pycom06g10140

NAD(P)H dehydrogenase subunit S

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016673
Physical Location & Seq
Reverse (-)
15526347 .. 15527093
747 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10140.1

Sequence Viewer

Length: 747 bp
ATGGCTTCTAGCATCAATCTTCCAAGTTTTCAAGGCCCTCTTCTCAAATCCAATTTTCTTGGAAGAAATGATCTCTCGAATCAAGCTCGTAAATCGTCTTTCGCAGTTCACAAGCAGCCATCGACGCACTCCCTGAGACCCTCTGCCAAATTTAACCTATCCGAAATCTTGGGAGGCAGGGGGCTCTGCAATGGTGAAGCAGGTCTACTGCAAGAGCTTACGAGAAATGTCGAAGAACAGAAAAATGTCGAAGAAGAACAAGTATCAGCAGCAGCTGCCGCCAAAACAGAGGAAGAAAAACCAGATGGTTCTGCAACAGCTGCGATCGAAAGTGTTGAAGAAGATGGTTTTGATAAGGAGCTGATGGGACTTACCGGTGGATTTCCTGGTGGGGAAAAGGGGTTGCGAAAGTTCATTGAGAAAAACCCACCCCCCAAGAAGTCGTCGATTGCAATTTCCGGATCAACAGCAGCACTCGTGAGCACAAAGAAGCCGAAAGCACCTGAACTGCCATTGTTACTACCTGGTATGATTGCCATTGTCAACAACCCAAATAGTCCTTACTACATGTACTGTGGCATTGTTCAGCGAATCACCGATGGGAAAGCTGGGGTTCTTTTTGAGGGCGGGAATTGGGACAGGCTGATTACTTTCCGACTGGGAGAGCTCATGCGCAGAGACAAGGGCCCTCCGGGGAAAAATCCCAAATCCTGCGTCCTCGAACCTTTTCTCCAAAAGGATTCCTGA

Protein Analysis

249

Amino Acids

26.7

Weight (kDa)

8.67

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhS PF11623 173 - 223 1.9e-27 NAD(P)H dehydrogenase subunit S
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016673)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23890
fragaria_vesca FvH4_5g04650
prunus_persica Prupe.5G120500_v2.0.a1
pyrus_communis pycom06g10140
rosa_laevigata RLG00000004174
rosa_multiflora Rmu_sc0004154.1_g000007 Rmu_sc0008861.1_g000005
rosa_roxburghii Rroxscaffold_3G00261100
rosa_rugosa Rorug07G0017800
rosa_samantha Rh7AG145500 Rh7BG145300 Rh7CG149500 Rh7DG146800
rosa_wichuraiana Rw7G012420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 674
Acc36I ACCTGC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 205
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 2 cut(s) 279, 627
AclWI GGATC 1 cut(s) 469
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 567
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 2 cut(s) 32, 338
AjnI CCWGG 2 cut(s) 385, 523
AloI GAACNNNNNNTCC 2 cut(s) 714, 746
AluBI AGCT 7 cut(s) 86, 217, 275, 320, 361, 608, 667
AluI AGCT 7 cut(s) 86, 217, 275, 320, 361, 608, 667
Alw21I GWGCWC 2 cut(s) 485, 669
Alw26I GTCTC 2 cut(s) 130, 672
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 2 cut(s) 34, 685
ApaI GGGCCC 1 cut(s) 689
ApeKI GCWGC 6 cut(s) 115, 269, 272, 275, 320, 470
ApoI RAATTY 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 35, 685, 686
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 206, 586
BaeGI GKGCMC 1 cut(s) 689
BanII GRGCYC 3 cut(s) 186, 669, 689
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
BauI CACGAG 1 cut(s) 476
Bbv12I GWGCWC 2 cut(s) 485, 669
BbvI GCAGC 6 cut(s) 127, 262, 281, 284, 307, 482
BccI CCATC 5 cut(s) 127, 299, 338, 358, 593
BciT130I CCWGG 2 cut(s) 387, 525
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 130, 672
BfaI CTAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 7 cut(s) 116, 270, 273, 276, 279, 321, 471
BlsI GCNGC 7 cut(s) 117, 271, 274, 277, 280, 322, 472
Bme1390I CCNGG 3 cut(s) 387, 525, 693
BmgT120I GGNCC 3 cut(s) 35, 685, 686
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 3 cut(s) 387, 525, 693
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 692
BsaWI WCCGGW 2 cut(s) 374, 458
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 458
BseBI CCWGG 2 cut(s) 387, 525
BseDI CCNNGG 1 cut(s) 692
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 663
BseSI GKGCMC 1 cut(s) 689
BseXI GCAGC 6 cut(s) 127, 262, 281, 284, 307, 482
BseYI CCCAGC 1 cut(s) 608
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 36, 687
BshTI ACCGGT 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 485, 669
BsiSI CCGG 3 cut(s) 375, 459, 692
BslFI GGGAC 2 cut(s) 381, 650
BsmAI GTCTC 2 cut(s) 130, 672
BsmFI GGGAC 2 cut(s) 381, 650
BsnI GGCC 2 cut(s) 36, 687
Bso31I GGTCTC 1 cut(s) 130
Bsp120I GGGCCC 1 cut(s) 685
Bsp1286I GDGCHC 4 cut(s) 186, 485, 669, 689
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 3 cut(s) 70, 324, 461
BspACI CCGC 2 cut(s) 279, 627
BspANI GGCC 2 cut(s) 36, 687
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 687
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 469
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 3 cut(s) 70, 324, 461
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 387, 525
Bst4CI ACNGT 1 cut(s) 575
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 2 cut(s) 275, 320
BstDEI CTNAG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 3 cut(s) 73, 327, 464
BstMAI GTCTC 2 cut(s) 130, 672
BstMBI GATC 3 cut(s) 70, 324, 461
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 4 cut(s) 124, 275, 278, 320
BstNI CCWGG 2 cut(s) 387, 525
BstNSI RCATGY 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 385, 523, 691
BstSLI GKGCMC 1 cut(s) 689
BstV1I GCAGC 6 cut(s) 127, 262, 281, 284, 307, 482
BsuRI GGCC 2 cut(s) 36, 687
BveI ACCTGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 1 cut(s) 675
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 3 cut(s) 35, 685, 686
CseI GACGC 2 cut(s) 133, 703
CsiI ACCWGGT 1 cut(s) 523
Csp6I GTAC 1 cut(s) 571
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 2 cut(s) 568, 670
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 72, 326, 463
DpnII GATC 3 cut(s) 70, 324, 461
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 667
Eco24I GRGCYC 3 cut(s) 186, 669, 689
Eco31I GGTCTC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 667
EcoO109I RGGNCCY 3 cut(s) 35, 685, 686
EcoRII CCWGG 2 cut(s) 385, 523
EcoT38I GRGCYC 3 cut(s) 186, 669, 689
FaeI CATG 2 cut(s) 571, 673
FaiI YATR 3 cut(s) 530, 569, 671
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 2 cut(s) 381, 650
FatI CATG 2 cut(s) 567, 669
FauI CCCGC 1 cut(s) 620
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 7 cut(s) 116, 270, 273, 276, 279, 321, 471
FriOI GRGCYC 3 cut(s) 186, 669, 689
Fsp4HI GCNGC 7 cut(s) 116, 270, 273, 276, 279, 321, 471
FspBI CTAG 1 cut(s) 9
FspI TGCGCA 1 cut(s) 674
GlaI GCGC 1 cut(s) 674
GluI GCNGC 7 cut(s) 116, 270, 273, 276, 279, 321, 471
GsaI CCCAGC 1 cut(s) 612
HaeIII GGCC 2 cut(s) 36, 687
HapII CCGG 3 cut(s) 375, 459, 692
HgaI GACGC 2 cut(s) 133, 703
HhaI GCGC 1 cut(s) 675
Hin1II CATG 2 cut(s) 571, 673
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 3 cut(s) 79, 591, 740
HpaII CCGG 3 cut(s) 375, 459, 692
HphI GGTGA 2 cut(s) 206, 586
Hpy166II GTNNAC 3 cut(s) 109, 206, 544
Hpy188I TCNGA 2 cut(s) 163, 656
Hpy188III TCNNGA 4 cut(s) 76, 459, 478, 744
Hpy8I GTNNAC 3 cut(s) 109, 206, 544
Hpy99I CGWCG 2 cut(s) 127, 448
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4V TGCA 4 cut(s) 189, 211, 314, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 275, 278, 320
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 2 cut(s) 571, 673
HspAI GCGC 1 cut(s) 673
Kpn2I TCCGGA 1 cut(s) 458
Kzo9I GATC 3 cut(s) 70, 324, 461
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 6 cut(s) 127, 262, 281, 284, 307, 482
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 523
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 516
MalI GATC 3 cut(s) 72, 326, 463
MboI GATC 3 cut(s) 70, 324, 461
MboII GAAGA 9 cut(s) 11, 32, 75, 245, 263, 266, 305, 350, 353
MhlI GDGCHC 4 cut(s) 186, 485, 669, 689
MluCI AATT 4 cut(s) 52, 149, 453, 631
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 7 cut(s) 48, 151, 167, 283, 616, 699, 728
MroI TCCGGA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 2 cut(s) 275, 320
MspI CCGG 3 cut(s) 375, 459, 692
MspR9I CCNGG 3 cut(s) 387, 525, 693
MvaI CCWGG 2 cut(s) 387, 525
MwoI GCNNNNNNNGC 4 cut(s) 124, 275, 278, 320
NciI CCSGG 1 cut(s) 693
NdeII GATC 3 cut(s) 70, 324, 461
NlaIII CATG 2 cut(s) 571, 673
NlaIV GGNNCC 1 cut(s) 687
NsbI TGCGCA 1 cut(s) 674
NspI RCATGY 1 cut(s) 571
PciI ACATGT 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 79, 591, 740
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 7 cut(s) 117, 271, 274, 277, 280, 322, 472
Ple19I CGATCG 1 cut(s) 327
PscI ACATGT 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 669
Psp6I CCWGG 2 cut(s) 385, 523
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 385, 523
PspN4I GGNNCC 1 cut(s) 687
PspOMI GGGCCC 1 cut(s) 685
PspPI GGNCC 3 cut(s) 35, 685, 686
PstNI CAGNNNCTG 1 cut(s) 275
PvuI CGATCG 1 cut(s) 327
PvuII CAGCTG 2 cut(s) 275, 320
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 7 cut(s) 116, 270, 273, 276, 279, 321, 471
Sau3AI GATC 3 cut(s) 70, 324, 461
Sau96I GGNCC 3 cut(s) 35, 685, 686
ScrFI CCNGG 3 cut(s) 387, 525, 693
SduI GDGCHC 4 cut(s) 186, 485, 669, 689
SexAI ACCWGGT 1 cut(s) 523
SfaNI GCATC 1 cut(s) 21
Sse9I AATT 4 cut(s) 52, 149, 453, 631
SsiI CCGC 2 cut(s) 279, 627
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 669
StyD4I CCNGG 3 cut(s) 385, 523, 691
TaaI ACNGT 1 cut(s) 575
TaqI TCGA 7 cut(s) 77, 122, 231, 249, 327, 446, 720
TasI AATT 4 cut(s) 52, 149, 453, 631
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 79, 591, 740
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 6 cut(s) 115, 269, 272, 275, 320, 470
TspDTI ATGAA 1 cut(s) 403
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.