Rh7BG173200

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008951
Physical Location & Seq
Reverse (-)
13572991 .. 13576232
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG173200.1

Sequence Viewer

Length: 1248 bp
ATGTTGCGCGGGTCTCGTTTTGTCAAACCTTTTCAGCTTCAGGCTGCAACAAATTGGCAATCCTCTTTGATAAAGGGACCTCCAGCTAATACTATCTTCTTGGGTTTTCTAATCATTGCAGTCGTTCTATTTTCTTTCTGGATTGACCTTTGGACCTTTCAGATTGATCATTCTACAAACCAAACAATAGTGATCAACGACAAGTATGAGATAACCCCCAAAATAATCGAGTTTCCACTCAACTGTTCTATCGGCATCAATCAAACACAAACGTGTCCAACAAATTACCCTATAGCCTTTACTAGTGATCGTCTTGACCCATCGTCAAACGGTACATGCCCGGACTATTTCCGGTTTATCCACGAAGATCTAAAGCCATGGAGAACCACAGGAATCACAAGGGACATGGTGGAGAGGGGAAAGAAGACGGCACATTTTCGGCTAGTGATTGTTAAAGGCAAGGCTTATATTGACAGGTACAAGAAGTCCATACAGACAAGGGATATGTTTACCATATGGGGTATTTTGCAGCTTCTTAGGAGGTACCCCGGGAAAGTACCTGACTTGGAGCTGATGTTTGACTGTGATGACCTTCCGGTTATCCGATCACAGGACTACCGGGGACAGAACTCGACGCAGGTGCCACCGCTGTTCCGGTACTGTGGTGATAGATGGACAAAAGACATTGTGTTCCCTGATTGGTCTTTCTGGGGTTGGGCTGAGATAAACATAAAACCGTGGGGAAGTTTGTTGAAAGATGTGAAGAAAGGTAACGAGGGGAGCAAATGGATGGAAAGAGAACCTTATGCATACTGGAAAGGGAACCCCTTTGTAGCTGAATCAAGGAGAGACCTCCTCAAATGCAACGTCTCGGATACACAGGATTGGAATGCTCGCTTATTCATCCAGGACTGGATCCTTGAATCTCAACAAGGCTTCAAGCATTCAGATGTAACAAACCAATGCACACATAGGTATAAGATATATATTGAGGGCTATGCATGGTCTGTTAGTGAGAAGTACATTCTGGCCTGTGATTCAGTAACATTGCTGGTAAAACCACACTACTATGATTTCTTCACAAGAAGTCTACGACCAATGCACCATTACTGGCCTATAAGGAATGATAACAAATGCAAATCCATCAAGTTTGCTGTAGATTGGGGAAACAATCACAAACAAAAGGTAATACCCTCTAACTTGAACATTACTAAATTTTCCATTTCTTCAATATATTCTGCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

415

Amino Acids

48.79

Weight (kDa)

9.19

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 109 - 396 8.3e-146 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 628
Acc65I GGTACC 1 cut(s) 543
AccB1I GGYRCC 2 cut(s) 543, 640
AccI GTMKAC 1 cut(s) 1090
AccII CGCG 1 cut(s) 9
AciI CCGC 2 cut(s) 9, 647
AclWI GGATC 2 cut(s) 910, 923
AcsI RAATTY 1 cut(s) 1214
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 6 cut(s) 334, 479, 545, 558, 659, 1022
AfiI CCNNNNNNNGG 1 cut(s) 610
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 5 cut(s) 754, 923, 940, 1204, 1230
AhdI GACNNNNNGTC 1 cut(s) 322
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 1 cut(s) 906
AleI CACNNNNGTG 1 cut(s) 271
AluBI AGCT 5 cut(s) 37, 86, 532, 571, 836
AluI AGCT 5 cut(s) 37, 86, 532, 571, 836
Alw26I GTCTC 3 cut(s) 18, 843, 874
AlwI GGATC 2 cut(s) 910, 923
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 2 cut(s) 1029, 1112
ApeKI GCWGC 2 cut(s) 44, 529
ApoI RAATTY 1 cut(s) 1214
ArsI GACNNNNNNTTYG 2 cut(s) 852, 884
Asp718I GGTACC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 77, 153
AsuC2I CCSGG 4 cut(s) 341, 549, 550, 620
AsuHPI GGTGA 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 2 cut(s) 77, 153
BaeI ACNNNNGTAYC 2 cut(s) 649, 682
BamHI GGATCC 1 cut(s) 915
BanI GGYRCC 2 cut(s) 543, 640
BbsI GAAGAC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 31, 541
BccI CCATC 4 cut(s) 328, 666, 784, 1151
BceAI ACGGC 1 cut(s) 444
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 1 cut(s) 908
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 2 cut(s) 166, 192
BcnI CCSGG 4 cut(s) 341, 549, 550, 620
BcoDI GTCTC 3 cut(s) 18, 843, 874
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 303, 443
BfmI CTRYAG 2 cut(s) 291, 1155
BfuAI ACCTGC 1 cut(s) 628
BfuI GTATCC 1 cut(s) 868
BglII AGATCT 1 cut(s) 367
BisI GCNGC 2 cut(s) 45, 530
BlsI GCNGC 2 cut(s) 46, 531
Bme1390I CCNGG 5 cut(s) 341, 549, 550, 620, 908
Bme18I GGWCC 2 cut(s) 77, 153
BmeRI GACNNNNNGTC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 77, 153
BmiI GGNNCC 5 cut(s) 78, 545, 642, 824, 917
BmrFI CCNGG 5 cut(s) 341, 549, 550, 620, 908
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 840, 872
BpmI CTGGAG 1 cut(s) 66
BpuMI CCSGG 4 cut(s) 341, 549, 550, 620
BsaI GGTCTC 2 cut(s) 18, 843
BsaJI CCNNGG 5 cut(s) 377, 547, 548, 619, 737
BsaWI WCCGGW 3 cut(s) 351, 595, 654
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse1I ACTGG 3 cut(s) 818, 917, 1115
Bse3DI GCAATG 2 cut(s) 114, 1046
BseBI CCWGG 1 cut(s) 908
BseDI CCNNGG 5 cut(s) 377, 547, 548, 619, 737
BseGI GGATG 2 cut(s) 795, 903
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMI GCAATG 2 cut(s) 114, 1046
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 3 cut(s) 818, 917, 1115
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 2 cut(s) 31, 541
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 1031, 1114
BshNI GGYRCC 2 cut(s) 543, 640
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 6 cut(s) 341, 352, 549, 596, 619, 655
BslFI GGGAC 3 cut(s) 90, 416, 636
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 3 cut(s) 18, 843, 874
BsmBI CGTCTC 1 cut(s) 874
BsmFI GGGAC 3 cut(s) 90, 416, 636
BsmI GAATGC 2 cut(s) 895, 943
BsnI GGCC 2 cut(s) 1031, 1114
Bso31I GGTCTC 2 cut(s) 18, 843
BsoBI CYCGRG 1 cut(s) 548
Bsp143I GATC 6 cut(s) 166, 192, 307, 367, 605, 915
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 2 cut(s) 9, 647
BspANI GGCC 2 cut(s) 1031, 1114
BspCNI CTCAG 1 cut(s) 712
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 5 cut(s) 78, 545, 642, 824, 917
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 2 cut(s) 910, 923
BspT107I GGYRCC 2 cut(s) 543, 640
BspTNI GGTCTC 2 cut(s) 18, 843
BsrDI GCAATG 2 cut(s) 114, 1046
BsrI ACTGG 3 cut(s) 818, 917, 1115
BssECI CCNNGG 5 cut(s) 377, 547, 548, 619, 737
BssMI GATC 6 cut(s) 166, 192, 307, 367, 605, 915
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 908
Bst4CI ACNGT 5 cut(s) 245, 332, 584, 662, 738
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 2 cut(s) 536, 720
BstDSI CCRYGG 2 cut(s) 377, 737
BstF5I GGATG 2 cut(s) 795, 903
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 6 cut(s) 169, 195, 310, 370, 608, 918
BstMAI GTCTC 3 cut(s) 18, 843, 874
BstMBI GATC 6 cut(s) 166, 192, 307, 367, 605, 915
BstNI CCWGG 1 cut(s) 908
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 5 cut(s) 339, 547, 548, 618, 906
BstSFI CTRYAG 2 cut(s) 291, 1155
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 31, 541
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 367, 915
BstYI RGATCY 2 cut(s) 367, 915
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 2 cut(s) 1031, 1114
BtgI CCRYGG 2 cut(s) 377, 737
BtsCI GGATG 2 cut(s) 795, 903
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 895
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 77, 153
Cfr9I CCCGGG 1 cut(s) 548
CseI GACGC 1 cut(s) 643
Csp6I GTAC 6 cut(s) 333, 478, 544, 557, 658, 1021
CviAII CATG 4 cut(s) 336, 378, 406, 1002
CviQI GTAC 6 cut(s) 333, 478, 544, 557, 658, 1021
DdeI CTNAG 2 cut(s) 536, 720
DpnI GATC 6 cut(s) 168, 194, 309, 369, 607, 917
DpnII GATC 6 cut(s) 166, 192, 307, 367, 605, 915
DriI GACNNNNNGTC 1 cut(s) 322
Eam1105I GACNNNNNGTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 2 cut(s) 18, 843
Eco47I GGWCC 2 cut(s) 77, 153
Eco57I CTGAAG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 906
EcoT14I CCWWGG 1 cut(s) 377
EcoT22I ATGCAT 2 cut(s) 811, 1003
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 874
FaeI CATG 4 cut(s) 339, 381, 409, 1005
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FaqI GGGAC 3 cut(s) 90, 416, 636
FatI CATG 4 cut(s) 335, 377, 405, 1001
FauI CCCGC 1 cut(s) 2
FauNDI CATATG 1 cut(s) 515
FbaI TGATCA 2 cut(s) 166, 192
FblI GTMKAC 1 cut(s) 1090
Fnu4HI GCNGC 2 cut(s) 45, 530
FokI GGATG 2 cut(s) 802, 890
Fsp4HI GCNGC 2 cut(s) 45, 530
FspBI CTAG 2 cut(s) 303, 443
GlaI GCGC 1 cut(s) 8
GluI GCNGC 2 cut(s) 45, 530
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 1031, 1114
HapII CCGG 6 cut(s) 341, 352, 549, 596, 619, 655
HgaI GACGC 1 cut(s) 643
HhaI GCGC 1 cut(s) 9
Hin1II CATG 4 cut(s) 339, 381, 409, 1005
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 4 cut(s) 393, 839, 923, 1037
HpaII CCGG 6 cut(s) 341, 352, 549, 596, 619, 655
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 2 cut(s) 510, 1091
Hpy188I TCNGA 4 cut(s) 162, 605, 874, 949
Hpy188III TCNNGA 2 cut(s) 139, 314
Hpy8I GTNNAC 2 cut(s) 510, 1091
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 5 cut(s) 245, 332, 584, 662, 738
HpyCH4IV ACGT 2 cut(s) 272, 867
HpyF3I CTNAG 2 cut(s) 536, 720
HpySE526I ACGT 2 cut(s) 272, 867
Hsp92II CATG 4 cut(s) 339, 381, 409, 1005
HspAI GCGC 1 cut(s) 7
KpnI GGTACC 1 cut(s) 547
Ksp22I TGATCA 2 cut(s) 166, 192
Kzo9I GATC 6 cut(s) 166, 192, 307, 367, 605, 915
LmnI GCTCC 2 cut(s) 568, 780
Lsp1109I GCAGC 2 cut(s) 31, 541
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 303, 443
MaeII ACGT 2 cut(s) 272, 867
MaeIII GTNAC 3 cut(s) 770, 952, 1042
MalI GATC 6 cut(s) 168, 194, 309, 369, 607, 917
MboI GATC 6 cut(s) 166, 192, 307, 367, 605, 915
MboII GAAGA 6 cut(s) 88, 377, 436, 775, 1069, 1218
MflI RGATCY 2 cut(s) 367, 915
MluCI AATT 3 cut(s) 52, 283, 1214
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 9 cut(s) 73, 90, 408, 534, 769, 863, 866, 985, 1204
Mph1103I ATGCAT 2 cut(s) 811, 1003
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 3 cut(s) 271, 948, 1068
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 6 cut(s) 341, 352, 549, 596, 619, 655
MspR9I CCNGG 5 cut(s) 341, 549, 550, 620, 908
Mva1269I GAATGC 2 cut(s) 895, 943
MvaI CCWGG 1 cut(s) 908
MvnI CGCG 1 cut(s) 9
NciI CCSGG 4 cut(s) 341, 549, 550, 620
NcoI CCATGG 1 cut(s) 377
NdeI CATATG 1 cut(s) 515
NdeII GATC 6 cut(s) 166, 192, 307, 367, 605, 915
NlaIII CATG 4 cut(s) 339, 381, 409, 1005
NlaIV GGNNCC 5 cut(s) 78, 545, 642, 824, 917
NsiI ATGCAT 2 cut(s) 811, 1003
NspI RCATGY 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 628
PctI GAATGC 2 cut(s) 895, 943
PfeI GAWTC 4 cut(s) 393, 839, 923, 1037
PfoI TCCNGGA 1 cut(s) 906
PkrI GCNGC 2 cut(s) 46, 531
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 906
PspGI CCWGG 1 cut(s) 906
PspN4I GGNNCC 5 cut(s) 78, 545, 642, 824, 917
PspPI GGNCC 2 cut(s) 77, 153
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 2 cut(s) 367, 915
RsaI GTAC 6 cut(s) 334, 479, 545, 558, 659, 1022
RsaNI GTAC 6 cut(s) 333, 478, 544, 557, 658, 1021
RseI CAYNNNNRTG 3 cut(s) 271, 948, 1068
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 45, 530
Sau3AI GATC 6 cut(s) 166, 192, 307, 367, 605, 915
Sau96I GGNCC 2 cut(s) 77, 153
ScrFI CCNGG 5 cut(s) 341, 549, 550, 620, 908
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 2 cut(s) 291, 1155
SinI GGWCC 2 cut(s) 77, 153
SmaI CCCGGG 1 cut(s) 550
SmiMI CAYNNNNRTG 3 cut(s) 271, 948, 1068
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 3 cut(s) 52, 283, 1214
SsiI CCGC 2 cut(s) 9, 647
SspMI CTAG 2 cut(s) 303, 443
StyD4I CCNGG 5 cut(s) 339, 547, 548, 618, 906
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 5 cut(s) 245, 332, 584, 662, 738
TaiI ACGT 2 cut(s) 275, 870
TaqI TCGA 2 cut(s) 228, 632
TasI AATT 3 cut(s) 52, 283, 1214
TatI WGTACW 1 cut(s) 1020
TfiI GAWTC 4 cut(s) 393, 839, 923, 1037
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseI GCWGC 2 cut(s) 44, 529
TspDTI ATGAA 1 cut(s) 892
TspMI CCCGGG 1 cut(s) 548
VpaK11BI GGWCC 2 cut(s) 77, 153
XapI RAATTY 1 cut(s) 1214
XceI RCATGY 1 cut(s) 339
XmaI CCCGGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 1090
XspI CTAG 2 cut(s) 303, 443
Zsp2I ATGCAT 2 cut(s) 811, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.