Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016673

Physical Location & Seq

Genomic Coordinates Reverse (-)

2729506 .. 2730360

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATACATCAATATATGTTGAGACGATAGGATCATGGGACACTGTTCAACAAAAGCTCTTTGTGGCCACAACTTCTTTCCGTCTCTCAGAGCCTGCAATTGTCAACCAAACAATGGCTTCCAACATCAGCCTCCCTAGCTTTCAAAACCCTCTTCTCAAATCCAATTTCCTGGGAAGAAATGACCACTCTAATCTAGCCCCCAAGCCTTGTTTCACAGTTCAAAGAAGGCCATCCCCCCACCACCTAAGAACATATGCCAAGTTTAATCTGTTCGAAATCTTGGGAGGCAGAGGGCTCCTAAATGGAGAGCGAGGCGTCGAGAAAGAGCTTACAAGAAATGTCGAAGAACAAGCACCAGCAGCTGTTGGTGATGAGACAGAGAAAGCAGAGGGGGAAGAACAATCAGAAGGCTCGGCAATTGCTGCAATTGACAGTGCTCAAGAAGCTGCTTTTGAAAAGGAGTTGATGGGGCTTACCGGGGGATTTCCTGGTGGTGAAACTGGGTTGAGAAAGTTCATCGAGAAAAACCCGCCTCCCAAGAAACCACCAGCTGCGGAATCTGGAGCAACAGCAGTGCTAGTGAGCTCAAAGAAGCCGAAAGCACCTGAATTGCCAATATTACTACCTGGTATGATCGCCATTGTTAGCAATCCAAATAATCCCTATCACATGTACTGTGGCATTGTTCAGAGAATCACTGATGGAAAAGCTGGGGTTCTTTTTGAGGGAGGAAACTGGGATCGGTTAATCACTTTCCGACTAGAAGAACTAACTCGCAGAGAGAAGGGACCTCCAGGGAAGAATCCCAGATCCGCGATTCTTGAACCTCTGCTTCAAAAGGATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhS

Protein Analysis

285

Amino Acids

30.97

Weight (kDa)

6.18

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhS	PF11623	208 - 259	1.5e-27	NAD(P)H dehydrogenase subunit S

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23890
fragaria_vesca	FvH4_5g04650
prunus_persica	Prupe.5G120500_v2.0.a1
pyrus_communis	pycom06g10140
rosa_laevigata	RLG00000004174
rosa_multiflora	Rmu_sc0004154.1_g000007 Rmu_sc0008861.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261100
rosa_rugosa	Rorug07G0017800
rosa_samantha	Rh7AG145500 Rh7BG145300 Rh7CG149500 Rh7DG146800
rosa_wichuraiana	Rw7G012420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccII	CGCG	1 cut(s)	818
AciI	CCGC	3 cut(s)	533, 557, 816
AclWI	GGATC	3 cut(s)	40, 750, 807
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	6 cut(s)	50, 146, 224, 458, 827, 839
AjnI	CCWGG	4 cut(s)	171, 490, 628, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	8 cut(s)	58, 141, 331, 365, 449, 554, 588, 713
AluI	AGCT	8 cut(s)	58, 141, 331, 365, 449, 554, 588, 713
Alw21I	GWGCWC	2 cut(s)	442, 590
Alw26I	GTCTC	3 cut(s)	17, 89, 371
AlwI	GGATC	3 cut(s)	40, 750, 807
AlwNI	CAGNNNCTG	2 cut(s)	95, 365
AoxI	GGCC	2 cut(s)	66, 230
ApeKI	GCWGC	4 cut(s)	362, 425, 449, 554
AspS9I	GGNCC	1 cut(s)	791
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	383, 509
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	791
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	300, 590
Bbv12I	GWGCWC	2 cut(s)	442, 590
BbvI	GCAGC	4 cut(s)	374, 412, 436, 541
BccI	CCATC	3 cut(s)	241, 463, 698
BciT130I	CCWGG	4 cut(s)	173, 492, 630, 798
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	17, 89, 371
BfaI	CTAG	4 cut(s)	138, 197, 581, 764
BisI	GCNGC	4 cut(s)	363, 426, 450, 555
BlsI	GCNGC	4 cut(s)	364, 427, 451, 556
Bme1390I	CCNGG	5 cut(s)	173, 481, 492, 630, 798
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	791
BmiI	GGNNCC	2 cut(s)	299, 792
BmrFI	CCNGG	5 cut(s)	173, 481, 492, 630, 798
BmrI	ACTGGG	2 cut(s)	513, 748
BmuI	ACTGGG	2 cut(s)	513, 748
BpmI	CTGGAG	2 cut(s)	585, 780
Bpu14I	TTCGAA	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	481
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	172, 480, 797
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	508, 743
BseBI	CCWGG	4 cut(s)	173, 492, 630, 798
BseDI	CCNNGG	3 cut(s)	172, 480, 797
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	508, 743
BseXI	GCAGC	4 cut(s)	374, 412, 436, 541
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	2 cut(s)	68, 232
BsiHKAI	GWGCWC	2 cut(s)	442, 590
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	2 cut(s)	53, 804
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	3 cut(s)	17, 89, 371
BsmBI	CGTCTC	2 cut(s)	17, 89
BsmFI	GGGAC	2 cut(s)	53, 804
BsnI	GGCC	2 cut(s)	68, 232
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	300, 442, 590
Bsp143I	GATC	4 cut(s)	32, 636, 742, 812
BspACI	CCGC	3 cut(s)	533, 557, 816
BspANI	GGCC	2 cut(s)	68, 232
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	818
BspLI	GGNNCC	2 cut(s)	299, 792
BspPI	GGATC	3 cut(s)	40, 750, 807
BspT104I	TTCGAA	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	508, 743
BssECI	CCNNGG	3 cut(s)	172, 480, 797
BssMI	GATC	4 cut(s)	32, 636, 742, 812
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	4 cut(s)	173, 492, 630, 798
Bst4CI	ACNGT	4 cut(s)	46, 220, 437, 680
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	88, 248
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	818
BstKTI	GATC	4 cut(s)	35, 639, 745, 815
BstMAI	GTCTC	3 cut(s)	17, 89, 371
BstMBI	GATC	4 cut(s)	32, 636, 742, 812
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 362, 425, 446
BstNI	CCWGG	4 cut(s)	173, 492, 630, 798
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	5 cut(s)	171, 479, 490, 628, 796
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	4 cut(s)	374, 412, 436, 541
BstX2I	RGATCY	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	812
BsuRI	GGCC	2 cut(s)	68, 232
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	4 cut(s)	42, 442, 582, 699
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	2 cut(s)	95, 365
Cfr13I	GGNCC	1 cut(s)	791
CseI	GACGC	1 cut(s)	307
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	2 cut(s)	36, 673
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	2 cut(s)	88, 248
DpnI	GATC	4 cut(s)	34, 638, 744, 814
DpnII	GATC	4 cut(s)	32, 636, 742, 812
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	588
Eco24I	GRGCYC	2 cut(s)	300, 590
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	4 cut(s)	171, 490, 628, 796
EcoT38I	GRGCYC	2 cut(s)	300, 590
Esp3I	CGTCTC	2 cut(s)	17, 89
FaeI	CATG	2 cut(s)	39, 676
FaiI	YATR	7 cut(s)	16, 18, 37, 256, 258, 635, 674
FaqI	GGGAC	2 cut(s)	53, 804
FatI	CATG	2 cut(s)	35, 672
FauI	CCCGC	1 cut(s)	540
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	363, 426, 450, 555
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	300, 590
Fsp4HI	GCNGC	4 cut(s)	363, 426, 450, 555
FspBI	CTAG	4 cut(s)	138, 197, 581, 764
GluI	GCNGC	4 cut(s)	363, 426, 450, 555
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	2 cut(s)	585, 780
HaeIII	GGCC	2 cut(s)	68, 232
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	39, 676
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	560, 696, 805, 820, 845
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	2 cut(s)	383, 509
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	91, 409, 693, 761, 850
Hpy188III	TCNNGA	5 cut(s)	322, 443, 523, 564, 824
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	222, 404, 781
HpyCH4III	ACNGT	4 cut(s)	46, 220, 437, 680
HpyCH4V	TGCA	2 cut(s)	98, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 362, 425, 446
HpyF3I	CTNAG	2 cut(s)	88, 248
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	39, 676
Kzo9I	GATC	4 cut(s)	32, 636, 742, 812
LmnI	GCTCC	2 cut(s)	303, 566
Lsp1109I	GCAGC	4 cut(s)	374, 412, 436, 541
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	4 cut(s)	138, 197, 581, 764
MalI	GATC	4 cut(s)	34, 638, 744, 814
MboI	GATC	4 cut(s)	32, 636, 742, 812
MboII	GAAGA	6 cut(s)	146, 189, 359, 410, 779, 814
MfeI	CAATTG	3 cut(s)	99, 420, 429
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	3 cut(s)	300, 442, 590
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	5 cut(s)	99, 166, 420, 429, 611
MluNI	TGGCCA	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	147, 784
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	2 cut(s)	267, 749
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	365, 554
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	5 cut(s)	173, 481, 492, 630, 798
MunI	CAATTG	3 cut(s)	99, 420, 429
MvaI	CCWGG	4 cut(s)	173, 492, 630, 798
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	4 cut(s)	138, 362, 425, 446
NciI	CCSGG	1 cut(s)	481
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	4 cut(s)	32, 636, 742, 812
NlaIII	CATG	2 cut(s)	39, 676
NlaIV	GGNNCC	2 cut(s)	299, 792
NmeAIII	GCCGAG	1 cut(s)	395
NspI	RCATGY	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	276
PciI	ACATGT	1 cut(s)	672
PfeI	GAWTC	5 cut(s)	560, 696, 805, 820, 845
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	364, 427, 451, 556
PpuMI	RGGWCCY	1 cut(s)	791
PscI	ACATGT	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	4 cut(s)	171, 490, 628, 796
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	4 cut(s)	171, 490, 628, 796
PspN4I	GGNNCC	2 cut(s)	299, 792
PspPI	GGNCC	1 cut(s)	791
PspPPI	RGGWCCY	1 cut(s)	791
PstNI	CAGNNNCTG	2 cut(s)	95, 365
PsuI	RGATCY	1 cut(s)	812
PvuII	CAGCTG	2 cut(s)	365, 554
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
SacI	GAGCTC	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	267, 749
SatI	GCNGC	4 cut(s)	363, 426, 450, 555
Sau3AI	GATC	4 cut(s)	32, 636, 742, 812
Sau96I	GGNCC	1 cut(s)	791
ScrFI	CCNGG	5 cut(s)	173, 481, 492, 630, 798
SduI	GDGCHC	3 cut(s)	300, 442, 590
SexAI	ACCWGGT	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
Sse9I	AATT	5 cut(s)	99, 166, 420, 429, 611
SsiI	CCGC	3 cut(s)	533, 557, 816
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	4 cut(s)	138, 197, 581, 764
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	5 cut(s)	171, 479, 490, 628, 796
TaaI	ACNGT	4 cut(s)	46, 220, 437, 680
TaqI	TCGA	4 cut(s)	276, 321, 345, 522
TasI	AATT	5 cut(s)	99, 166, 420, 429, 611
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	5 cut(s)	560, 696, 805, 820, 845
Tru1I	TTAA	2 cut(s)	267, 749
Tru9I	TTAA	2 cut(s)	267, 749
TscAI	CASTG	4 cut(s)	49, 442, 582, 706
TseI	GCWGC	4 cut(s)	362, 425, 449, 554
TspDTI	ATGAA	1 cut(s)	508
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	49, 442, 582, 706
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	791
XceI	RCATGY	1 cut(s)	676
XspI	CTAG	4 cut(s)	138, 197, 581, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.