FvH4_5g04390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018436
Physical Location & Seq
Reverse (-)
2580833 .. 2582040
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04390.t1

Sequence Viewer

Length: 450 bp
ATGGCCTCAATCCAATGCCACAGGCCTACCAATGAGGCATGCCAGCAAAAATGCCACAAGCCTAGCAGCAACCAGAGCTCATCTCCGGGACAAAAGGTGTCTGAGATGGCTGGCTTCTTGAAAGGAGGAGGTCATCGTATGCATGGACAACCACACACCACCACTGCATGCTACAGCGAAACCGTAACCTACAAGACCTCTGACGAACACCAGGGCTTGGGCGGCCCGAAGCACCACGTAGGTAGTACTACTGATCATGGGGTGCTTGCATGCAATGGAAAGACCAAGCAGACTAGAGGTGATCGCCACATGAAGGAGAGAGACGGCAGAAATCTGTTTCAGAAGATCAAGGATAGGATTTCTGGTGATAGCAGCTGCAGTGACGACAGTGAGAGCGACAGTGACAACGAAGGCAACTGCCGCAAACACAAGAACAAAATGCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.32

Weight (kDa)

8.86

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04390
malus_domestica MD14G1123200.v1.1
prunus_persica Prupe.5G117100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195171
rosa_laevigata RLG00000004140
rosa_roxburghii Rroxscaffold_3G00260700
rosa_samantha Rh7AG148700 Rh7CG153300 Rh7DG149800
rosa_wichuraiana Rw7G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 217
AciI CCGC 2 cut(s) 222, 421
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 217, 313
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 78, 375
AluI AGCT 2 cut(s) 78, 375
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 315
AoxI GGCC 3 cut(s) 3, 23, 223
ApeKI GCWGC 3 cut(s) 66, 372, 375
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 311, 377
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 3 cut(s) 78, 362, 384
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 2 cut(s) 63, 294
BfmI CTRYAG 2 cut(s) 172, 376
BisI GCNGC 5 cut(s) 67, 223, 373, 376, 421
BlsI GCNGC 5 cut(s) 68, 224, 374, 377, 422
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 87, 212
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 87, 212
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 313
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 217, 313
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 78, 362, 384
BshFI GGCC 3 cut(s) 5, 25, 225
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 217, 313
BsmAI GTCTC 1 cut(s) 315
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 3 cut(s) 5, 25, 225
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 3 cut(s) 253, 301, 345
BspACI CCGC 2 cut(s) 222, 421
BspANI GGCC 3 cut(s) 5, 25, 225
BspCNI CTCAG 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 3 cut(s) 253, 301, 345
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 184, 389, 401
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 7 cut(s) 40, 44, 112, 169, 267, 271, 444
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 3 cut(s) 256, 304, 348
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 3 cut(s) 253, 301, 345
BstMWI GCNNNNNNNGC 3 cut(s) 75, 222, 420
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 4 cut(s) 42, 171, 273, 446
BstSCI CCNGG 2 cut(s) 85, 210
BstSFI CTRYAG 2 cut(s) 172, 376
BstV1I GCAGC 3 cut(s) 78, 362, 384
BsuRI GGCC 3 cut(s) 5, 25, 225
BtsI GCAGTG 2 cut(s) 162, 385
BtsIMutI CAGTG 4 cut(s) 162, 385, 394, 406
Cac8I GCNNGC 7 cut(s) 40, 44, 112, 169, 267, 271, 444
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 246
CviAII CATG 8 cut(s) 39, 143, 168, 257, 270, 310, 443, 447
CviJI RGCY 9 cut(s) 5, 25, 61, 78, 110, 114, 216, 225, 375
CviKI_1 RGCY 9 cut(s) 5, 25, 61, 78, 110, 114, 216, 225, 375
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 255, 303, 347
DpnII GATC 3 cut(s) 253, 301, 345
Ecl136II GAGCTC 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 210
EcoT22I ATGCAT 3 cut(s) 144, 444, 448
EcoT38I GRGCYC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 8 cut(s) 42, 146, 171, 260, 273, 313, 446, 450
FaiI YATR 9 cut(s) 40, 140, 144, 169, 258, 271, 311, 444, 448
FaqI GGGAC 1 cut(s) 102
FatI CATG 8 cut(s) 38, 142, 167, 256, 269, 309, 442, 446
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 5 cut(s) 67, 223, 373, 376, 421
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 5 cut(s) 67, 223, 373, 376, 421
FspBI CTAG 2 cut(s) 63, 294
GluI GCNGC 5 cut(s) 67, 223, 373, 376, 421
HaeIII GGCC 3 cut(s) 5, 25, 225
HapII CCGG 1 cut(s) 86
Hin1II CATG 8 cut(s) 42, 146, 171, 260, 273, 313, 446, 450
HpaII CCGG 1 cut(s) 86
HphI GGTGA 2 cut(s) 311, 377
Hpy188I TCNGA 3 cut(s) 103, 202, 342
Hpy188III TCNNGA 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 307, 404
HpyCH4III ACNGT 3 cut(s) 184, 389, 401
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 7 cut(s) 142, 167, 269, 273, 378, 442, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 222, 420
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 8 cut(s) 42, 146, 171, 260, 273, 313, 446, 450
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 253, 301, 345
LpnPI CCDG 8 cut(s) 7, 56, 86, 96, 99, 197, 224, 348
Lsp1109I GCAGC 3 cut(s) 78, 362, 384
MaeI CTAG 2 cut(s) 63, 294
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 184, 380, 401
MalI GATC 3 cut(s) 255, 303, 347
MboI GATC 3 cut(s) 253, 301, 345
MboII GAAGA 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 80
MnlI CCTC 6 cut(s) 16, 28, 119, 122, 208, 290
Mph1103I ATGCAT 3 cut(s) 144, 444, 448
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 87, 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 75, 222, 420
NciI CCSGG 1 cut(s) 87
NdeII GATC 3 cut(s) 253, 301, 345
NlaIII CATG 8 cut(s) 42, 146, 171, 260, 273, 313, 446, 450
NmuCI GTSAC 2 cut(s) 380, 401
NsiI ATGCAT 3 cut(s) 144, 444, 448
NspI RCATGY 4 cut(s) 42, 171, 273, 446
PaeI GCATGC 4 cut(s) 42, 171, 273, 446
PceI AGGCCT 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 5 cut(s) 68, 224, 374, 377, 422
Ppu21I YACGTR 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacI GAGCTC 1 cut(s) 80
SatI GCNGC 5 cut(s) 67, 223, 373, 376, 421
Sau3AI GATC 3 cut(s) 253, 301, 345
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 87, 212
SduI GDGCHC 1 cut(s) 80
SetI ASST 9 cut(s) 80, 99, 133, 191, 200, 240, 244, 301, 377
SfcI CTRYAG 2 cut(s) 172, 376
SphI GCATGC 4 cut(s) 42, 171, 273, 446
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 2 cut(s) 222, 421
SspMI CTAG 2 cut(s) 63, 294
SstI GAGCTC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 85, 210
TaaI ACNGT 3 cut(s) 184, 389, 401
TaiI ACGT 1 cut(s) 240
TatI WGTACW 1 cut(s) 245
TauI GCSGC 2 cut(s) 225, 423
TscAI CASTG 4 cut(s) 169, 385, 394, 406
TseFI GTSAC 2 cut(s) 380, 401
TseI GCWGC 3 cut(s) 66, 372, 375
Tsp45I GTSAC 2 cut(s) 380, 401
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 4 cut(s) 169, 385, 394, 406
Van91I CCANNNNNTGG 1 cut(s) 217
XceI RCATGY 4 cut(s) 42, 171, 273, 446
XspI CTAG 2 cut(s) 63, 294
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 3 cut(s) 144, 444, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.