pycom06g07670

Putative lipopolysaccharide-modifying enzyme.

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
12512007 .. 12514373
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07670.6

Sequence Viewer

Length: 1557 bp
ATGTTGCGTGGATATCGTTTTGCCAGACCTTTCAAGTTTCAGGGAACAAGTTTAAAGGGATCTGCACCAGCTGCTGTTGCAACCAATACTATTCTCTTCGTGGGGCTATTCATTGTTGCTTCGGCCATTCTATCTTCCTTTTGGGTTCAAACCTCCAATTTTCAGATTGGAAGTTCTACAAACCAAACCATAGTAGTCTCCAATGAGTTTAAAAAAACCCCTAAACCAGTTGAATTCCCACTCAACTGTTCCATCGGCAACCAAACTCAGACCTGCCCAGCAAACTACCCTACAACCTTTGGCAATACTGATGAACTTGACCCGTCGCCAAACCCTTTGTGCCCGGACTATTTCCGGTTCATCCACCAGGATCTCATGCCATGGAAACGCACAGGAATCACAAGGGACATGGTGGAGAACGCAAAGAAGACAGCACATTTTAGGCTCGTGATTGTGAAGGGCAAGGTTTATGTTGAGAAGTACAAGCAGTCCATACAAACAAGGGATGTTTTTACCATATGGGGCATTTTGCAGCTTCTTAGGAGGTATCCTGGCAGACTACCTGACTTGGAGTTCATGTTTGACTGTGATGACCAGCCGGTCATCCGATCAAGGGACTACCAGGGACTGAACTCGACTCGGGTACCGCCACTGTTCCGGTATTGTGGTGATAGATGGACAAGGGACATTGTGTTCCCTGATTGGTCCTTCTGGGGTTGGAATGAGATAAACATAAAACCATGGGAAGGTTTGTTGAAAGATGTCAAGAAAGGCAATGAAAGGATCAAATGGATGGACAGAGAACCTTATGCATACTGGAAAGGAAACCCCTTTGTTGCTGATACGAGGGAAGACTTACTCAAATGTAATGTCTCAGGGACACAAGACTGGAATGCTCGCCTATTCATCCAGGATTGGATTCTTGAATCTCAACAAGGCTTCAAGCAATCAAATGTAGCAGACCAATGCACACACAGGTACAAGATCGATCTTGAGGGTTATGCATGGTCTGTGAGCGAGAAGTACATTCTAGCCTGTGATTCAGTAACATTGTTGATAAAACCGAAATACTATGATTTCTTCACAAGAGGTCTGCAACCAGTGCACCATTACTGGCCTATAAGGCATGAAAACAAATGTAGATCCATTAAGTTTGCTGTGGATTGGGGCAACAACCACAAACAAAAGGCACAAGCAATTGGAAAAGCAGCAAGCGACTTCATTCAGGAGGAGCTAAAGATGGACTATGTGTATGACTACATGTTTCATTTGTTAAATGAATATGCTAAACTCTTAAGATTTGAGCCACGAATACCCAAAGGCACTACACATTTGTGCTCGGAGAGTATAGCTTGTCCTGCAAATGAGTCGCCGAAGAAGTCTATGACCGAATCATTGGTTAAGAGTCCATCAGCAACAGACCCTTGCACCATGCCTCCTCCCTATGAACCCCGAGCTCTTGCAAAGTTATACAGGAGGAATATTAATTCAATTACACAAGTGCAACAGTGGGAAGATAAGTACTGGGAAAATCTCTCTAAGCAGCAACAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

60.4

Weight (kDa)

9.02

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 643
AciI CCGC 1 cut(s) 647
AclWI GGATC 4 cut(s) 67, 378, 791, 1137
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 5 cut(s) 482, 645, 980, 1025, 1523
AfiI CCNNNNNNNGG 2 cut(s) 613, 746
AflII CTTAAG 1 cut(s) 1294
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 7 cut(s) 34, 149, 233, 757, 926, 943, 1491
AjnI CCWGG 4 cut(s) 366, 550, 621, 909
AleI CACNNNNGTG 1 cut(s) 1333
AloI GAACNNNNNNTCC 2 cut(s) 677, 709
AluBI AGCT 5 cut(s) 71, 535, 1234, 1352, 1457
AluI AGCT 5 cut(s) 71, 535, 1234, 1352, 1457
Alw21I GWGCWC 3 cut(s) 1107, 1340, 1459
Alw26I GTCTC 2 cut(s) 202, 877
Alw44I GTGCAC 1 cut(s) 1103
AlwI GGATC 4 cut(s) 67, 378, 791, 1137
AlwNI CAGNNNCTG 2 cut(s) 74, 628
Ama87I CYCGRG 2 cut(s) 639, 1452
AoxI GGCC 2 cut(s) 123, 1115
ApaLI GTGCAC 1 cut(s) 1103
ApeKI GCWGC 4 cut(s) 71, 532, 1208, 1543
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
AseI ATTAAT 1 cut(s) 1485
Asp718I GGTACC 1 cut(s) 643
AspS9I GGNCC 1 cut(s) 705
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 680
AvaI CYCGRG 2 cut(s) 639, 1452
AvaII GGWCC 1 cut(s) 705
BaeGI GKGCMC 2 cut(s) 344, 1107
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BanI GGYRCC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 1459
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 2 cut(s) 434, 858
Bbv12I GWGCWC 3 cut(s) 1107, 1340, 1459
BbvI GCAGC 3 cut(s) 58, 544, 1220
BccI CCATC 5 cut(s) 260, 669, 787, 1234, 1417
BcgI CGANNNNNNTGC 2 cut(s) 1350, 1384
BciT130I CCWGG 4 cut(s) 368, 552, 623, 911
BciVI GTATCC 1 cut(s) 558
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 202, 877
BfaI CTAG 1 cut(s) 1031
BfrI CTTAAG 1 cut(s) 1294
BfuAI ACCTGC 1 cut(s) 281
BfuI GTATCC 1 cut(s) 558
BglI GCCNNNNNGGC 1 cut(s) 1123
BisI GCNGC 4 cut(s) 72, 533, 1209, 1544
BlsI GCNGC 4 cut(s) 73, 534, 1210, 1545
BmcAI AGTACT 1 cut(s) 1523
Bme1390I CCNGG 5 cut(s) 344, 368, 552, 623, 911
Bme18I GGWCC 1 cut(s) 705
BmeT110I CYCGRG 2 cut(s) 639, 1452
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 5 cut(s) 344, 368, 552, 623, 911
BmrI ACTGGG 1 cut(s) 1534
BmuI ACTGGG 1 cut(s) 1534
BpiI GAAGAC 2 cut(s) 434, 858
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 987
BsaJI CCNNGG 3 cut(s) 380, 622, 740
BsaWI WCCGGW 2 cut(s) 354, 657
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 1420, 1450
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 746
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 6 cut(s) 227, 821, 893, 1100, 1118, 1529
Bse3DI GCAATG 1 cut(s) 781
BseBI CCWGG 4 cut(s) 368, 552, 623, 911
BseCI ATCGAT 1 cut(s) 987
BseDI CCNNGG 3 cut(s) 380, 622, 740
BseGI GGATG 5 cut(s) 360, 511, 603, 798, 906
BseLI CCNNNNNNNGG 2 cut(s) 613, 746
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 2 cut(s) 281, 888
BseNI ACTGG 6 cut(s) 227, 821, 893, 1100, 1118, 1529
BseRI GAGGAG 2 cut(s) 1244, 1428
BseSI GKGCMC 2 cut(s) 344, 1107
BseXI GCAGC 3 cut(s) 58, 544, 1220
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 2 cut(s) 125, 1117
BshNI GGYRCC 1 cut(s) 643
BshVI ATCGAT 1 cut(s) 987
BsiHKAI GWGCWC 3 cut(s) 1107, 1340, 1459
BsiHKCI CYCGRG 2 cut(s) 639, 1452
BsiSI CCGG 4 cut(s) 344, 355, 599, 658
BslFI GGGAC 5 cut(s) 419, 629, 639, 698, 892
BslI CCNNNNNNNGG 2 cut(s) 613, 746
BsmAI GTCTC 2 cut(s) 202, 877
BsmFI GGGAC 5 cut(s) 419, 629, 639, 698, 892
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 2 cut(s) 125, 1117
BsoBI CYCGRG 2 cut(s) 639, 1452
Bsp1286I GDGCHC 4 cut(s) 344, 1107, 1340, 1459
Bsp143I GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
Bsp19I CCATGG 2 cut(s) 380, 740
BspACI CCGC 1 cut(s) 647
BspANI GGCC 2 cut(s) 125, 1117
BspCNI CTCAG 2 cut(s) 280, 887
BspDI ATCGAT 1 cut(s) 987
BspLI GGNNCC 1 cut(s) 645
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 4 cut(s) 67, 378, 791, 1137
BspT107I GGYRCC 1 cut(s) 643
BspTI CTTAAG 1 cut(s) 1294
BsrDI GCAATG 1 cut(s) 781
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 6 cut(s) 227, 821, 893, 1100, 1118, 1529
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 3 cut(s) 380, 622, 740
BssMI GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 2 cut(s) 380, 740
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 4 cut(s) 368, 552, 623, 911
Bst4CI ACNGT 5 cut(s) 248, 587, 654, 1509, 1551
Bst6I CTCTTC 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 1294
BstAPI GCANNNNNTGC 2 cut(s) 71, 1102
BstC8I GCNNGC 2 cut(s) 898, 1213
BstDEI CTNAG 4 cut(s) 267, 539, 874, 1539
BstDSI CCRYGG 2 cut(s) 380, 740
BstF5I GGATG 5 cut(s) 360, 511, 603, 798, 906
BstKTI GATC 7 cut(s) 62, 373, 611, 786, 987, 991, 1145
BstMAI GTCTC 2 cut(s) 202, 877
BstMBI GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
BstMWI GCNNNNNNNGC 5 cut(s) 71, 77, 1102, 1123, 1358
BstNI CCWGG 4 cut(s) 368, 552, 623, 911
BstNSI RCATGY 1 cut(s) 1264
BstSCI CCNGG 5 cut(s) 342, 366, 550, 621, 909
BstSLI GKGCMC 2 cut(s) 344, 1107
BstV1I GCAGC 3 cut(s) 58, 544, 1220
BstV2I GAAGAC 2 cut(s) 434, 858
BstX2I RGATCY 3 cut(s) 59, 370, 1142
BstYI RGATCY 3 cut(s) 59, 370, 1142
Bsu15I ATCGAT 1 cut(s) 987
BsuI GTATCC 1 cut(s) 558
BsuRI GGCC 2 cut(s) 125, 1117
BsuTUI ATCGAT 1 cut(s) 987
BtgI CCRYGG 2 cut(s) 380, 740
BtsCI GGATG 5 cut(s) 360, 511, 603, 798, 906
BtsIMutI CAGTG 3 cut(s) 650, 1107, 1514
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 898, 1213
CaiI CAGNNNCTG 2 cut(s) 74, 628
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 705
ClaI ATCGAT 1 cut(s) 987
Csp6I GTAC 5 cut(s) 481, 644, 979, 1024, 1522
CviAII CATG 9 cut(s) 376, 381, 409, 577, 741, 1005, 1127, 1261, 1432
CviQI GTAC 5 cut(s) 481, 644, 979, 1024, 1522
DdeI CTNAG 4 cut(s) 267, 539, 874, 1539
DpnI GATC 7 cut(s) 61, 372, 610, 785, 986, 990, 1144
DpnII GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
DraI TTTAAA 2 cut(s) 54, 211
DrdI GACNNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 599
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 1457
Eco130I CCWWGG 2 cut(s) 380, 740
Eco24I GRGCYC 1 cut(s) 1459
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 705
Eco53kI GAGCTC 1 cut(s) 1457
Eco88I CYCGRG 2 cut(s) 639, 1452
EcoICRI GAGCTC 1 cut(s) 1457
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 366, 550, 621, 909
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 380, 740
EcoT22I ATGCAT 2 cut(s) 814, 1006
EcoT38I GRGCYC 1 cut(s) 1459
ErhI CCWWGG 2 cut(s) 380, 740
FaeI CATG 9 cut(s) 379, 384, 412, 580, 744, 1008, 1130, 1264, 1435
FaqI GGGAC 5 cut(s) 419, 629, 639, 698, 892
FatI CATG 9 cut(s) 375, 380, 408, 576, 740, 1004, 1126, 1260, 1431
FauNDI CATATG 1 cut(s) 518
Fnu4HI GCNGC 4 cut(s) 72, 533, 1209, 1544
FokI GGATG 5 cut(s) 347, 518, 590, 805, 893
FriOI GRGCYC 1 cut(s) 1459
Fsp4HI GCNGC 4 cut(s) 72, 533, 1209, 1544
FspBI CTAG 1 cut(s) 1031
GluI GCNGC 4 cut(s) 72, 533, 1209, 1544
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 2 cut(s) 125, 1117
HapII CCGG 4 cut(s) 344, 355, 599, 658
Hin1II CATG 9 cut(s) 379, 384, 412, 580, 744, 1008, 1130, 1264, 1435
HinfI GANTC 8 cut(s) 396, 637, 919, 926, 1040, 1367, 1391, 1405
HpaII CCGG 4 cut(s) 344, 355, 599, 658
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 1 cut(s) 1105
Hpy188I TCNGA 4 cut(s) 165, 270, 608, 1342
Hpy188III TCNNGA 5 cut(s) 448, 766, 923, 992, 1226
Hpy8I GTNNAC 1 cut(s) 1105
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 3 cut(s) 451, 718, 740
HpyCH4III ACNGT 5 cut(s) 248, 587, 654, 1509, 1551
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 77, 1102, 1123, 1358
HpyF3I CTNAG 4 cut(s) 267, 539, 874, 1539
Hsp92II CATG 9 cut(s) 379, 384, 412, 580, 744, 1008, 1130, 1264, 1435
KpnI GGTACC 1 cut(s) 647
Kzo9I GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
LmnI GCTCC 1 cut(s) 1231
Lsp1109I GCAGC 3 cut(s) 58, 544, 1220
MaeI CTAG 1 cut(s) 1031
MaeIII GTNAC 1 cut(s) 1045
MalI GATC 7 cut(s) 61, 372, 610, 785, 986, 990, 1144
MboI GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
MboII GAAGA 7 cut(s) 88, 126, 439, 863, 1072, 1387, 1526
MfeI CAATTG 1 cut(s) 1197
MflI RGATCY 3 cut(s) 59, 370, 1142
MhlI GDGCHC 4 cut(s) 344, 1107, 1340, 1459
MluCI AATT 5 cut(s) 157, 233, 1197, 1486, 1491
MlyI GAGTC 3 cut(s) 631, 1376, 1414
MmeI TCCRAC 1 cut(s) 698
MnlI CCTC 9 cut(s) 163, 537, 840, 988, 1082, 1222, 1446, 1449, 1470
Mph1103I ATGCAT 2 cut(s) 814, 1006
MseI TTAA 7 cut(s) 53, 210, 1149, 1274, 1295, 1401, 1485
MslI CAYNNNNRTG 1 cut(s) 1333
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 1294
MspI CCGG 4 cut(s) 344, 355, 599, 658
MspR9I CCNGG 5 cut(s) 344, 368, 552, 623, 911
MunI CAATTG 1 cut(s) 1197
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 4 cut(s) 368, 552, 623, 911
MwoI GCNNNNNNNGC 5 cut(s) 71, 77, 1102, 1123, 1358
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 2 cut(s) 380, 740
NdeI CATATG 1 cut(s) 518
NdeII GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
NlaIII CATG 9 cut(s) 379, 384, 412, 580, 744, 1008, 1130, 1264, 1435
NlaIV GGNNCC 1 cut(s) 645
NsiI ATGCAT 2 cut(s) 814, 1006
NspI RCATGY 1 cut(s) 1264
OliI CACNNNNGTG 1 cut(s) 1333
PciI ACATGT 1 cut(s) 1260
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 5 cut(s) 396, 919, 926, 1040, 1391
PfoI TCCNGGA 1 cut(s) 909
PkrI GCNGC 4 cut(s) 73, 534, 1210, 1545
PleI GAGTC 3 cut(s) 631, 1375, 1413
PpsI GAGTC 3 cut(s) 631, 1375, 1413
PscI ACATGT 1 cut(s) 1260
PshBI ATTAAT 1 cut(s) 1485
Psp124BI GAGCTC 1 cut(s) 1459
Psp6I CCWGG 4 cut(s) 366, 550, 621, 909
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 4 cut(s) 366, 550, 621, 909
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 1 cut(s) 705
PstNI CAGNNNCTG 2 cut(s) 74, 628
PsuI RGATCY 3 cut(s) 59, 370, 1142
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 5 cut(s) 482, 645, 980, 1025, 1523
RsaNI GTAC 5 cut(s) 481, 644, 979, 1024, 1522
RseI CAYNNNNRTG 1 cut(s) 1333
SacI GAGCTC 1 cut(s) 1459
SaqAI TTAA 7 cut(s) 53, 210, 1149, 1274, 1295, 1401, 1485
SatI GCNGC 4 cut(s) 72, 533, 1209, 1544
Sau3AI GATC 7 cut(s) 59, 370, 608, 783, 984, 988, 1142
Sau96I GGNCC 1 cut(s) 705
ScaI AGTACT 1 cut(s) 1523
SchI GAGTC 3 cut(s) 631, 1376, 1414
ScrFI CCNGG 5 cut(s) 344, 368, 552, 623, 911
SduI GDGCHC 4 cut(s) 344, 1107, 1340, 1459
SinI GGWCC 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 1333
SmlI CTYRAG 2 cut(s) 992, 1294
SmoI CTYRAG 2 cut(s) 992, 1294
Sse9I AATT 5 cut(s) 157, 233, 1197, 1486, 1491
SsiI CCGC 1 cut(s) 647
SspI AATATT 1 cut(s) 1483
SspMI CTAG 1 cut(s) 1031
SstI GAGCTC 1 cut(s) 1459
StyD4I CCNGG 5 cut(s) 342, 366, 550, 621, 909
StyI CCWWGG 2 cut(s) 380, 740
TaaI ACNGT 5 cut(s) 248, 587, 654, 1509, 1551
TaqI TCGA 2 cut(s) 635, 987
TaqII GACCGA 1 cut(s) 1403
TasI AATT 5 cut(s) 157, 233, 1197, 1486, 1491
TatI WGTACW 3 cut(s) 480, 1023, 1521
TfiI GAWTC 5 cut(s) 396, 919, 926, 1040, 1391
Tru1I TTAA 7 cut(s) 53, 210, 1149, 1274, 1295, 1401, 1485
Tru9I TTAA 7 cut(s) 53, 210, 1149, 1274, 1295, 1401, 1485
TscAI CASTG 3 cut(s) 657, 1107, 1514
TseI GCWGC 4 cut(s) 71, 532, 1208, 1543
TspRI CASTG 3 cut(s) 657, 1107, 1514
Vha464I CTTAAG 1 cut(s) 1294
VneI GTGCAC 1 cut(s) 1103
VpaK11BI GGWCC 1 cut(s) 705
VspI ATTAAT 1 cut(s) 1485
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 1264
XspI CTAG 1 cut(s) 1031
ZrmI AGTACT 1 cut(s) 1523
Zsp2I ATGCAT 2 cut(s) 814, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.