FvH4_5g02620

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
1560346 .. 1566330
5985 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02620.t1

Sequence Viewer

Length: 1632 bp
ATGGATTTGCAGAGGCTTTGTGGGTTGGTGTTTGTTTCAGCTTTGATTCTACTGGGGTGTAATCACAGCTCTGTAGAAGCTGGGGATATAGTGCATGATGATGCTTCAGCTCCAAAGAAGCCTGGTTGTGAGAACGATTTCGTTTTGGTGAAGGTACAAACTTGGGTTGATGGTGTTGAGGCTAGTGAGTTTGTTGGTGTGGGTGCTAGATTTGGAAGAACCATTGAATCAAAAGAGAAGAAGGCAAACCAAACTCGCCTTATTCTTTCAAATCCTCGAGATTGCTGCAGTCCACCGGAAAATAAGTTTGCTCGAGATGTCATTGTGGTCGACCGAGGCAACTGCAAATTCACAACCAAAGCAAATAATGCTGAAGCTGCTAATGCCTCAGCTATCCTAATTATAAATAACCAGAAAGAACTTTACAAGATGGTGTGTGAGCCAGATGAAACTGCTCTAGATATACACATACCTGCTGTCATGCTCCCACAGGATGCTGGCACGACCTTGGAAAACATGTTAATGAGCAATTCAGTGGTGTCTGTGCAGTTGTACTCTCCACAACGGCCCGTGGTTGACATTGCAGAAGTATTTTTATGGCTGATGGCAGTTGGCACCATCTTGTGTGCATCTTATTGGTCTGCATGGAGTGCCAGAGAAGCAGCTATTGAACATGAAAATTTGTTAAAGGATGCTGCTGATGAAATAACAACTGCGAAAGCACCTTTAGGTGCTAGTATCGTAGACATCAGCACGACATCAGCAGTCTTGTTCGTCATTATTGCTTCATGCTTTTTGGTCATACTCTACAAGCTTATGTCAGCCTGGTTCATTGAGCTTTTGGTTGTTCTTTTCTGTATAGGTGGTGTAGAGGGCTTGCAAACTTGCTTGGTGTCTCTGTTGTCGAGGTGGTTTAAACGGACTGGAGAGGCATACATCAAAGTACCTATCCTGGGAGCAATCTCATACTTAACGTTGGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTCTCTGGGCAGTTTTTCGCACTATTTCCTTTGCCTGGATTGGCCAAGATATACTGGGAATTGCACTGATAATCACAGTTTTGCAAATTGTTCGTATACCCAATCTCAAGGTGGGTACGGTACTCCTCAGTTGTGCATTTTTGTATGACATCTTTTGGGTCTTTGTTTCTAAGAAGGTGTTCCATGAAAGTGTGATGATTGTGGTAGCTCGTGGTGACAGAAGTGGAGAGGACGGTATTCCAATGCTACTCAAGATCCCCCGCATGTTTGACCCATGGGGTGGTTACAGCATTATAGGATTTGGTGACATCCTATTACCAGGCCTGCTTGTGGCGTTCTCACTCAGGTATGATTGGTTGGCAAGTAAGAGTCTGCGAGCTGGGTACTTCTTGTGGGCAATGATTGCTTATGGATTAGGTCTTCTCATCACATATGTGGCATTAAACTTGATGGATGGGCATGGCCAACCGGCACTACTTTACATTGTTCCTTTTACACTAGGAACTTTATTGACATTAGGGAAAAAGAGAGGTGACTTACCGATTCTGTGGAGTAGAGGAGAACCGGAAAGGCTATGCCCGCATGTCCGACTCGAACACAGTCAAGAACTGAGGGATGAATAA

Protein Analysis

544

Amino Acids

59.78

Weight (kDa)

5.73

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 92 - 170 2.4e-12 PA domain
Peptidase_A22B PF04258 247 - 524 4.8e-102 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 1 cut(s) 1289
AccI GTMKAC 3 cut(s) 330, 744, 1105
AciI CCGC 2 cut(s) 1270, 1589
AclI AACGTT 1 cut(s) 974
AclWI GGATC 1 cut(s) 1258
AcoI YGGCCR 2 cut(s) 1051, 1471
AcsI RAATTY 2 cut(s) 347, 679
AcuI CTGAAG 2 cut(s) 90, 393
AfaI GTAC 6 cut(s) 156, 554, 945, 1126, 1131, 1394
AfiI CCNNNNNNNGG 4 cut(s) 953, 1044, 1289, 1339
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 3 cut(s) 227, 270, 671
AjnI CCWGG 5 cut(s) 121, 824, 951, 1043, 1327
AleI CACNNNNGTG 1 cut(s) 1442
Alw26I GTCTC 1 cut(s) 900
AlwI GGATC 1 cut(s) 1258
Ama87I CYCGRG 2 cut(s) 276, 312
AoxI GGCC 4 cut(s) 566, 1051, 1330, 1471
ApeKI GCWGC 4 cut(s) 285, 377, 662, 695
ApoI RAATTY 2 cut(s) 347, 679
Asp700I GAANNNNTTC 2 cut(s) 137, 1187
AspS9I GGNCC 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 160, 1235, 1325, 1553
AvaI CYCGRG 2 cut(s) 276, 312
BalI TGGCCA 2 cut(s) 1053, 1473
BanI GGYRCC 1 cut(s) 614
BauI CACGAG 1 cut(s) 1218
BbsI GAAGAC 1 cut(s) 1421
BbvCI CCTCAGC 1 cut(s) 388
BbvI GCAGC 4 cut(s) 272, 364, 674, 682
BccI CCATC 6 cut(s) 164, 424, 598, 626, 1453, 1457
BceAI ACGGC 1 cut(s) 581
BcgI CGANNNNNNTGC 6 cut(s) 267, 301, 324, 358, 1082, 1116
BciT130I CCWGG 5 cut(s) 123, 826, 953, 1045, 1329
BcoDI GTCTC 1 cut(s) 900
BfaI CTAG 5 cut(s) 183, 207, 458, 735, 1508
BfmI CTRYAG 2 cut(s) 72, 286
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 4 cut(s) 286, 378, 663, 696
BlsI GCNGC 4 cut(s) 287, 379, 664, 697
Bme1390I CCNGG 5 cut(s) 123, 826, 953, 1045, 1329
BmeT110I CYCGRG 2 cut(s) 276, 312
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 5 cut(s) 123, 826, 953, 1045, 1329
BmrI ACTGGG 2 cut(s) 62, 1073
BmsI GCATC 4 cut(s) 91, 484, 638, 682
BmuI ACTGGG 2 cut(s) 62, 1073
BpiI GAAGAC 1 cut(s) 1421
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 388
BpuEI CTTGAG 2 cut(s) 1100, 1244
BsaJI CCNNGG 5 cut(s) 334, 507, 570, 952, 1283
BsaWI WCCGGW 2 cut(s) 295, 1573
Bsc4I CCNNNNNNNGG 4 cut(s) 953, 1044, 1289, 1339
Bse118I RCCGGY 1 cut(s) 1477
Bse1I ACTGG 3 cut(s) 57, 928, 1068
Bse3DI GCAATG 2 cut(s) 579, 1413
BseBI CCWGG 5 cut(s) 123, 826, 953, 1045, 1329
BseDI CCNNGG 5 cut(s) 334, 507, 570, 952, 1283
BseGI GGATG 5 cut(s) 499, 697, 1317, 1468, 1630
BseLI CCNNNNNNNGG 4 cut(s) 953, 1044, 1289, 1339
BseMI GCAATG 2 cut(s) 579, 1413
BseMII CTCAG 4 cut(s) 402, 1150, 1366, 1610
BseNI ACTGG 3 cut(s) 57, 928, 1068
BseRI GAGGAG 2 cut(s) 1124, 1581
BseXI GCAGC 4 cut(s) 272, 364, 674, 682
BseYI CCCAGC 2 cut(s) 80, 1388
BsgI GTGCAG 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 4 cut(s) 568, 1053, 1332, 1473
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 334
BsiHKCI CYCGRG 2 cut(s) 276, 312
BsiSI CCGG 3 cut(s) 296, 1478, 1574
BslI CCNNNNNNNGG 4 cut(s) 953, 1044, 1289, 1339
BsmAI GTCTC 1 cut(s) 900
BsnI GGCC 4 cut(s) 568, 1053, 1332, 1473
BsoBI CYCGRG 2 cut(s) 276, 312
Bsp143I GATC 1 cut(s) 1263
Bsp19I CCATGG 1 cut(s) 1283
BspACI CCGC 2 cut(s) 1270, 1589
BspANI GGCC 4 cut(s) 568, 1053, 1332, 1473
BspCNI CTCAG 4 cut(s) 401, 1149, 1365, 1611
BspLI GGNNCC 1 cut(s) 616
BspMAI CTGCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 1258
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 2 cut(s) 579, 1413
BsrFI RCCGGY 1 cut(s) 1477
BsrI ACTGG 3 cut(s) 57, 928, 1068
BssAI RCCGGY 1 cut(s) 1477
BssECI CCNNGG 5 cut(s) 334, 507, 570, 952, 1283
BssMI GATC 1 cut(s) 1263
BssNAI GTATAC 1 cut(s) 1106
BssSI CACGAG 1 cut(s) 1218
BssT1I CCWWGG 2 cut(s) 507, 1283
Bst1107I GTATAC 1 cut(s) 1106
Bst2BI CACGAG 1 cut(s) 1218
Bst2UI CCWGG 5 cut(s) 123, 826, 953, 1045, 1329
Bst4CI ACNGT 4 cut(s) 1087, 1129, 1244, 1610
BstAPI GCANNNNNTGC 3 cut(s) 368, 650, 1412
BstC8I GCNNGC 5 cut(s) 499, 878, 1334, 1386, 1589
BstDEI CTNAG 5 cut(s) 388, 1136, 1179, 1352, 1619
BstDSI CCRYGG 2 cut(s) 570, 1283
BstF5I GGATG 5 cut(s) 499, 697, 1317, 1468, 1630
BstKTI GATC 1 cut(s) 1266
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 1 cut(s) 1263
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 7 cut(s) 368, 377, 383, 650, 659, 1412, 1588
BstNI CCWGG 5 cut(s) 123, 826, 953, 1045, 1329
BstNSI RCATGY 3 cut(s) 520, 1276, 1595
BstSCI CCNGG 5 cut(s) 121, 824, 951, 1043, 1327
BstSFI CTRYAG 2 cut(s) 72, 286
BstV1I GCAGC 4 cut(s) 272, 364, 674, 682
BstV2I GAAGAC 1 cut(s) 1421
BstX2I RGATCY 1 cut(s) 1263
BstYI RGATCY 1 cut(s) 1263
BstZ17I GTATAC 1 cut(s) 1106
BsuRI GGCC 4 cut(s) 568, 1053, 1332, 1473
BtgI CCRYGG 2 cut(s) 570, 1283
BtsCI GGATG 5 cut(s) 499, 697, 1317, 1468, 1630
BtsIMutI CAGTG 2 cut(s) 540, 1073
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 5 cut(s) 499, 878, 1334, 1386, 1589
Cfr10I RCCGGY 1 cut(s) 1477
Cfr13I GGNCC 1 cut(s) 567
Csp6I GTAC 6 cut(s) 155, 553, 944, 1125, 1130, 1393
CviQI GTAC 6 cut(s) 155, 553, 944, 1125, 1130, 1393
DdeI CTNAG 5 cut(s) 388, 1136, 1179, 1352, 1619
DpnI GATC 1 cut(s) 1265
DpnII GATC 1 cut(s) 1263
DraI TTTAAA 1 cut(s) 916
EaeI YGGCCR 2 cut(s) 1051, 1471
Eco130I CCWWGG 2 cut(s) 507, 1283
Eco147I AGGCCT 1 cut(s) 1332
Eco57I CTGAAG 2 cut(s) 90, 393
Eco88I CYCGRG 2 cut(s) 276, 312
EcoRII CCWGG 5 cut(s) 121, 824, 951, 1043, 1327
EcoT14I CCWWGG 2 cut(s) 507, 1283
ErhI CCWWGG 2 cut(s) 507, 1283
FauI CCCGC 2 cut(s) 1277, 1596
FauNDI CATATG 1 cut(s) 1441
FblI GTMKAC 3 cut(s) 330, 744, 1105
Fnu4HI GCNGC 4 cut(s) 286, 378, 663, 696
FokI GGATG 4 cut(s) 506, 704, 1304, 1475
Fsp4HI GCNGC 4 cut(s) 286, 378, 663, 696
FspBI CTAG 5 cut(s) 183, 207, 458, 735, 1508
GluI GCNGC 4 cut(s) 286, 378, 663, 696
GsaI CCCAGC 2 cut(s) 84, 1392
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 4 cut(s) 568, 1053, 1332, 1473
HapII CCGG 3 cut(s) 296, 1478, 1574
HincII GTYRAC 2 cut(s) 331, 577
HindII GTYRAC 2 cut(s) 331, 577
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 5 cut(s) 46, 227, 1378, 1552, 1599
HpaII CCGG 3 cut(s) 296, 1478, 1574
HphI GGTGA 4 cut(s) 160, 1235, 1325, 1553
Hpy166II GTNNAC 5 cut(s) 293, 331, 577, 745, 1106
Hpy188I TCNGA 1 cut(s) 1598
Hpy188III TCNNGA 5 cut(s) 278, 314, 458, 1261, 1613
Hpy8I GTNNAC 5 cut(s) 293, 331, 577, 745, 1106
HpyAV CCTTC 3 cut(s) 145, 235, 1177
HpyCH4III ACNGT 4 cut(s) 1087, 1129, 1244, 1610
HpyCH4IV ACGT 1 cut(s) 974
HpyF10VI GCNNNNNNNGC 7 cut(s) 368, 377, 383, 650, 659, 1412, 1588
HpyF3I CTNAG 5 cut(s) 388, 1136, 1179, 1352, 1619
HpySE526I ACGT 1 cut(s) 974
Kzo9I GATC 1 cut(s) 1263
LmnI GCTCC 3 cut(s) 115, 489, 956
Lsp1109I GCAGC 4 cut(s) 272, 364, 674, 682
LweI GCATC 4 cut(s) 91, 484, 638, 682
MaeI CTAG 5 cut(s) 183, 207, 458, 735, 1508
MaeII ACGT 1 cut(s) 974
MaeIII GTNAC 4 cut(s) 1223, 1292, 1313, 1541
MalI GATC 1 cut(s) 1265
MboI GATC 1 cut(s) 1263
MboII GAAGA 3 cut(s) 228, 250, 1421
MflI RGATCY 1 cut(s) 1263
MlsI TGGCCA 2 cut(s) 1053, 1473
MluCI AATT 6 cut(s) 347, 399, 529, 679, 1068, 1095
MluNI TGGCCA 2 cut(s) 1053, 1473
MlyI GAGTC 2 cut(s) 1387, 1593
MmeI TCCRAC 1 cut(s) 1621
Mox20I TGGCCA 2 cut(s) 1053, 1473
MroXI GAANNNNTTC 2 cut(s) 137, 1187
MscI TGGCCA 2 cut(s) 1053, 1473
MseI TTAA 5 cut(s) 521, 686, 915, 971, 1451
MslI CAYNNNNRTG 4 cut(s) 99, 521, 1197, 1442
Msp20I TGGCCA 2 cut(s) 1053, 1473
MspI CCGG 3 cut(s) 296, 1478, 1574
MspR9I CCNGG 5 cut(s) 123, 826, 953, 1045, 1329
MssI GTTTAAAC 1 cut(s) 916
MvaI CCWGG 5 cut(s) 123, 826, 953, 1045, 1329
MwoI GCNNNNNNNGC 7 cut(s) 368, 377, 383, 650, 659, 1412, 1588
NcoI CCATGG 1 cut(s) 1283
NdeI CATATG 1 cut(s) 1441
NdeII GATC 1 cut(s) 1263
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 3 cut(s) 1223, 1313, 1541
NspI RCATGY 3 cut(s) 520, 1276, 1595
OliI CACNNNNGTG 1 cut(s) 1442
PaeR7I CTCGAG 2 cut(s) 276, 312
PceI AGGCCT 1 cut(s) 1332
PciI ACATGT 1 cut(s) 516
PdmI GAANNNNTTC 2 cut(s) 137, 1187
PfeI GAWTC 3 cut(s) 46, 227, 1552
PflMI CCANNNNNTGG 1 cut(s) 1289
PkrI GCNGC 4 cut(s) 287, 379, 664, 697
PleI GAGTC 2 cut(s) 1386, 1593
PmeI GTTTAAAC 1 cut(s) 916
PpsI GAGTC 2 cut(s) 1386, 1593
PscI ACATGT 1 cut(s) 516
PsiI TTATAA 1 cut(s) 404
Psp1406I AACGTT 1 cut(s) 974
Psp6I CCWGG 5 cut(s) 121, 824, 951, 1043, 1327
PspFI CCCAGC 2 cut(s) 80, 1388
PspGI CCWGG 5 cut(s) 121, 824, 951, 1043, 1327
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 1 cut(s) 567
PstI CTGCAG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 1263
RsaI GTAC 6 cut(s) 156, 554, 945, 1126, 1131, 1394
RsaNI GTAC 6 cut(s) 155, 553, 944, 1125, 1130, 1393
RseI CAYNNNNRTG 4 cut(s) 99, 521, 1197, 1442
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 5 cut(s) 521, 686, 915, 971, 1451
SatI GCNGC 4 cut(s) 286, 378, 663, 696
Sau3AI GATC 1 cut(s) 1263
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 2 cut(s) 1387, 1593
ScrFI CCNGG 5 cut(s) 123, 826, 953, 1045, 1329
SfaNI GCATC 4 cut(s) 91, 484, 638, 682
SfcI CTRYAG 2 cut(s) 72, 286
Sfr274I CTCGAG 2 cut(s) 276, 312
SlaI CTCGAG 2 cut(s) 276, 312
SmiMI CAYNNNNRTG 4 cut(s) 99, 521, 1197, 1442
SmlI CTYRAG 4 cut(s) 276, 312, 1115, 1259
SmoI CTYRAG 4 cut(s) 276, 312, 1115, 1259
Sse9I AATT 6 cut(s) 347, 399, 529, 679, 1068, 1095
SseBI AGGCCT 1 cut(s) 1332
SsiI CCGC 2 cut(s) 1270, 1589
SspMI CTAG 5 cut(s) 183, 207, 458, 735, 1508
StuI AGGCCT 1 cut(s) 1332
StyD4I CCNGG 5 cut(s) 121, 824, 951, 1043, 1327
StyI CCWWGG 2 cut(s) 507, 1283
TaaI ACNGT 4 cut(s) 1087, 1129, 1244, 1610
TaiI ACGT 1 cut(s) 977
TaqI TCGA 5 cut(s) 277, 313, 330, 905, 1602
TaqII GACCGA 1 cut(s) 348
TasI AATT 6 cut(s) 347, 399, 529, 679, 1068, 1095
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 3 cut(s) 46, 227, 1552
Tru1I TTAA 5 cut(s) 521, 686, 915, 971, 1451
Tru9I TTAA 5 cut(s) 521, 686, 915, 971, 1451
TscAI CASTG 2 cut(s) 540, 1080
TseFI GTSAC 3 cut(s) 1223, 1313, 1541
TseI GCWGC 4 cut(s) 285, 377, 662, 695
Tsp45I GTSAC 3 cut(s) 1223, 1313, 1541
TspDTI ATGAA 6 cut(s) 462, 690, 717, 777, 820, 1209
TspGWI ACGGA 1 cut(s) 934
TspRI CASTG 2 cut(s) 540, 1080
Van91I CCANNNNNTGG 1 cut(s) 1289
XapI RAATTY 2 cut(s) 347, 679
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 3 cut(s) 520, 1276, 1595
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XhoI CTCGAG 2 cut(s) 276, 312
XmiI GTMKAC 3 cut(s) 330, 744, 1105
XmnI GAANNNNTTC 2 cut(s) 137, 1187
XspI CTAG 5 cut(s) 183, 207, 458, 735, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.