Rh7CG153300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018436
Physical Location & Seq
Forward (+)
12634302 .. 12634944
643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG153300.1

Sequence Viewer

Length: 432 bp
ATGGCCTCAATCCAATGCTACAAGCCTGCCAATGAGGCATGCCAGCAAAAATGCCACAAGGCTAGCAGCAACCAGAGCTCATCTCTGGGCCAAAAGGTGTCTGAGATGGCTAGCTTCTTGAAAGGAGGAGGTCATCGTATGCATGGACAACCACACACCACCACCACCACGGAATGCTACAGCCAAACCGTTACCTACAAGACCTCTGAAAACCAGGGCTTGGGCGGCCCCAAGCACCGCGTAGGTTGTACTACTGATGCAGTGGTGGTATGCGATGGAAAGACCAAGAAGACTAGGGGTAATCGCCACACGAAGGACAGAGACAGCAGAAATCTGTTTCAGAAGATCAAGGATGGGATTTCTGGTGATAGCAGCTGCAGTGACAGTGAGAGCGACAGTGACCACGAAGGCAACCGCAAACACAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.58

Weight (kDa)

9.11

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04390
malus_domestica MD14G1123200.v1.1
prunus_persica Prupe.5G117100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195171
rosa_laevigata RLG00000004140
rosa_roxburghii Rroxscaffold_3G00260700
rosa_samantha Rh7AG148700 Rh7CG153300 Rh7DG149800
rosa_wichuraiana Rw7G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 225, 238, 415
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 220, 313
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 78, 114, 375
AluI AGCT 3 cut(s) 78, 114, 375
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 315
AoxI GGCC 3 cut(s) 3, 88, 226
ApeKI GCWGC 3 cut(s) 66, 372, 375
AspS9I GGNCC 2 cut(s) 88, 227
AsuHPI GGTGA 1 cut(s) 377
AsuNHI GCTAGC 2 cut(s) 62, 110
BanII GRGCYC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 3 cut(s) 78, 362, 384
BccI CCATC 3 cut(s) 100, 269, 347
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 3 cut(s) 63, 111, 294
BfmI CTRYAG 2 cut(s) 178, 376
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 4 cut(s) 67, 226, 373, 376
BlsI GCNGC 4 cut(s) 68, 227, 374, 377
Bme1390I CCNGG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 88, 227
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 247
BmtI GCTAGC 2 cut(s) 66, 114
BpiI GAAGAC 1 cut(s) 296
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BsaJI CCNNGG 2 cut(s) 168, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 313
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 168, 214
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 220, 313
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 78, 362, 384
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 5, 90, 228
BsiHKAI GWGCWC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 220, 313
BsmAI GTCTC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 3 cut(s) 5, 90, 228
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 3 cut(s) 225, 238, 415
BspANI GGCC 3 cut(s) 5, 90, 228
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 380
BspOI GCTAGC 2 cut(s) 66, 114
BssECI CCNNGG 2 cut(s) 168, 214
BssMI GATC 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 190, 386, 398
BstC8I GCNNGC 5 cut(s) 27, 40, 44, 64, 112
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 3 cut(s) 35, 75, 225
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 178, 376
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 78, 362, 384
BstV2I GAAGAC 1 cut(s) 296
BsuRI GGCC 3 cut(s) 5, 90, 228
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 2 cut(s) 267, 385
BtsIMutI CAGTG 4 cut(s) 267, 385, 391, 403
Cac8I GCNNGC 5 cut(s) 27, 40, 44, 64, 112
Cfr13I GGNCC 2 cut(s) 88, 227
Csp6I GTAC 1 cut(s) 249
CviAII CATG 2 cut(s) 39, 143
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 2 cut(s) 42, 146
FaiI YATR 4 cut(s) 40, 140, 144, 271
FatI CATG 2 cut(s) 38, 142
Fnu4HI GCNGC 4 cut(s) 67, 226, 373, 376
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 67, 226, 373, 376
FspBI CTAG 3 cut(s) 63, 111, 294
GluI GCNGC 4 cut(s) 67, 226, 373, 376
HaeIII GGCC 3 cut(s) 5, 90, 228
Hin1II CATG 2 cut(s) 42, 146
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 103, 208, 342
Hpy188III TCNNGA 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 307, 401
HpyCH4III ACNGT 3 cut(s) 190, 386, 398
HpyCH4V TGCA 3 cut(s) 142, 260, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 75, 225
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 42, 146
Kzo9I GATC 1 cut(s) 345
LpnPI CCDG 7 cut(s) 39, 56, 71, 86, 200, 227, 348
Lsp1109I GCAGC 3 cut(s) 78, 362, 384
LweI GCATC 1 cut(s) 247
MaeI CTAG 3 cut(s) 63, 111, 294
MaeIII GTNAC 3 cut(s) 190, 380, 398
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 2 cut(s) 301, 355
MhlI GDGCHC 1 cut(s) 80
MnlI CCTC 5 cut(s) 16, 28, 119, 122, 214
Mph1103I ATGCAT 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 35, 75, 225
NdeII GATC 1 cut(s) 345
NheI GCTAGC 2 cut(s) 62, 110
NlaIII CATG 2 cut(s) 42, 146
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 380, 398
NsiI ATGCAT 1 cut(s) 144
NspI RCATGY 1 cut(s) 42
PaeI GCATGC 1 cut(s) 42
PctI GAATGC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 4 cut(s) 68, 227, 374, 377
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 88, 227
PstI CTGCAG 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SacI GAGCTC 1 cut(s) 80
SatI GCNGC 4 cut(s) 67, 226, 373, 376
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 2 cut(s) 88, 227
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 80
SetI ASST 8 cut(s) 80, 99, 116, 133, 197, 206, 247, 377
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 2 cut(s) 178, 376
SphI GCATGC 1 cut(s) 42
SsiI CCGC 3 cut(s) 225, 238, 415
SspMI CTAG 3 cut(s) 63, 111, 294
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 3 cut(s) 190, 386, 398
TatI WGTACW 1 cut(s) 248
TauI GCSGC 1 cut(s) 228
TscAI CASTG 4 cut(s) 267, 385, 391, 403
TseFI GTSAC 2 cut(s) 380, 398
TseI GCWGC 3 cut(s) 66, 372, 375
Tsp45I GTSAC 2 cut(s) 380, 398
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 4 cut(s) 267, 385, 391, 403
Van91I CCANNNNNTGG 1 cut(s) 220
XceI RCATGY 1 cut(s) 42
XspI CTAG 3 cut(s) 63, 111, 294
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.