 951
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	2 cut(s)	52, 286
SsiI	CCGC	5 cut(s)	9, 650, 1085, 1136, 1143
SspMI	CTAG	2 cut(s)	306, 446
StyD4I	CCNGG	7 cut(s)	342, 550, 551, 621, 909, 1012, 1047
StyI	CCWWGG	2 cut(s)	380, 1109
TaaI	ACNGT	6 cut(s)	248, 335, 587, 665, 741, 1092
TaiI	ACGT	2 cut(s)	278, 873
TaqI	TCGA	2 cut(s)	231, 635
TasI	AATT	2 cut(s)	52, 286
TfiI	GAWTC	6 cut(s)	145, 396, 842, 926, 1007, 1159
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	1102, 1131
TseI	GCWGC	3 cut(s)	44, 122, 532
TspDTI	ATGAA	1 cut(s)	895
TspMI	CCCGGG	1 cut(s)	551
TspRI	CASTG	2 cut(s)	1102, 1131
VpaK11BI	GGWCC	2 cut(s)	77, 1130
XceI	RCATGY	1 cut(s)	342
XmaI	CCCGGG	1 cut(s)	551
XspI	CTAG	2 cut(s)	306, 446
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.