Rw7G012680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0018436
Physical Location & Seq
Forward (+)
12045009 .. 12049079
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012680.1

Sequence Viewer

Length: 486 bp
ATGGCCTCAATCCAATGCTACAAGCCTGCCAATGAGGCATGCCAGCAAAAATGCCACAAGAGCTCATCCCTGGGCCAAAAGGTGTCTGAGATGGCTAGCTTCTTGAAAGGAGGAGGTCATCGTATGCATGGACAACCACACACCACCACCACCACGGAATGCTACAGCCAAACCGTTACCTACAAGACCTCTGAAAACCAGGGCTTGGGCGGCCCCAAGCACCGCGTAGGTTGTACTACTGATGCAGTGGTGGTATGCGATGGAAAGACCAAGAAGACTAGGGGTAATCGCCACACGAAGGACAGAGACAGCAGAAATCTGTTTCAGAAGATCAAGGATGGGATTTCTGGTGATAGCAGCTGCAGTGACAGTGAGAGCGACAGTGACCACGAAGGCAACCGCAAACACAAGGTAATTACATGCAGTTCATTCGTTATGACATTTATTTTGATTGGATTTTGCAGAACTAAATGCATGCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.67

Weight (kDa)

9.13

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04390
malus_domestica MD14G1123200.v1.1
prunus_persica Prupe.5G117100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195171
rosa_laevigata RLG00000004140
rosa_roxburghii Rroxscaffold_3G00260700
rosa_samantha Rh7AG148700 Rh7CG153300 Rh7DG149800
rosa_wichuraiana Rw7G012680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AccII CGCG 1 cut(s) 225
AciI CCGC 3 cut(s) 210, 223, 400
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 205, 298
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 2 cut(s) 69, 198
AluBI AGCT 3 cut(s) 63, 99, 360
AluI AGCT 3 cut(s) 63, 99, 360
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 3 cut(s) 3, 73, 211
ApeKI GCWGC 2 cut(s) 357, 360
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AspS9I GGNCC 2 cut(s) 73, 212
AsuHPI GGTGA 1 cut(s) 362
AsuNHI GCTAGC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 347, 369
BccI CCATC 3 cut(s) 85, 254, 332
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 71, 200
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 2 cut(s) 96, 279
BfmI CTRYAG 2 cut(s) 163, 361
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 3 cut(s) 211, 358, 361
BlsI GCNGC 3 cut(s) 212, 359, 362
Bme1390I CCNGG 2 cut(s) 71, 200
BmgT120I GGNCC 2 cut(s) 73, 212
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 71, 200
BmsI GCATC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 281
BsaJI CCNNGG 4 cut(s) 69, 70, 153, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 298
BseBI CCWGG 2 cut(s) 71, 200
BseDI CCNNGG 4 cut(s) 69, 70, 153, 199
BseGI GGATG 2 cut(s) 65, 343
BseLI CCNNNNNNNGG 2 cut(s) 205, 298
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 347, 369
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 3 cut(s) 5, 75, 213
BsiHKAI GWGCWC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 205, 298
BsmAI GTCTC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 3 cut(s) 5, 75, 213
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 330
BspACI CCGC 3 cut(s) 210, 223, 400
BspANI GGCC 3 cut(s) 5, 75, 213
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 99
BssECI CCNNGG 4 cut(s) 69, 70, 153, 199
BssMI GATC 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 71, 200
Bst4CI ACNGT 3 cut(s) 175, 371, 383
BstC8I GCNNGC 6 cut(s) 27, 40, 44, 97, 476, 480
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 65, 343
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 35, 60, 210
BstNI CCWGG 2 cut(s) 71, 200
BstNSI RCATGY 4 cut(s) 42, 423, 478, 482
BstSCI CCNGG 2 cut(s) 69, 198
BstSFI CTRYAG 2 cut(s) 163, 361
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 347, 369
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 3 cut(s) 5, 75, 213
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 65, 343
BtsI GCAGTG 2 cut(s) 252, 370
BtsIMutI CAGTG 4 cut(s) 252, 370, 376, 388
Cac8I GCNNGC 6 cut(s) 27, 40, 44, 97, 476, 480
Cfr13I GGNCC 2 cut(s) 73, 212
Csp6I GTAC 1 cut(s) 234
CviAII CATG 6 cut(s) 39, 128, 420, 475, 479, 483
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 69, 198
EcoT22I ATGCAT 4 cut(s) 129, 476, 480, 484
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 6 cut(s) 42, 131, 423, 478, 482, 486
FaiI YATR 9 cut(s) 40, 125, 129, 256, 421, 437, 476, 480, 484
FatI CATG 6 cut(s) 38, 127, 419, 474, 478, 482
Fnu4HI GCNGC 3 cut(s) 211, 358, 361
FokI GGATG 2 cut(s) 52, 350
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 211, 358, 361
FspBI CTAG 2 cut(s) 96, 279
GluI GCNGC 3 cut(s) 211, 358, 361
HaeIII GGCC 3 cut(s) 5, 75, 213
Hin1II CATG 6 cut(s) 42, 131, 423, 478, 482, 486
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 3 cut(s) 88, 193, 327
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 292, 386
HpyCH4III ACNGT 3 cut(s) 175, 371, 383
HpyCH4V TGCA 8 cut(s) 127, 245, 363, 423, 462, 474, 478, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 60, 210
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 6 cut(s) 42, 131, 423, 478, 482, 486
Kzo9I GATC 1 cut(s) 330
LpnPI CCDG 7 cut(s) 39, 56, 56, 83, 185, 212, 333
Lsp1109I GCAGC 2 cut(s) 347, 369
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 96, 279
MaeIII GTNAC 3 cut(s) 175, 365, 383
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 2 cut(s) 286, 340
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 1 cut(s) 414
MnlI CCTC 5 cut(s) 16, 28, 104, 107, 199
Mph1103I ATGCAT 4 cut(s) 129, 476, 480, 484
MspA1I CMGCKG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 71, 200
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 2 cut(s) 71, 200
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 35, 60, 210
NdeII GATC 1 cut(s) 330
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 6 cut(s) 42, 131, 423, 478, 482, 486
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 365, 383
NsiI ATGCAT 4 cut(s) 129, 476, 480, 484
NspI RCATGY 4 cut(s) 42, 423, 478, 482
PaeI GCATGC 3 cut(s) 42, 478, 482
PasI CCCWGGG 1 cut(s) 70
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 3 cut(s) 212, 359, 362
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 69, 198
PspGI CCWGG 2 cut(s) 69, 198
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 73, 212
PstI CTGCAG 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 360
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SacI GAGCTC 1 cut(s) 65
SatI GCNGC 3 cut(s) 211, 358, 361
Sau3AI GATC 1 cut(s) 330
Sau96I GGNCC 2 cut(s) 73, 212
ScrFI CCNGG 2 cut(s) 71, 200
SduI GDGCHC 1 cut(s) 65
SetI ASST 9 cut(s) 65, 84, 101, 118, 182, 191, 232, 362, 414
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 163, 361
SphI GCATGC 3 cut(s) 42, 478, 482
Sse9I AATT 1 cut(s) 414
SsiI CCGC 3 cut(s) 210, 223, 400
SspMI CTAG 2 cut(s) 96, 279
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 69, 198
TaaI ACNGT 3 cut(s) 175, 371, 383
TasI AATT 1 cut(s) 414
TatI WGTACW 1 cut(s) 233
TauI GCSGC 1 cut(s) 213
TscAI CASTG 4 cut(s) 252, 370, 376, 388
TseFI GTSAC 2 cut(s) 365, 383
TseI GCWGC 2 cut(s) 357, 360
Tsp45I GTSAC 2 cut(s) 365, 383
TspDTI ATGAA 1 cut(s) 417
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 4 cut(s) 252, 370, 376, 388
Van91I CCANNNNNTGG 1 cut(s) 205
XceI RCATGY 4 cut(s) 42, 423, 478, 482
XspI CTAG 2 cut(s) 96, 279
Zsp2I ATGCAT 4 cut(s) 129, 476, 480, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.